Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02071 ATGGGTGTTGAGGTTGTTGGATTTGAGATGGTCAAGGGACCGATGGATTCGGTATCGGCATCAGATGATTCTGTATTGAAAAGCAAGGAAAATGGAGATTCGGATCAATTGCCTGAAAAAAATGCGACCATAAAATTTGGTTCTCATGAAGATGAGCCTGTTAAAGAGCAGGCAGATGGTTCTTCAACCACCAATGTTCCAAAAGATGCTGCTGATGAATGGCCTGCACCTAAGCAAATCCATACCTTCTACTTCGTGAGGCATCGGGCGTATGACGATCCGAATGTCAAGGCTAAAATTGATTTGGCTGATAAAGAGATACAGAAGAGGAGTCAAGCTCGGTTTCAAATCACTGAAGCACTCAAGGGAAAAAGGGGGGAACGGGCAGAGTTGATTACTCAAATGAAAGCTCTGAGAGATGACAACCGGCAATTTAAATCAATTGTTGACGAGAAAATTAAGGAGATCGAACCTCTTAATCAAGCTCTTGGCAAGCTCCGTAATGCAAACAATGCTGGTCGCAATGGTGGTTTATGTTCATCTGAGGAAGAGCTTAATGCTGTTATTCAGAGCCTACAGTACCATATACAACATGAGAGCATTCCACTTTCTGAGGAAAAGCAAATTTTAAGAGAAATTAAACAGCTTGAAGGGACAAGGGAAAAAGTTATTGCTAATGCTGCTATGAGGGCAAAGCTTCAGGATTCAATGGTACATAAAGAAGCCCTCCAAGATCAAGTCAAGATTATCGGTGGCGATTTGGATGGAGTGAGGAAGGAACAACAAGCAGTTAGGGCCAAAATAAAGCAACTCGATGACGCCTTGAAGGCAATAGACAATGATATTAAAACTTTGCAGGATGAGCTAACTTCTGTTACAGAGAAGAGAGGCAGAGCTCATGAAAGCATTCAGCAACTTAGGAAAAACCGTGACGAGGGGAATGCCCACTTTTATCAAAGCCGATCACTCTTAAACAAAGCTAGAGACCTTGCTGCAAAGAAGGACGTCAAGGCCCTTGAGGAGCTTGCTTTTAATGAGGTTGAGAAGTTTATGTCCCTCTGGAATGGTGATAAGGCTTTCAGGGATGACTATGAGAAAAGAATTCTTCCATCGTTGGATGGTCGGCAGATGAGTAGGGATGGTCGGATAAGGAACCCTGATGAGAAGCCAATACTTGCGCCTGCAGAACTGGCACCACCTCAAACTGAGATGGCAGCGAAACCTAACATTAAACGAACTAAGGAAGAACCCAAACCAGTACCATCTGATGCTCCTCCTGCTCAGAAAGTTGATAAAGAAGTTAAACACAAAGCTGGAAAACCCATACACCCCTTGGAGCAAGAGGATAAAGCAGAGGAGGAGATCCCTGGTTTAGAAAAATTGTCAAAGGACATCCCTAAAGAACCTGAGGTTGATCTTGCAAAATTGAAGGAAATGAAGAGGGCTGAGGAAATCGCAAAAGCTAAACTAGCCATGGAAAGGAAGAAGAAATTGCAAGAGAAAGCAGCTGCAAAAGCCTCTCTACGAGCTCAAAAGGAAGCAGAAAAGAAATTGAAGGAAATTATTTTATATTTATACACATATAGTTGTCAGTTCTGA 1599 42.59 MGVEVVGFEMVKGPMDSVSASDDSVLKSKENGDSDQLPEKNATIKFGSHEDEPVKEQADGSSTTNVPKDAADEWPAPKQIHTFYFVRHRAYDDPNVKAKIDLADKEIQKRSQARFQITEALKGKRGERAELITQMKALRDDNRQFKSIVDEKIKEIEPLNQALGKLRNANNAGRNGGLCSSEEELNAVIQSLQYHIQHESIPLSEEKQILREIKQLEGTREKVIANAAMRAKLQDSMVHKEALQDQVKIIGGDLDGVRKEQQAVRAKIKQLDDALKAIDNDIKTLQDELTSVTEKRGRAHESIQQLRKNRDEGNAHFYQSRSLLNKARDLAAKKDVKALEELAFNEVEKFMSLWNGDKAFRDDYEKRILPSLDGRQMSRDGRIRNPDEKPILAPAELAPPQTEMAAKPNIKRTKEEPKPVPSDAPPAQKVDKEVKHKAGKPIHPLEQEDKAEEEIPGLEKLSKDIPKEPEVDLAKLKEMKRAEEIAKAKLAMERKKKLQEKAAAKASLRAQKEAEKKLKEIILYLYTYSCQF 532
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27855433 27859783 - Lsi04G020710.1 Lsi04g02071 662120

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02071 532 Coils Coil 473 515 - -
Lsi04g02071 532 PANTHER RNA-BINDING PROTEIN YLMH-RELATED 13 519 - -
Lsi04g02071 532 Coils Coil 254 295 - -
Lsi04g02071 532 MobiDBLite consensus disorder prediction 375 389 - -
Lsi04g02071 532 MobiDBLite consensus disorder prediction 12 72 - -
Lsi04g02071 532 MobiDBLite consensus disorder prediction 428 466 - -
Lsi04g02071 532 MobiDBLite consensus disorder prediction 375 466 - -
Lsi04g02071 532 Coils Coil 121 141 - -
Lsi04g02071 532 PANTHER PROTON PUMP-INTERACTOR 1 13 519 IPR029669 GO:0005783|GO:0005886|GO:0010155
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02071 - - - csv:101219165 927.932
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02071 Lsi-Chr4:27855433 Lsi04g02435 Lsi-Chr4:31404230 6.99E-39 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g215 . . . . Bpe09g00235 . Bma10g00497 Bma13g00953 . . Cma01g01209 Cma09g00862 Car01g01034 Car09g00775 Sed01g2386 Cpe06g00686 Cpe02g00701 Bhi09g03432 Tan01g4391 Cmetu07g0639 . Hepe01g1388 Mch11g1067 . Cla11g01760 Cam11g1827 Cec11g1847 Cco11g1854 Clacu11g1987 Cmu11g1796 Cre11g2204 Cone6ag0148 Cone9ag0173 . . Lsi04g02071 Csa04g02341 Chy07g00073 . . Blo10g00763 Bda05g00772 Bda12g00839 . Bpe03g00839 . . . Cmo01g01263 Cmo09g00852 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005212 2 1 2 3 2 0 1 1 0 1 1 1 2 0 1 2 0 2 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02071 Lsi_Chr04 FPKM 11.612613 14.376748 15.467618 12.584308 10.978819 15.097801 14.661798 28.410686 27.868259 28.102434