Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02073 ATGTTTGCGTATTGGCTTATGTGCAGCTTTAAGTGGATAACAATGGAGGCATCATCTGATCACCTTAGAAACCAGGATGATATATCTGGGGTTTGTGAGGAAGATATACTAGCTGACCCTTATGTGCGTTCTCATAAATGGAGTGATATTAGCTTGAGGCAATGGTTGGATAAGCCAGGAAGATCTGTGGATGCTCTTGAATGCCTACATATATTTAGGCAAATAGTGGAGATTGTTAATATTGCTCATGCTCAAGGCATTGTCGTTCACAATGTGCGCCCTTCATGCTTTGTGATGTCTTCTTTCAACCATGTAACCTTTATTGAGTCGGCATCATGTTCAGATTCTGGCTCTGATTCTCTTGAGGATGGCCTAAATAGTCAAATGGCAGAGGTTAAAACATCATCTTCTCCCTTTCCAAGCAGCCTTGGAAGCGAGGGTTTTCGATCTGTTATGACCCCCATAAACGCTTTGTCGGAAACTAGTTGCATGCAGTCAAGTTCAGTATATGCTGCTCAAGTATCGTTAAATGAAGGGTCTGGAAAAGGTAGGAAAAAAGATAGAAGACATATTGAAGAAACAGAAGATAAGATGCAATCATTTCCCATGAAACAGATATTGGCCATGGAGACTACATGGTACACTAGCCCAGAAGAGGCTTCTGATGGCCCAAGTTCCAGTGCTTCAGATATCTACCGGTTAGGAGTTCTTCTTTTTGAGTTATTCTGCTCCTTCAGCTCGAGAGAAGAGAAGAGTAGAACTATGTCCAGTTTGAGACATAGAGTGCTTCCTACTCAATTGCTGTTGAAGTGGCCGAAAGAAGCTTCATTTTGCTTATGGTTACTGCATCCTGAGCCAACTAATCGACCTAAGCTAAGGCGTCTCGTTTTCTACTTTTACAGTGAGTTATTGCAGAGTGAATTTCTCAATGAAACAAAAGATGACCTAGAAGAACGTGAAGCAGCAATCAAGCTACGAAAAAGAATTGAAGAGCAGGAGTTACTGCTAGAATTCCTTTTGCTTATGCAACAAAGAAAGCAGGAAGCTGCTCATAAGCTGCAAGATACTATTTCATTTCTGTGCAGTGATATTGAACAAGTTATGAGGCATCAAACTAATTTCAAGAAAAAGACTGGGTCACGCACAGATTTTGTGAAGGACAATCATTTATCATTAAATCACCCTTCAATGACTCTTGTCAGGAATACTGATTCTGCTGGTTTGGGATCAAGGAAGCGATTTAGGCCAGGAATTTTGACCCATGATATAGAAGCATGCGGTGATAATCTTGATGACTCTGAGAAGTCAAGTTCAGACAATGAAAATGAACAAGGTGTACTTTTTAAGAGTTCTCGATTAATGAAGAACTTCAAGAAATTGGAGTTAGCGTATTTTTTGATGAGAGGTAGAGTAAACAAGCCATCAAGGCAGTTTGTTAAACACTCGTCAATAAGTAGCGATGGTAGGGGGTCTGTAGTTTTGACTGAAAGAAGTTCAGTTAATAATTTGGCGTCAAAAGAGAGTTGCAATGATAATAGACAAGGTGGGTGGATAAGTCCGTTCCTGGAGGGTTTGTGCAAGTATCTATCCTTTAGCAAGTTAAAAGTCAAGGCAGACTTGAAGCAAGGAGATCTATTGAATTCCTCCAACTTAGTGTGTTCTCTCAGTTTTGATCGTGATGGAGAATTTTTTGCCACAGCTGGTGTTAATAGGAAAATTAAAGTGTTTGGGTATGACTCAATCGTGAACGAAGACCGTGATATTCATTACCCTGTTGTTGAAATGGCTAGCAGGTCAAAACTAAGCAGTGTTTGTTGGAATCGTTACATCAAAAGTCAAATTGCTTCAAGTAATTTTGAGGGTGTAGTGCAGGTATGGGATGTCACGAGAAGTCAAGTAGTCACTGAAATGGGAGAACATGAGAGGCGCGTATGGTCCATTGACTTCTCATCAGCGGAACCAACAATTTTGGCTAGTGGGAGTGATGATGGATCAGTTAAGCTCTGGAGTATCAATCAGGCAATTCTATTTTTGCACTTGGTGGATGGTATAAGTATTGGAACAATCAGAACAAAAGCCAATGTCTGCTGTGTACAATTTCCTGTGGATTCTGGTCGGTCCCTTGCATTTGGTTCAGCTGATCACAAAATTTATTACTATGACATGCGGAATATAAGAGTACCTTTGTGCACCTTCACTGGACATAACAAAACTGTGAGTTACGTCAAGTATATAGACTCAAGCACTCTTGTTTCTGCATCCACTGACAACACCTTGAAGCTCTGGGATTTGACCATGTGCACATCCCGGGTTGTTGATTCTCCAGTTCAGTCCTTCACGGGCCACATGAATATCAAGAACTTTGTGGGGCTGTCCGTCTCTGATGGTTACATTGCTACAGGTTCAGAGACAAATGAGGTTTTTATCTACCACAAAGCCTTTCCAATGCCAGCATTGTCGTACAAGTTTCAAATGGATCCTCTTTCGAGTCATGAAATGGACGACTCCGCACAATTTATCTCTTCAGTTTGTTGGCGAGGCCAGTCGTCTTCATTAGTAGCTGCAAACTCAACTGGGCATATCAAAATTTTGGAAATGGTTTAG 2604 40.98 MFAYWLMCSFKWITMEASSDHLRNQDDISGVCEEDILADPYVRSHKWSDISLRQWLDKPGRSVDALECLHIFRQIVEIVNIAHAQGIVVHNVRPSCFVMSSFNHVTFIESASCSDSGSDSLEDGLNSQMAEVKTSSSPFPSSLGSEGFRSVMTPINALSETSCMQSSSVYAAQVSLNEGSGKGRKKDRRHIEETEDKMQSFPMKQILAMETTWYTSPEEASDGPSSSASDIYRLGVLLFELFCSFSSREEKSRTMSSLRHRVLPTQLLLKWPKEASFCLWLLHPEPTNRPKLRRLVFYFYSELLQSEFLNETKDDLEEREAAIKLRKRIEEQELLLEFLLLMQQRKQEAAHKLQDTISFLCSDIEQVMRHQTNFKKKTGSRTDFVKDNHLSLNHPSMTLVRNTDSAGLGSRKRFRPGILTHDIEACGDNLDDSEKSSSDNENEQGVLFKSSRLMKNFKKLELAYFLMRGRVNKPSRQFVKHSSISSDGRGSVVLTERSSVNNLASKESCNDNRQGGWISPFLEGLCKYLSFSKLKVKADLKQGDLLNSSNLVCSLSFDRDGEFFATAGVNRKIKVFGYDSIVNEDRDIHYPVVEMASRSKLSSVCWNRYIKSQIASSNFEGVVQVWDVTRSQVVTEMGEHERRVWSIDFSSAEPTILASGSDDGSVKLWSINQAILFLHLVDGISIGTIRTKANVCCVQFPVDSGRSLAFGSADHKIYYYDMRNIRVPLCTFTGHNKTVSYVKYIDSSTLVSASTDNTLKLWDLTMCTSRVVDSPVQSFTGHMNIKNFVGLSVSDGYIATGSETNEVFIYHKAFPMPALSYKFQMDPLSSHEMDDSAQFISSVCWRGQSSSLVAANSTGHIKILEMV 867
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27874013 27883383 - Lsi04G020730.1 Lsi04g02073 662122

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02073 867 ProSiteProfiles Trp-Asp (WD) repeats profile. 637 672 IPR001680 GO:0005515
Lsi04g02073 867 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 637 672 - -
Lsi04g02073 867 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 732 764 - -
Lsi04g02073 867 Gene3D Transferase(Phosphotransferase) domain 1 48 317 - -
Lsi04g02073 867 Gene3D - 523 867 IPR015943 GO:0005515
Lsi04g02073 867 ProSitePatterns Trp-Asp (WD) repeats signature. 750 764 IPR019775 -
Lsi04g02073 867 SUPERFAMILY Protein kinase-like (PK-like) 48 308 IPR011009 -
Lsi04g02073 867 ProSiteProfiles Trp-Asp (WD) repeats profile. 732 764 IPR001680 GO:0005515
Lsi04g02073 867 SUPERFAMILY WD40 repeat-like 546 864 IPR036322 GO:0005515
Lsi04g02073 867 ProSiteProfiles Protein kinase domain profile. 1 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g02073 867 PANTHER PROTEIN SPA1-RELATED 3 15 867 - -
Lsi04g02073 867 Coils Coil 313 333 - -
Lsi04g02073 867 PANTHER PROTEIN SPA1-RELATED 2 15 867 IPR044630 GO:0009640
Lsi04g02073 867 PRINTS G protein beta WD-40 repeat signature 657 671 IPR020472 -
Lsi04g02073 867 PRINTS G protein beta WD-40 repeat signature 614 628 IPR020472 -
Lsi04g02073 867 PRINTS G protein beta WD-40 repeat signature 750 764 IPR020472 -
Lsi04g02073 867 Pfam WD domain, G-beta repeat 635 670 IPR001680 GO:0005515
Lsi04g02073 867 Pfam WD domain, G-beta repeat 728 763 IPR001680 GO:0005515
Lsi04g02073 867 SMART WD40_4 630 670 IPR001680 GO:0005515
Lsi04g02073 867 SMART WD40_4 588 627 IPR001680 GO:0005515
Lsi04g02073 867 SMART WD40_4 725 763 IPR001680 GO:0005515
Lsi04g02073 867 SMART WD40_4 682 721 IPR001680 GO:0005515
Lsi04g02073 867 SMART WD40_4 542 577 IPR001680 GO:0005515
Lsi04g02073 867 SMART WD40_4 772 811 IPR001680 GO:0005515
Lsi04g02073 867 SMART WD40_4 826 865 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02073 - - - csv:101205812 1564.67
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02073 Lsi-Chr4:27874013 Lsi09g00187 Lsi-Chr9:1948413 2.83E-163 dispersed
Lsi04g02073 Lsi-Chr4:27874013 Lsi10g00406 Lsi-Chr10:6160066 6.98E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g217 . . Bda07g00298 . . Bpe08g01023 . . . . . . . Car09g00777 . . . Bhi09g02022 . . . . . . . . . . . . . . . . . Lsi04g02073 . . . . Blo10g00765 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003437 3 3 1 2 3 0 2 1 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 3 2 4 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02073 Lsi_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0