Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02069 ATGGCTTCCTCCACTTCATACTTCACTACGCCAACCAAAACCCCTTCAGAAAAGTCCTCCAGAAAGGTTCAGAACTCCAGCCGGATGGACGCCTCCGAGTCCAGATCCCGATTCGAAGCCTACAATCGTCTTCAGGCGGCGGCTGTGGCGTTTGGAGAGAAGCTTCCCATTCCTGAGATCGTTGCCTTGGGTGGTCAATCCGACGGCAAGAGCTCTCTCTTAGAAGCCCTTCTTGGATTCCGCTTCAATGTCCGCGAAGTCGAAATGGGGACTCGCAGGCCCTTGATCCTCCAAATGGTCCACGATCCGACTGCTCTCGAGCCCCGCTGCCGATTTCAGGAGGAAGATTCTGAAGAATATGGACATCCTATTGTTTTAGCATCTGCTATTGCAGACATTATAAAGTCTAGAACTGACGCACTGTTGAAGAAGACCAAAAGTGCAGTTTCTTCCAAGCCAATTGTAATGAGAGCAGAATATGCACATTGCCCCAACCTTACCATTATCGATACCCCTGGCTTTGTTCTTAAGGCAAGGAAGGGAGAGCCAGAAAGCACTCCAGAAGAAATTCTTTCAATGGTGAAGTCCCTTGCAAGTCCTCCCCATCGTATCCTCTTGTTCCTTCAACAAAGTAGTGTAGAATGGTGTTCATCCTTGTGGTTAGATTCGATTCGTGAAATTGATCCAGCTTTCAGACGGACAATAGTTGTTGTCTCTAAATTTGATAATCGTCTGAAGGAATTTGGTGACCGATGGGAAGTGGATAAATATTTGAGTGCCAGTGGTTACCTAGGAGATAACACGCACCCATTTTTTGTGGCCTTGCCAAAGGATAGAAATACTGTTTCTAATGATGAATTTCGCCGACAAATATCTCAAGTGGATTCTGAAGTTCTTCGTCATCTACGTGATGGTGTCAAGGGCGGGTTTGATGAAGAGAAATACAGGTCTTACATTGGTTTTGGCTGCCTCAGGGAATATTTAGAATCCGAGCTTCAAAAGAGATACAAGGAAGCTGCTCCAGCAACTTTGGCTTTGTTAGAGCAACGTTGTGTTGAAGTTGCATCTGAACTATGTAGAATGGAGTCAAAAATACAAGCTACTTCAGATATTGCGCATCTTAGGAGATCCGCTATGTTGTATACAGCTTCTATCAGCAATCATGTGGTGAGTAGTTTCTTGACGTTGACATTTGTGATTGTAGGAGCTGCAGATCCTGCCCCAGAGCAATGGGGGAAAACTACTTTGGAGGAACAGTCAGGAAGTGGTATTGGAAGTTGGCCTGGTGTTATATCAGAAGTCAAACCTGCCAACTCTAGCCTTCGGTTGTATGGTGGTGCTGCTTTTGAAAGAGTAATGTTTGAGTTTCGATGTGCTGCTTACTCCATTGAGTGCCCTTCAGTAGCAAACATATTACTTGCTCATGCTGGCAAACGTGGAGGTAGGGGATTGACTGAGGCAGCTGCAGAGATTGCTCGTGCTGCTGCACGATCATGGCTTGCTCCTCTTCTAGATACTGCTTGTGATCGTCTTGCTTTTGTATTGGAAAATCTTTTTGATCTTGCTCTAGAAAGAAATCGTGCTTATGAATCACAAAATGGGAAGAAGCACTGTAACATGGATGGCTACATTGGTTTTCATGCTGCTTTAAGGCATGCCTACAATCGTTTTCTGAAGGATCTTGCTAAACAGTGCAAGCAACTACTTCGTCACCACCTTGATTCTGTTACAAGCCCATATTCACTTGTTTGCTATGAGAATAACTTTGAAGGAGGCTCTCTCTCAAATGCATCATCTTTTCAGAAAATCAATCGGGTTTCTGCAGGTTTGTTCTCGTTCGAATTATCTGATTGTGGGGGAGCATCTCGCGATGAAACAATGAAGGACCAGGAGAACATACCTCCAGAAACGAACATACAGCAGATAACACCAGGAAAAGGTACAGAATCTAGAGAAGCCCTTCGAGAATGCCAAATGACCGTTCCTGAGACTCCATCACCAGAACAACCTAATGATGCTGGGTATGGAGTAAAGAAGGAACTTGGGAATGGGATGGATATTGGAGTTCGAAAAAGAGTTTCAAGAGTCAGAAATTCTAGCCGGATAGGCGGTCAAGATGGTTGCGGAACTTTATTCGGTAATGGTGATGGAAGTTCAAGATGTAGCTCAGCTTACACAGAAATTTGCTCATCTGCAGCGCAACATTTTGCTCGGATTCGTGAAGTTCTCATTGAGCGAAGTGTGATGTCTACACTGAATTCTGGATTCTTAACACCTTGTCGAGAAAGACTTGTAGTGGCACTTTCTTTGGAATTATTTGCCGTGAATGACGAGAAGTTCACAGACATGTTCGTAGCTCCAGGTGCTATTGAGGTACTTCAGAATGAAAGGCAGTCTCTTCAGAAGCGTCAAAAGACACTACAAACATGTCTGAATGAGTTCAAAACTGTAGCTCAAACACTTTGTTGA 2469 44.43 MASSTSYFTTPTKTPSEKSSRKVQNSSRMDASESRSRFEAYNRLQAAAVAFGEKLPIPEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMVHDPTALEPRCRFQEEDSEEYGHPIVLASAIADIIKSRTDALLKKTKSAVSSKPIVMRAEYAHCPNLTIIDTPGFVLKARKGEPESTPEEILSMVKSLASPPHRILLFLQQSSVEWCSSLWLDSIREIDPAFRRTIVVVSKFDNRLKEFGDRWEVDKYLSASGYLGDNTHPFFVALPKDRNTVSNDEFRRQISQVDSEVLRHLRDGVKGGFDEEKYRSYIGFGCLREYLESELQKRYKEAAPATLALLEQRCVEVASELCRMESKIQATSDIAHLRRSAMLYTASISNHVVSSFLTLTFVIVGAADPAPEQWGKTTLEEQSGSGIGSWPGVISEVKPANSSLRLYGGAAFERVMFEFRCAAYSIECPSVANILLAHAGKRGGRGLTEAAAEIARAAARSWLAPLLDTACDRLAFVLENLFDLALERNRAYESQNGKKHCNMDGYIGFHAALRHAYNRFLKDLAKQCKQLLRHHLDSVTSPYSLVCYENNFEGGSLSNASSFQKINRVSAGLFSFELSDCGGASRDETMKDQENIPPETNIQQITPGKGTESREALRECQMTVPETPSPEQPNDAGYGVKKELGNGMDIGVRKRVSRVRNSSRIGGQDGCGTLFGNGDGSSRCSSAYTEICSSAAQHFARIREVLIERSVMSTLNSGFLTPCRERLVVALSLELFAVNDEKFTDMFVAPGAIEVLQNERQSLQKRQKTLQTCLNEFKTVAQTLC 822
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27847744 27852634 - Lsi04G020690.1 Lsi04g02069 662118

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02069 822 Gene3D - 24 388 IPR027417 -
Lsi04g02069 822 MobiDBLite consensus disorder prediction 1 35 - -
Lsi04g02069 822 SMART dynamin_3 34 268 IPR001401 GO:0003924|GO:0005525
Lsi04g02069 822 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 54 341 IPR030381 GO:0005525
Lsi04g02069 822 PRINTS Dynamin signature 57 75 IPR022812 -
Lsi04g02069 822 PRINTS Dynamin signature 160 177 IPR022812 -
Lsi04g02069 822 PRINTS Dynamin signature 229 245 IPR022812 -
Lsi04g02069 822 PRINTS Dynamin signature 82 99 IPR022812 -
Lsi04g02069 822 MobiDBLite consensus disorder prediction 1 31 - -
Lsi04g02069 822 Pfam Dynamin family 60 240 IPR045063 -
Lsi04g02069 822 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 349 IPR027417 -
Lsi04g02069 822 PANTHER DYNAMIN 34 820 IPR022812 -
Lsi04g02069 822 PANTHER DYNAMIN-LIKE PROTEIN C 34 820 - -
Lsi04g02069 822 Coils Coil 790 810 - -
Lsi04g02069 822 CDD DLP_1 55 341 IPR001401 GO:0003924|GO:0005525
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02069 - - - bhj:120085297 1534.62
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00818 Lsi-Chr3:12369908 Lsi04g02069 Lsi-Chr4:27847744 4.30E-40 dispersed
Lsi04g02069 Lsi-Chr4:27847744 Lsi09g00692 Lsi-Chr9:7848628 3.30E-18 dispersed
Lsi04g02069 Lsi-Chr4:27847744 Lsi05g01898 Lsi-Chr5:26137755 1.37E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g204 . Blo03g01548 . . . Bpe08g01021 . . . . . . . . Sed06g0329 . Cpe02g00700 Bhi09g03433 Tan01g4390 Cmetu01g0301 . Hepe01g1389 Mch11g1066 . Cla11g01759 Cam11g1826 Cec11g1846 Cco11g1853 Clacu11g1986 . Cre11g2203 Cone6ag0150 Cone9ag0176 . . Lsi04g02069 Csa04g02340 Chy07g00071 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011471 0 1 1 0 1 0 1 1 0 1 1 0 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 2 1 2 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02069 Lsi_Chr04 FPKM 0.507246 0.414276 0.958862 0.973116 2.092375 2.302226 2.497702 1.045216 0.637877 0.648263