Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02062 ATGGAAAGCCACTTCATTCTAGCTAGGATGCTCAGAAGATGCAGTGTAAGGGGAGCTGTACCACCCACCAGCCCTCCTGAAGTATGCAGATTTAACTCAGGTTCCTATATTTTTGCTCGCATCAATTCCACAAGCAGCATCAACACCACCACCATCGCTCCCGCCACCAAGCTGCCGAAGTTGGCAATGGAGGCGAAGAGCTTTGAAGGCAAGCATAACTTCAAAGATAAGGCCTACAAGGAAGGCATGGTCGATGACGATTTAGAATACGAGACGGAGGAGGAGGAGGTTGGTGGAGGATGCCATGGTGGTACCAATGCTGGCAATGCATTGGGTTATTTTGAGAATGAGAAAAAGAAAAAAGGGGCAGCGGTTTCTGGCCGTGGAAGGTCTGGTGGAGGCGTCTCTTCGCCGAGTTGCCAAGCGCACAACTGTGCAACAGATTTGAGTGAAGCAAAGAGGTATCACCGGCGCCACAAGGTTTGCGAGTTTCACTCGAAGGCAGCAGTCGTTGTGGTTGCTGGAATTCGCCAGCGTTTCTGTCAGCAATGCAGCAGGTTCCATGAGTTAACAGAATTTGATGAAGCAAAAAGGAGCTGTCGCCGGAGGCTGGCAGGGCACAACGAACGGCGGCGTAAGAGCTCGGCAGAGTGCCAAGGGGAAAGCACAAGCCGGAAAGGATCAGCCCCGCAGTCAAAGGAAAGCCATTGCAGGCAACTGGTGGAAGATCAAAGAAGCAGAATTCAGATGGCTCCTCCAGGAAGTTCTGGCTATAAACACTTGCATATCAGATAA 795 51.07 MESHFILARMLRRCSVRGAVPPTSPPEVCRFNSGSYIFARINSTSSINTTTIAPATKLPKLAMEAKSFEGKHNFKDKAYKEGMVDDDLEYETEEEEVGGGCHGGTNAGNALGYFENEKKKKGAAVSGRGRSGGGVSSPSCQAHNCATDLSEAKRYHRRHKVCEFHSKAAVVVVAGIRQRFCQQCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTSRKGSAPQSKESHCRQLVEDQRSRIQMAPPGSSGYKHLHIR 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27734848 27737399 - Lsi04G020620.1 Lsi04g02062 662111

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02062 264 MobiDBLite consensus disorder prediction 205 264 - -
Lsi04g02062 264 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 70 264 - -
Lsi04g02062 264 SUPERFAMILY SBT domain 138 217 IPR036893 GO:0003677|GO:0005634
Lsi04g02062 264 Pfam SBP domain 140 213 IPR004333 GO:0003677
Lsi04g02062 264 MobiDBLite consensus disorder prediction 220 235 - -
Lsi04g02062 264 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 70 264 IPR044817 GO:0003677
Lsi04g02062 264 ProSiteProfiles Zinc finger SBP-type profile. 137 214 IPR004333 GO:0003677
Lsi04g02062 264 Gene3D - 130 201 IPR036893 GO:0003677|GO:0005634
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02062 - - - csv:101215375 314.309
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02062 Lsi-Chr4:27734848 Lsi09g01630 Lsi-Chr9:24584950 4.02E-37 dispersed
Lsi04g02062 Lsi-Chr4:27734848 Lsi02g00137 Lsi-Chr2:1113659 1.26E-32 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g192 . . . Bda09g00515 . . . . . . . Cma09g00854 . Car09g00768 Sed04g2406 Cpe06g00681 . Bhi09g03443 Tan01g4381 Cmetu07g2111 . Hepe01g1395 Mch11g1055 . Cla11g01751 Cam11g1819 Cec11g1839 Cco11g1845 Clacu11g1979 Cmu11g1789 Cre11g2196 Cone6ag0159 Cone9ag0183 . . Lsi04g02062 Csa04g02332 Chy07g00064 Cme07g00585 . . . . . . . . . . Cmo09g00847 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002919 1 2 1 1 2 1 2 2 1 1 2 2 2 1 1 2 1 3 2 2 1 2 2 2 2 2 2 2 2 2 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25245 PF03110 SBP 5.60E-31 No_clan Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02062 Lsi_Chr04 FPKM 47.166332 52.730911 7.584239 6.106259 6.450238 7.057085 6.442295 33.840191 36.533779 35.780819