Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02067 ATGGCAACGGCATCAGATGTGGGTGTGAACGGAGAGAAGAGGGCTAAGCTATCTCCTGATTTGTTGCAGAGCAAGGGGGTCCATGAAACTAAGGCTCTACTTTCAGAGCTATGCCGCCATTTTTATGGGCTTGGATGGGTCTCTGGAACTGGCGGTAGTATCACCATCAAGGTCCATGATGATGCTATTCCCAAGCAGAATCAGCTCGTCGTCATGTCCCCTTCTGGCGTTCAGAAGGAGCGAATGGTACCGGAGGACATGTACGTGTTATCTCCTGATGGTTCTGTCTTATCTTCTCCTACTGTGAAGCCATACCCACACAAGCCTCCAAAATGTTCAGACTGTGGTCCCCTTTTTATGAAGGCATATCAGATGCGAGATGCTGGAGCTGTTATTCACAGTCATGGGATAGAATCATGCCTTGCAACAATGATCGATCCATCAGCAAAGGAATTTAGAATTACTCATATGGAAATGATCAAAGGAATCAAAGGGCATGGTTACTATGACGAACTTGTGATCCCAATAATAGAAAATACAGCTTACGAATATGAGCTCACAGAATCTTTAGCTATAGCAATTGAAGCCTACCCAAAAACAACTGCTGTGCTTGTTCGAAACCATGGCATTTATGTATGGGGGGATTCATGGATCCATGCAAAAACTCAGGCTGAATGTTACCACTATCTCTTTGATGCGGCCATCAAGCTTTATCAATTGGGCCTAGACTGGTCTACCCCAAATCATGGTCCCATTCAGAAAGTCAAAGAAGTTGTAGTAGGTGGATGCAACAATGAAGCATCTTCGAAGTGTTGCATTGTTCTTGATATAGAAGGAACTACTACTCCAATATCGTTTGTGACCGATGTTCTTTTTCCATATGCTCGCGATAATGTCCACAAACATTTGTCTCTAACGTTTGACACTGCAGAGACTAAAGAAGATATTAAGTTGTTGCGATCTCAGGTGCAAGATGATCTGGAAAAAGGTGTTGCTGGTGCGGTGCCTATTCCTCTTGATGATTCTGCAAAAGAGGAGGTTATTGCAGCCATAGTTGCGAATGTCGAAGCCATGATAAAAGCTGACAGGAAGATTCCTGCTCTAAAACAGTTACAAGTATACATATACTCAAGCGGCAGTAGGTTAGCACAGAGGCTTCTATTTGGAAATACAAAATATGGGGATCTGAGAAAATATTTATCTGGATATTTCGATACCACAGTGGGGAACAAAAGAGAAACGCGCAGTTATGTCGAAATCAGAGAGTCTGTTGGAGTTGATAAGCCATCAGAAATTTTGTTTGTCACTGATGTTTTCCAGGAAGCTGTAGCTGCAAAAGCAGCAGGATTGGATGTGCATATATCCATACGACCCGGCAACGCTCCTCTTCCAGACAATCATGGGTTCAAAACCATTCAATCTTTTTCAGAAATTTGA 1437 43.01 MATASDVGVNGEKRAKLSPDLLQSKGVHETKALLSELCRHFYGLGWVSGTGGSITIKVHDDAIPKQNQLVVMSPSGVQKERMVPEDMYVLSPDGSVLSSPTVKPYPHKPPKCSDCGPLFMKAYQMRDAGAVIHSHGIESCLATMIDPSAKEFRITHMEMIKGIKGHGYYDELVIPIIENTAYEYELTESLAIAIEAYPKTTAVLVRNHGIYVWGDSWIHAKTQAECYHYLFDAAIKLYQLGLDWSTPNHGPIQKVKEVVVGGCNNEASSKCCIVLDIEGTTTPISFVTDVLFPYARDNVHKHLSLTFDTAETKEDIKLLRSQVQDDLEKGVAGAVPIPLDDSAKEEVIAAIVANVEAMIKADRKIPALKQLQVYIYSSGSRLAQRLLFGNTKYGDLRKYLSGYFDTTVGNKRETRSYVEIRESVGVDKPSEILFVTDVFQEAVAAKAAGLDVHISIRPGNAPLPDNHGFKTIQSFSEI 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27809903 27817347 + Lsi04G020670.1 Lsi04g02067 662116

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02067 478 PANTHER BIFUNCTIONAL METHYLTHIORIBULOSE-1-PHOSPHATE DEHYDRATASE/ENOLASE-PHOSPHATASE E1-RELATED 6 372 - -
Lsi04g02067 478 TIGRFAM salvage_mtnB: methylthioribulose-1-phosphate dehydratase 34 239 IPR017714 GO:0005737|GO:0019509|GO:0046872
Lsi04g02067 478 Hamap Methylthioribulose-1-phosphate dehydratase [APIP]. 19 243 IPR027514 GO:0005737|GO:0019509|GO:0046872
Lsi04g02067 478 Gene3D - 274 466 IPR023214 -
Lsi04g02067 478 Hamap Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1. 19 478 IPR027505 -
Lsi04g02067 478 Gene3D - 284 355 - -
Lsi04g02067 478 PANTHER METHYLTHIORIBULOSE-1-PHOSPHATE DEHYDRATASE 6 372 IPR017714 GO:0005737|GO:0019509|GO:0046872
Lsi04g02067 478 SUPERFAMILY AraD/HMP-PK domain-like 29 250 IPR036409 -
Lsi04g02067 478 PANTHER METHYLTHIORIBULOSE-1-PHOSPHATE DEHYDRATASE 372 478 IPR017714 GO:0005737|GO:0019509|GO:0046872
Lsi04g02067 478 Gene3D - 27 252 IPR036409 -
Lsi04g02067 478 SMART Aldolase_II_2 32 235 IPR001303 -
Lsi04g02067 478 Pfam Class II Aldolase and Adducin N-terminal domain 34 234 IPR001303 -
Lsi04g02067 478 SUPERFAMILY HAD-like 273 478 IPR036412 -
Lsi04g02067 478 PANTHER BIFUNCTIONAL METHYLTHIORIBULOSE-1-PHOSPHATE DEHYDRATASE/ENOLASE-PHOSPHATASE E1-RELATED 372 478 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02067 K16054 DEP1; methylthioribulose 1-phosphate dehydratase / enolase-phosphatase E1 [EC:4.2.1.109 3.1.3.77] - csv:101205098 902.123
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02067 Lsi-Chr4:27809903 Lsi05g00141 Lsi-Chr5:2077105 4.37E-44 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g201 . . . . Bpe09g00237 . . Bma13g00947 Cmo16g00433 . Cma01g01212 . Car01g01036 . Sed04g2403 . Cpe02g00698 Bhi09g03436 Tan01g0815 . . Hepe01g1391 . . Cla11g01757 Cam11g1824 Cec11g1844 Cco11g1851 Clacu11g1984 Cmu11g1794 Cre11g2201 Cone6ag0152 Cone9ag0177 . Cone15ag1052 Lsi04g02067 Csa04g02338 Chy07g00069 . . Blo10g00760 . Bda12g00837 . . . . . Cmo01g01266 . . Cma16g00399 . Car16g00364 Cpe14g00336 . . . . . . . . . . . . . . . . . Chy06g01160 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002536 1 3 1 2 1 1 2 1 1 2 2 2 2 2 2 2 1 3 1 2 2 2 2 2 2 2 2 4 3 2 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02067 Lsi_Chr04 FPKM 0.077295 0.0 3.051748 2.63529 1.06785 0.637062 0.498735 0.430206 0.536258 0.78078