Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02056 ATGTCTGACGTGGCGAGTATAGCAGAGGCAGTGGCAGCAAGATTTAGTTCTTTGGAGCTTATTGGAAGAGGATCTTTTGGTGATGTCTACAAGGGGTTTGACAAGGAGCTTAACAAAGAAGTTGCTATCAAAGTTATTGATTTGGAAGAATCTGAGGATGAAATTGAGGATATTCAAAAGGAAATTTCTGTTTTGTCACAATGTCGATCACCCTACATTACTGAGTACTATGGTTCTTATCTCCACCAGACTAAATTATGGATAATAATGGAATATATGGCTGGTGGCTCTGTTGCAGATCTGCTTCAGTCTGGGCCACCGCTTGATGAAATGTCAATTGCATGCATTCTACGGGATTTGCTGCATGCTATTGATTATTTGCACAGCGAAGGAAAAATTCACAGGGACATTAAAGCGGCAAACATTTTACTGAGTGAAAATGGTGATGTTAAGGTTGCAGATTTTGGTGTTTCTGCTCAATTAACAAGGACAATATCAAGGAGAAAGACATTTGTAGGAACTCCATTCTGGATGGCGCCAGAGGTAATTCAGAACTCTGAAGGATACAATGAGAAGGCAGACATCTGGTCTCTAGGAATCACTGCTATTGAAATGGCAAAAGGGGAGCCTCCACTTGCTGATCTTCATCCCATGAGAGTTCTTTTTATCATACCGCGAGAAAATCCACCTCAGTTGGATGAACATTTTTCTCGCCCTATGAAAGAATTAGTGTCACTCTGTCTGAAGAAAATACCTGCTGAGAGACCCAGTGCGAAAGAGCTTCTGAAGCACCGATTCATTAAGAATGCCAGGAAGAGTCCTAGGCTTCTGGAGAGAATAAGAGAACGTCCGAAGTACCAAATAAAGGAAGAAGATGCAGAAACACCAACAAACGATCCTAGAGCTATAGGTGAAACGTCAGACACTGTGAAAGTATCAAGAAATGTAAGAGATGAAACTGTTCGTGCCAGCAACCAGAGTAAAGCTCCAAAGAATGCTGGATGGGACTTTAGTATTGGGGGACCGCATAGTACAGGTACTGTTCGAAGTGTAGTAAAACCACCTCAAATTAGGGAAAGAAAACCAGAAATTCCTTATGGTCAGGCTGCACCTAGTAGAGTTGCAGAGAGTGGTAACTGGCTAGCTGCGTCTGGATATGCACCACGCGACATGTCAGAAAACACTAGAGATTCGTACAATATGGGAGATGCTAGTGAAGATGAAGAGTTATCTATAAGTGGTTCAGGAACCGTTGTGATCCGGTCTCCCAGGGGATCTCAAGCATCTACTCAATTTCATAATGAAAGCAGTCCGTCTGGAAGTGCACAAGCATATTTTGAGGACACATCTTTTAGTGGTACTGTTGTTATGCGTGGTCAACGTGATGATTTTGATTCTCCTCAGACTCCAAAATCCAGATTGGGAATTCAAGAAAGGACTTCAAGTTTGTCTCCTGAAGACAGTGCATCAAACCTTGCGGAGGCAAAGGCTGCAATTCAGGCAGGATTGAAGAAAGCTAATGCAAGGGATAGATCAGCTATCAATAGACTCAACGACAGGAAGGAAAATAGAAGAACAGAGCAAACAGTGAGTAGCTCTGACTCTTCAAGGAATTCTCGTGAATTCTTTGATGCGCCAAGAGCATTGCCAAAACCATCTCTGTCAATTGACGAGGAAGAAAGTGCAAAAATAGCATCGTCTTCTGCACCATTATCGGTTTTGTTTATGTCATCCTTGAAAGAGGTAACTGCATGGTACTTTTGTGAAGTGTTTCCATCTAGTTCTGCTATCTTGGTCTCTGTTTTATCCAGTTATATTAGGATGTGGGAGTTAGACGTCAAACGACCCTTGCTTAGGGGGACTGAAGAAAAGCCGTTACCACTTGCTACTCTTGGCACAATTGCTAACACTTACCTTATATTTCCATCTTTCCTGTTGTTTGACCAATCCTTTGTCTACTACGTCTTTGCTAGAGCTTCTATACTCTAA 1989 42.13 MSDVASIAEAVAARFSSLELIGRGSFGDVYKGFDKELNKEVAIKVIDLEESEDEIEDIQKEISVLSQCRSPYITEYYGSYLHQTKLWIIMEYMAGGSVADLLQSGPPLDEMSIACILRDLLHAIDYLHSEGKIHRDIKAANILLSENGDVKVADFGVSAQLTRTISRRKTFVGTPFWMAPEVIQNSEGYNEKADIWSLGITAIEMAKGEPPLADLHPMRVLFIIPRENPPQLDEHFSRPMKELVSLCLKKIPAERPSAKELLKHRFIKNARKSPRLLERIRERPKYQIKEEDAETPTNDPRAIGETSDTVKVSRNVRDETVRASNQSKAPKNAGWDFSIGGPHSTGTVRSVVKPPQIRERKPEIPYGQAAPSRVAESGNWLAASGYAPRDMSENTRDSYNMGDASEDEELSISGSGTVVIRSPRGSQASTQFHNESSPSGSAQAYFEDTSFSGTVVMRGQRDDFDSPQTPKSRLGIQERTSSLSPEDSASNLAEAKAAIQAGLKKANARDRSAINRLNDRKENRRTEQTVSSSDSSRNSREFFDAPRALPKPSLSIDEEESAKIASSSAPLSVLFMSSLKEVTAWYFCEVFPSSSAILVSVLSSYIRMWELDVKRPLLRGTEEKPLPLATLGTIANTYLIFPSFLLFDQSFVYYVFARASIL 662
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27651323 27666879 - Lsi04G020560.1 Lsi04g02056 662105

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02056 662 MobiDBLite consensus disorder prediction 386 444 - -
Lsi04g02056 662 Gene3D Transferase(Phosphotransferase) domain 1 12 304 - -
Lsi04g02056 662 MobiDBLite consensus disorder prediction 410 444 - -
Lsi04g02056 662 MobiDBLite consensus disorder prediction 509 528 - -
Lsi04g02056 662 MobiDBLite consensus disorder prediction 509 543 - -
Lsi04g02056 662 PANTHER STERILE20-LIKE KINASE, ISOFORM B-RELATED 1 582 - -
Lsi04g02056 662 SMART serkin_6 15 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g02056 662 SUPERFAMILY Protein kinase-like (PK-like) 13 309 IPR011009 -
Lsi04g02056 662 CDD STKc_MST3_like 14 287 - -
Lsi04g02056 662 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Lsi04g02056 662 MobiDBLite consensus disorder prediction 459 490 - -
Lsi04g02056 662 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 582 - -
Lsi04g02056 662 Pfam Protein kinase domain 16 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g02056 662 MobiDBLite consensus disorder prediction 470 489 - -
Lsi04g02056 662 MobiDBLite consensus disorder prediction 287 374 - -
Lsi04g02056 662 Coils Coil 41 68 - -
Lsi04g02056 662 ProSiteProfiles Protein kinase domain profile. 15 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02056 K08838 STK24_25_MST4; serine/threonine-protein kinase 24/25/MST4 [EC:2.7.11.1] - csv:101214412 1077.77
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01186 Lsi-Chr4:17627287 Lsi04g02056 Lsi-Chr4:27651323 8.86E-72 dispersed
Lsi04g02056 Lsi-Chr4:27651323 Lsi07g01113 Lsi-Chr7:16576131 4.28E-70 dispersed
Lsi06g00302 Lsi-Chr6:3461235 Lsi04g02056 Lsi-Chr4:27651323 1.77E-41 dispersed
Lsi04g02056 Lsi-Chr4:27651323 Lsi05g01693 Lsi-Chr5:24479118 9.16E-63 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g189 . . . . . . . . . . Cma01g01216 Cma09g00851 Car01g01040 Car09g00765 . Cpe06g00678 Cpe02g00695 Bhi09g03449 . . . . Mch11g1051 . Cla11g01746 Cam11g1814 Cec11g1834 Cco11g1840 Clacu11g1974 Cmu11g1784 Cre11g2191 Cone6ag0161 Cone9ag0187 Cone14ag1056 . Lsi04g02056 Csa04g02327 Chy07g00059 Cme07g00580 . . . . . . . . . Cmo01g01271 Cmo09g00844 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi04g02056 . 1 581 MAP Kinase Kinase Kinase Kinase AT1G53165 66.8 7.9e-199 690.6
Lsi04g01186 . 269 523 MAP Kinase Kinase Kinase Kinase AT1G53165 51.2 1.7e-60 231.1
Lsi04g02056 . 1 581 MAP Kinase Kinase Kinase Kinase AT3G15220 68.6 8.2e-204 707.2
Lsi04g01186 . 4 523 MAP Kinase Kinase Kinase Kinase AT1G69220 57.7 7.0e-138 488.4
Lsi04g01185 . 38 357 MAP Kinase Kinase Kinase Kinase AT1G69220 53.3 4.6e-81 299.7
Lsi04g02056 . 23 268 MAP Kinase Kinase Kinase Kinase AT1G69220 52.2 1.3e-67 255.0
Lsi02g01568 . 1 666 MAP Kinase Kinase Kinase Kinase AT5G14720 64.6 1.4e-245 845.9
Lsi05g01693 CCT 25 380 MAP Kinase Kinase Kinase Kinase AT5G14720 50.4 9.5e-96 348.2
Lsi07g01113 . 7 702 MAP Kinase Kinase Kinase Kinase AT4G24100 63.8 1.0e-236 816.6
Lsi07g01113 . 11 695 MAP Kinase Kinase Kinase Kinase AT4G10730 66.9 6.4e-249 857.1
Lsi03g01252 . 4 367 MAP Kinase Kinase Kinase Kinase AT1G70430 62.0 2.1e-131 466.5
Lsi07g01113 . 5 369 MAP Kinase Kinase Kinase Kinase AT1G70430 56.5 2.3e-117 419.9
Lsi03g01252 . 1 584 MAP Kinase Kinase Kinase Kinase AT1G79640 58.2 1.6e-201 699.5
Lsi02g01568 . 6 585 MAP Kinase Kinase Kinase Kinase AT1G79640 50.3 5.5e-157 551.6
Lsi02g01568 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 58.9 5.7e-103 371.7
Lsi03g01252 . 6 324 MAP Kinase Kinase Kinase Kinase AT1G23700 51.9 5.8e-87 318.5
Lsi07g01113 . 15 306 MAP Kinase Kinase Kinase Kinase AT1G23700 50.8 3.9e-75 279.3
Lsi05g01693 CCT 32 499 MAP Kinase Kinase Kinase Kinase AT4G14480 59.7 4.8e-142 501.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005838 1 3 1 1 1 0 2 1 0 1 1 1 2 1 1 2 0 3 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83606 PF00069 Pkinase 2.00E-68 CL0016 Lsi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02056 Lsi_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0