Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02061 ATGACTGGGAAAGAGATTCTCCACAAGATGAAGGAAGTTAGAGAGAGGCAAGCAGAAAAAGTTGGGTTGTGTTCGTCGGATCCAGACTCGGGAAAAGGAAAGAGCAAGATGTCCAAGCATGTCACACATGGTTTTCACTTGGTGGAAGGGAAATCAAATCATGCCATGGAAGATTACGTGGTTGCAGAGTTTAAGCAAGTTGATCATCATGAGCTTGGTTTATTTGCAATCTTTGATGGCCATTTGAGCAATTCTATTCCTGATTATTTACAGTCGCATTTATTTTCTAATATAATAAATGAGCCTGATTTCTGGACCGATCCAAAAAACGCAGTCAGGAAAGCATACGAGCAAACTGATGCTTACATTTTAGAGAAAGCTGTTGATTTTAGTCATGGGGGTTCAACTGCTGTTACGGCCATATTGATCGATTGTAAGACACTAGTAGTGGGCAATGTGGGGGACTCCCGTGCAGTTATCTGTAGTAACGGCAAGGCCAGACAATTGTCAATTGATCATGAGCCAAGCGTTGAGAGAAAAAACATCGAGGAAAGAGGTGGTTTTGTATCAAACTTTCCTGGAGATGTTCCACGTGTTGATGGGCAGTTGGCGGTCGCAAGGGCGTTTGGTGATAGGAGCTTAAAGAAACATTTGAGTTCGGAACCTTATGTGGTAATGGAGATGATAGATGACAAGACCGAATTTGTTATCTTGGCAAGTGATGGATTGTGGAAGGTTATGTCAAATGAAGAAGCCGTAGAGTCGATCAGGCATATAAAAGACGCCCATGCAGCTGCCAAACACCTGACAGAGGAGGCCCTCAAGAGGAAGAGCAAAGATGATATCTCTTGTATAGTTGTGAGATTTCACTGA 873 42.84 MTGKEILHKMKEVRERQAEKVGLCSSDPDSGKGKSKMSKHVTHGFHLVEGKSNHAMEDYVVAEFKQVDHHELGLFAIFDGHLSNSIPDYLQSHLFSNIINEPDFWTDPKNAVRKAYEQTDAYILEKAVDFSHGGSTAVTAILIDCKTLVVGNVGDSRAVICSNGKARQLSIDHEPSVERKNIEERGGFVSNFPGDVPRVDGQLAVARAFGDRSLKKHLSSEPYVVMEMIDDKTEFVILASDGLWKVMSNEEAVESIRHIKDAHAAAKHLTEEALKRKSKDDISCIVVRFH 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27731720 27735012 + Lsi04G020610.1 Lsi04g02061 662110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02061 290 Pfam Protein phosphatase 2C 54 282 IPR001932 -
Lsi04g02061 290 Gene3D - 23 290 IPR036457 -
Lsi04g02061 290 ProSiteProfiles PPM-type phosphatase domain profile. 42 289 IPR001932 -
Lsi04g02061 290 PANTHER PROTEIN PHOSPHATASE 2C 1 289 IPR015655 GO:0004722|GO:0006470
Lsi04g02061 290 SUPERFAMILY PP2C-like 38 290 IPR036457 -
Lsi04g02061 290 MobiDBLite consensus disorder prediction 17 36 - -
Lsi04g02061 290 SMART PP2C_4 38 287 IPR001932 -
Lsi04g02061 290 PANTHER PROTEIN PHOSPHATASE 2C 39-RELATED 1 289 - -
Lsi04g02061 290 CDD PP2Cc 50 289 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02061 Lsi-Chr4:27731720 Lsi11g01704 Lsi-Chr11:25194324 1.48E-130 dispersed
Lsi09g01339 Lsi-Chr9:21336948 Lsi04g02061 Lsi-Chr4:27731720 6.23E-10 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02061 K17506 - csv:101215129 530.02