Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02056 ATGTCTGACGTGGCGAGTATAGCAGAGGCAGTGGCAGCAAGATTTAGTTCTTTGGAGCTTATTGGAAGAGGATCTTTTGGTGATGTCTACAAGGGGTTTGACAAGGAGCTTAACAAAGAAGTTGCTATCAAAGTTATTGATTTGGAAGAATCTGAGGATGAAATTGAGGATATTCAAAAGGAAATTTCTGTTTTGTCACAATGTCGATCACCCTACATTACTGAGTACTATGGTTCTTATCTCCACCAGACTAAATTATGGATAATAATGGAATATATGGCTGGTGGCTCTGTTGCAGATCTGCTTCAGTCTGGGCCACCGCTTGATGAAATGTCAATTGCATGCATTCTACGGGATTTGCTGCATGCTATTGATTATTTGCACAGCGAAGGAAAAATTCACAGGGACATTAAAGCGGCAAACATTTTACTGAGTGAAAATGGTGATGTTAAGGTTGCAGATTTTGGTGTTTCTGCTCAATTAACAAGGACAATATCAAGGAGAAAGACATTTGTAGGAACTCCATTCTGGATGGCGCCAGAGGTAATTCAGAACTCTGAAGGATACAATGAGAAGGCAGACATCTGGTCTCTAGGAATCACTGCTATTGAAATGGCAAAAGGGGAGCCTCCACTTGCTGATCTTCATCCCATGAGAGTTCTTTTTATCATACCGCGAGAAAATCCACCTCAGTTGGATGAACATTTTTCTCGCCCTATGAAAGAATTAGTGTCACTCTGTCTGAAGAAAATACCTGCTGAGAGACCCAGTGCGAAAGAGCTTCTGAAGCACCGATTCATTAAGAATGCCAGGAAGAGTCCTAGGCTTCTGGAGAGAATAAGAGAACGTCCGAAGTACCAAATAAAGGAAGAAGATGCAGAAACACCAACAAACGATCCTAGAGCTATAGGTGAAACGTCAGACACTGTGAAAGTATCAAGAAATGTAAGAGATGAAACTGTTCGTGCCAGCAACCAGAGTAAAGCTCCAAAGAATGCTGGATGGGACTTTAGTATTGGGGGACCGCATAGTACAGGTACTGTTCGAAGTGTAGTAAAACCACCTCAAATTAGGGAAAGAAAACCAGAAATTCCTTATGGTCAGGCTGCACCTAGTAGAGTTGCAGAGAGTGGTAACTGGCTAGCTGCGTCTGGATATGCACCACGCGACATGTCAGAAAACACTAGAGATTCGTACAATATGGGAGATGCTAGTGAAGATGAAGAGTTATCTATAAGTGGTTCAGGAACCGTTGTGATCCGGTCTCCCAGGGGATCTCAAGCATCTACTCAATTTCATAATGAAAGCAGTCCGTCTGGAAGTGCACAAGCATATTTTGAGGACACATCTTTTAGTGGTACTGTTGTTATGCGTGGTCAACGTGATGATTTTGATTCTCCTCAGACTCCAAAATCCAGATTGGGAATTCAAGAAAGGACTTCAAGTTTGTCTCCTGAAGACAGTGCATCAAACCTTGCGGAGGCAAAGGCTGCAATTCAGGCAGGATTGAAGAAAGCTAATGCAAGGGATAGATCAGCTATCAATAGACTCAACGACAGGAAGGAAAATAGAAGAACAGAGCAAACAGTGAGTAGCTCTGACTCTTCAAGGAATTCTCGTGAATTCTTTGATGCGCCAAGAGCATTGCCAAAACCATCTCTGTCAATTGACGAGGAAGAAAGTGCAAAAATAGCATCGTCTTCTGCACCATTATCGGTTTTGTTTATGTCATCCTTGAAAGAGGTAACTGCATGGTACTTTTGTGAAGTGTTTCCATCTAGTTCTGCTATCTTGGTCTCTGTTTTATCCAGTTATATTAGGATGTGGGAGTTAGACGTCAAACGACCCTTGCTTAGGGGGACTGAAGAAAAGCCGTTACCACTTGCTACTCTTGGCACAATTGCTAACACTTACCTTATATTTCCATCTTTCCTGTTGTTTGACCAATCCTTTGTCTACTACGTCTTTGCTAGAGCTTCTATACTCTAA 1989 42.13 MSDVASIAEAVAARFSSLELIGRGSFGDVYKGFDKELNKEVAIKVIDLEESEDEIEDIQKEISVLSQCRSPYITEYYGSYLHQTKLWIIMEYMAGGSVADLLQSGPPLDEMSIACILRDLLHAIDYLHSEGKIHRDIKAANILLSENGDVKVADFGVSAQLTRTISRRKTFVGTPFWMAPEVIQNSEGYNEKADIWSLGITAIEMAKGEPPLADLHPMRVLFIIPRENPPQLDEHFSRPMKELVSLCLKKIPAERPSAKELLKHRFIKNARKSPRLLERIRERPKYQIKEEDAETPTNDPRAIGETSDTVKVSRNVRDETVRASNQSKAPKNAGWDFSIGGPHSTGTVRSVVKPPQIRERKPEIPYGQAAPSRVAESGNWLAASGYAPRDMSENTRDSYNMGDASEDEELSISGSGTVVIRSPRGSQASTQFHNESSPSGSAQAYFEDTSFSGTVVMRGQRDDFDSPQTPKSRLGIQERTSSLSPEDSASNLAEAKAAIQAGLKKANARDRSAINRLNDRKENRRTEQTVSSSDSSRNSREFFDAPRALPKPSLSIDEEESAKIASSSAPLSVLFMSSLKEVTAWYFCEVFPSSSAILVSVLSSYIRMWELDVKRPLLRGTEEKPLPLATLGTIANTYLIFPSFLLFDQSFVYYVFARASIL 662
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27651323 27666879 - Lsi04G020560.1 Lsi04g02056 662105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02056 662 MobiDBLite consensus disorder prediction 386 444 - -
Lsi04g02056 662 Gene3D Transferase(Phosphotransferase) domain 1 12 304 - -
Lsi04g02056 662 MobiDBLite consensus disorder prediction 410 444 - -
Lsi04g02056 662 MobiDBLite consensus disorder prediction 509 528 - -
Lsi04g02056 662 MobiDBLite consensus disorder prediction 509 543 - -
Lsi04g02056 662 PANTHER STERILE20-LIKE KINASE, ISOFORM B-RELATED 1 582 - -
Lsi04g02056 662 SMART serkin_6 15 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g02056 662 SUPERFAMILY Protein kinase-like (PK-like) 13 309 IPR011009 -
Lsi04g02056 662 CDD STKc_MST3_like 14 287 - -
Lsi04g02056 662 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Lsi04g02056 662 MobiDBLite consensus disorder prediction 459 490 - -
Lsi04g02056 662 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 582 - -
Lsi04g02056 662 Pfam Protein kinase domain 16 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g02056 662 MobiDBLite consensus disorder prediction 470 489 - -
Lsi04g02056 662 MobiDBLite consensus disorder prediction 287 374 - -
Lsi04g02056 662 Coils Coil 41 68 - -
Lsi04g02056 662 ProSiteProfiles Protein kinase domain profile. 15 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01186 Lsi-Chr4:17627287 Lsi04g02056 Lsi-Chr4:27651323 8.86E-72 dispersed
Lsi04g02056 Lsi-Chr4:27651323 Lsi07g01113 Lsi-Chr7:16576131 4.28E-70 dispersed
Lsi06g00302 Lsi-Chr6:3461235 Lsi04g02056 Lsi-Chr4:27651323 1.77E-41 dispersed
Lsi04g02056 Lsi-Chr4:27651323 Lsi05g01693 Lsi-Chr5:24479118 9.16E-63 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83606 PF00069 Pkinase 2.00E-68 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02056 K08838 - csv:101214412 1077.77