Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02066 ATGTCTAGAGGAACAGACCATCTGGTGAAGAATTTGAAGAAATTCGCTGACTTTCAGTACAAGCTTTTCACAACTCGATATGGGCAGCAAGTCATTGACATACTCGAGTTCCCATTTAAGGTGGTCTTATCCCCTTTCACGCTTCCTTTCGACATTGCCGGCTCAGCTCCTCGTGGCTTCGGCGTTCCCGAGCTCATTTCCAAGCTCTCATATGCTTCAATCTTTGCTATTGCTACTTTTGGGACTTATGATATTGCGCTAGAGCTAGGAAAGAAAGTTATATGTCAGAGGCACTGTCAAACCTGCAATGGATGGCAAGCCATGCGGTGTACCAAGTGCAGAGGGTCAGGGATGGTGAACTACCAAGTGAAGAACTATGAATTGAGAAGTGGAGAGAAGGCAACAGCAGAAAGTATTGCAGATGCCATTGCAGAGAATCGGGCTGAGTTGATTCACCTTCCTTCCACTTTGGATCTTCATACACCATTGCCATCCAAAAATTGCCCAACATGTGATGGAACGGGAGTGATGAGCTGCCCTGAATGCAAGAATAAATTGCAAGTGAGAATCTCAGCAGATGATATCATGGAGCCTCCTTGGAAAGCTTATAATGTTCTGAGAAAGATGGAATATCCATATGAGCATTTAGTTCAGAGTATGAAGGACCCAAGCATTGCCACATTTTGGTTAATTACTTTCCCTCAAATTGTTGGTGGATTCAACTTTGATGATGATGTCAAGCAAAAGATTTGGTGGCAGTACAAGGAATCCATGCGATATGATCAACTCAGAGATGCTGTTGCTAAGCGGAAACCTGGATGGGAGTACTTACAGGAAGCCTTGATTTCCATAGACCCTGTTCGGGCCAGGGATGACCCTGTGGTCGTGAAAAACATTCCTTACTACAAGGCCAAGAAAACACTTGAGGCAGAAGTGATGAAGCTTGATCCTCCACCACGGCCACAAAATTGGGGTGATTTGGACCTTCCACTGAATTCATCTTCTTGGAGTCAGGATGATCTTAAAGACCCGGGAAAATTTTATGAAATGACTGTACTTCTAAATGCCCAAAGAGAGATTGCTGATAAAATCTTGGATGCACAGTGGGAAACGAAATGGCGGCAGGAAAAGTTGAACGAGTTGTTGGAGGAAAAGCTGCGGCCTTATGTTAAGAGTGTCAACAGCAATGTCCTTACAGCACCAATCGTGTTGAAAGAAACCGACGGCGACGATTTTGGTTCTTTTGACAACGTCCCATCTTTTCGCGTCAAAGAGCCTGTTGGGCATCCTAAGCTAGTTCTGAAACACAGGATTCTTCGCGACATTCTTTCTTAA 1335 44.42 MSRGTDHLVKNLKKFADFQYKLFTTRYGQQVIDILEFPFKVVLSPFTLPFDIAGSAPRGFGVPELISKLSYASIFAIATFGTYDIALELGKKVICQRHCQTCNGWQAMRCTKCRGSGMVNYQVKNYELRSGEKATAESIADAIAENRAELIHLPSTLDLHTPLPSKNCPTCDGTGVMSCPECKNKLQVRISADDIMEPPWKAYNVLRKMEYPYEHLVQSMKDPSIATFWLITFPQIVGGFNFDDDVKQKIWWQYKESMRYDQLRDAVAKRKPGWEYLQEALISIDPVRARDDPVVVKNIPYYKAKKTLEAEVMKLDPPPRPQNWGDLDLPLNSSSWSQDDLKDPGKFYEMTVLLNAQREIADKILDAQWETKWRQEKLNELLEEKLRPYVKSVNSNVLTAPIVLKETDGDDFGSFDNVPSFRVKEPVGHPKLVLKHRILRDILS 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27787420 27807445 - Lsi04G020660.1 Lsi04g02066 662115

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02066 444 PANTHER EMBRYO DEFECTIVE 2737 1 409 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02066 - - - csv:101204848 745.347
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g200 . . . . . . . . . . . Cma09g00858 . Car09g00773 Sed04g2404 Cpe06g00684 . Bhi09g03437 Tan01g4387 Cmetu07g0477 . . Mch11g1063 . Cla11g01756 Cam11g1823 Cec11g1843 Cco11g1850 Clacu11g1983 Cmu11g1793 Cre11g2200 . . Cone14ag1059 Cone15ag1051 Lsi04g02066 Csa04g02337 Chy07g00068 . . . . . . . . . . . Cmo09g00850 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009235 2 2 1 1 2 0 1 1 0 1 1 1 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02066 Lsi_Chr04 FPKM 4.045113 4.523052 4.314037 3.857343 15.227394 13.323082 15.481814 1.842538 2.414381 2.694993