Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02065 ATGGCGTTCTCTAGATCTCTCTCACTTTCTCTCTGCATTTTCTTCCCCTGTTTTCTCTCCCTCTCTCAAGCTTATACGTTCTACGTCGGTGGAAAAGATGGGTGGGTTCTCAACCCTTCTGAGACCTACGATAATTGGGCTCATCGAAACAGGTTTCGAGTCAATGACGTTCTGGTGTTCAAGTATGCAAGAGGGTCGGATTCTGTGCTGGTGGTGAGTAAAGAGGATTATGAGAAGTGTGATTTGAAGAATCCGATTGTTAAATTGGAAGATGGGAATTCGGAGTTTAAATTTGATCGTTCTGGAGCTTTCTATTTTGTTAGTGGGAAGCAGGGGAGCTGTGAAAAGGGCCAGAAATTGGTGGTCGTTGTTATGGCTCTGCGCTCTCTGCCTCCGCCCTCCACGGTGGGCTCTCCGCCACCTTCTGGAGTTAAGCCGCCACAGGTTTCTCCATCTCCGCCGTCTACTTCGCCGTATCCCGGAGGAAAATCGCCTTCGGGAACACCCACTTCACCTTCTCCACCTGGGGCTAAATCTCCGGTGACAGCTCCGGTGCCATCAGGTTCTCATTCTCCTGGCGCAAAATCTCCTTCTGGTTCTCCGCCGTCATCAGGGATACCTATTTTGCCAACTCCGCCGTCGGGAACACCCAGTTCACCATCTCCTTCTGAATCTCATGCTCCAGTGCCATCAGGTTCTCATTCTCCTGGTTCGCCGTATCCGGGAGCTAAATCTCCTTCTAGTTCTCCGCCGTCAGGGACACCTAGTTCGCCGTCGCCGTCGTCAGGAACCCCTATTTTGCCATCTCCGCCGTCGGGAACACCCAGTTCACCATCTCCTTCTGGGTCTCATGCTCCGGCGCCGTCAGGTTCTCATTCCCCTGGTTCGCCTTATCCTGGAGCTAAATCTCCTTCTAGTTCTCCGCCGTCGGGGGCACCTAATTCGCCGTCGCCGTCGTCAGGAACCCCTATTTTTCCATCTCCGCCGTCAGGAACACCAAGTTCACCGTCTCCTTCTGAGTCTCATTCTCCTGGTTCGCCGTATCCCGGAGCTAAATCTCCTTCTGGTTTTTCGCCGTCGGGAACACCAACCTCACCATCTCCGTCATCTGGAACACCCACTTCTCCGTCTCCGTCTGGGTCTGAAACTCCAGTTACCACACCAGTGCCGGCTGGTTCCCCGTCTTCGCCATATCCGGGAGCTAAATCTCCGACGCCGGGAACACCCACTTCGCCGTCTCCATCTGGTTCTGAAACTCCGGTGACCACTCCAGTGCCGGTTGGTTCCCCATCTTCGCCATATCCCGGAGCTAAATCTCCGTCGTCAGGAACACCCACTTCGCCGTCTCCATCTGGGTCTGAAACTCCAGTGACCACACCAACGCCGATCGGTTCTCCCACATCACCTTACCCTGGAGCAAGCTCTCCGTCAGGGTCACACATTTCGCCGTCTCCTTTTGGTTCTGAAACTCCGACGACGACACCAGTCCCAGCCGGTTCTCCGACTTCCCCATTACCTGGAGCAATCTCTCCATCGGGATCACCCTTTTCACCACCCCCCGGCGGCGCTGCCTCTCCGGGAACATCCCCCGCGGGTTCACCATCTTCAGGATCAAATTCTCCGACCACATCGCCATCTCCAGCCAGCGCCATAACTCCGATAACAGCTCCGGTGCCGGCATTTTCACCGAGTTCATTCTCTCCGATTATCTCTCCAGTGTTATCGCCGTCGATCGAACCGCCAGTCGGGTCGCCAGTACCATCGCTACTCCCACCGGAGGCTGGTGGTGTTCCAGTAAGTTCTCCGCCATCTCCACCATTACCTCCATCGTCTTCCTCCGGACCAGCACCATCACCAACCAGCACTGCAAATGATAGAACAACATCAGGACCACGATCGTCTGCCATAGCTTCAACTCCGTCGGTAATTTTGTTCAGTTCCATTATCGTTGTGTTAAGCATGGTCATCAATGACGGAATGATTAAGAACTTCACTTAA 1998 54.15 MAFSRSLSLSLCIFFPCFLSLSQAYTFYVGGKDGWVLNPSETYDNWAHRNRFRVNDVLVFKYARGSDSVLVVSKEDYEKCDLKNPIVKLEDGNSEFKFDRSGAFYFVSGKQGSCEKGQKLVVVVMALRSLPPPSTVGSPPPSGVKPPQVSPSPPSTSPYPGGKSPSGTPTSPSPPGAKSPVTAPVPSGSHSPGAKSPSGSPPSSGIPILPTPPSGTPSSPSPSESHAPVPSGSHSPGSPYPGAKSPSSSPPSGTPSSPSPSSGTPILPSPPSGTPSSPSPSGSHAPAPSGSHSPGSPYPGAKSPSSSPPSGAPNSPSPSSGTPIFPSPPSGTPSSPSPSESHSPGSPYPGAKSPSGFSPSGTPTSPSPSSGTPTSPSPSGSETPVTTPVPAGSPSSPYPGAKSPTPGTPTSPSPSGSETPVTTPVPVGSPSSPYPGAKSPSSGTPTSPSPSGSETPVTTPTPIGSPTSPYPGASSPSGSHISPSPFGSETPTTTPVPAGSPTSPLPGAISPSGSPFSPPPGGAASPGTSPAGSPSSGSNSPTTSPSPASAITPITAPVPAFSPSSFSPIISPVLSPSIEPPVGSPVPSLLPPEAGGVPVSSPPSPPLPPSSSSGPAPSPTSTANDRTTSGPRSSAIASTPSVILFSSIIVVLSMVINDGMIKNFT 665
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27778890 27781458 + Lsi04G020650.1 Lsi04g02065 662114

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02065 665 MobiDBLite consensus disorder prediction 184 202 - -
Lsi04g02065 665 CDD OsENODL1_like 25 125 IPR041846 -
Lsi04g02065 665 SUPERFAMILY Cupredoxins 24 125 IPR008972 -
Lsi04g02065 665 MobiDBLite consensus disorder prediction 511 525 - -
Lsi04g02065 665 MobiDBLite consensus disorder prediction 470 496 - -
Lsi04g02065 665 MobiDBLite consensus disorder prediction 132 557 - -
Lsi04g02065 665 Gene3D - 23 129 IPR008972 -
Lsi04g02065 665 MobiDBLite consensus disorder prediction 528 551 - -
Lsi04g02065 665 MobiDBLite consensus disorder prediction 570 636 - -
Lsi04g02065 665 MobiDBLite consensus disorder prediction 616 636 - -
Lsi04g02065 665 PANTHER EARLY NODULIN-LIKE PROTEIN 2 1 337 - -
Lsi04g02065 665 MobiDBLite consensus disorder prediction 390 413 - -
Lsi04g02065 665 MobiDBLite consensus disorder prediction 278 300 - -
Lsi04g02065 665 PANTHER BLUE COPPER PROTEIN 1 337 IPR039391 GO:0009055
Lsi04g02065 665 MobiDBLite consensus disorder prediction 133 181 - -
Lsi04g02065 665 PRINTS Proline rich extensin signature 230 255 - -
Lsi04g02065 665 PRINTS Proline rich extensin signature 129 141 - -
Lsi04g02065 665 PRINTS Proline rich extensin signature 186 202 - -
Lsi04g02065 665 PRINTS Proline rich extensin signature 154 175 - -
Lsi04g02065 665 PRINTS Proline rich extensin signature 209 226 - -
Lsi04g02065 665 MobiDBLite consensus disorder prediction 344 389 - -
Lsi04g02065 665 Pfam Plastocyanin-like domain 35 118 IPR003245 GO:0009055
Lsi04g02065 665 ProSiteProfiles Phytocyanin domain profile. 25 126 IPR003245 GO:0009055
Lsi04g02065 665 MobiDBLite consensus disorder prediction 243 277 - -
Lsi04g02065 665 MobiDBLite consensus disorder prediction 220 242 - -
Lsi04g02065 665 MobiDBLite consensus disorder prediction 203 219 - -
Lsi04g02065 665 MobiDBLite consensus disorder prediction 301 343 - -
Lsi04g02065 665 MobiDBLite consensus disorder prediction 434 461 - -
Lsi04g02065 665 MobiDBLite consensus disorder prediction 574 615 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02065 - - - csv:101218690 231.491
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi04g02065 Lsi08g01251 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01232 Lsi-Chr4:19152350 Lsi04g02065 Lsi-Chr4:27778890 2.74E-23 dispersed
Lsi04g02065 Lsi-Chr4:27778890 Lsi05g00619 Lsi-Chr5:7619886 1.12E-20 dispersed
Lsi10g00159 Lsi-Chr10:2565306 Lsi04g02065 Lsi-Chr4:27778890 2.20E-25 dispersed
Lsi02g00157 Lsi-Chr2:1310933 Lsi04g02065 Lsi-Chr4:27778890 7.36E-26 transposed
Lsi02g01618 Lsi-Chr2:22047984 Lsi04g02065 Lsi-Chr4:27778890 1.20E-26 transposed
Lsi02g01821 Lsi-Chr2:24017037 Lsi04g02065 Lsi-Chr4:27778890 4.02E-22 transposed
Lsi02g03006 Lsi-Chr2:36137097 Lsi04g02065 Lsi-Chr4:27778890 1.48E-24 transposed
Lsi03g01554 Lsi-Chr3:26505841 Lsi04g02065 Lsi-Chr4:27778890 2.67E-08 transposed
Lsi07g01117 Lsi-Chr7:16596660 Lsi04g02065 Lsi-Chr4:27778890 1.20E-21 transposed
Lsi10g01609 Lsi-Chr10:20579312 Lsi04g02065 Lsi-Chr4:27778890 2.34E-43 transposed
Lsi04g02065 Lsi-Chr4:27778890 Lsi08g01251 Lsi-Chr8:20976998 4.69E-28 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g584 . . . . Bpe02g01264 . . . Cmo05g00351 Cmo12g00319 . Cma05g00347 . Car12g00349 Sed11g1139 Cpe07g00325 . Bhi04g00052 Tan02g2764 Cmetu03g2012 . Hepe10g0215 . Lcy13g1834 . . . . . . . . . Cone17ag0978 Cone20ag0319 Lsi04g02065 . . . . . Bda01g01015 . . . . . . . . . Cma12g00366 . Car05g00293 . . . . . . . . . Cla08g01369 Cam08g1838 Cec08g1417 Cco08g1549 Clacu08g1533 . Cre08g1316 Lsi08g01251 . Chy03g01081 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002701 2 2 1 2 4 1 2 2 1 2 2 2 2 2 2 2 1 1 2 2 2 2 1 2 2 2 2 1 2 1 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02065 Lsi_Chr04 FPKM 9.419697 9.639902 11.661913 12.225314 11.156161 10.036122 12.343843 16.984613 17.303862 18.647192