Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02074 ATGGCTTTATTTCGCAAATTCTTTTATCGGAAGCCACCGGACGGGCTTTTAGAGATATCCGAAAGGGTTTATGTTTTCGACTGCTGCTTTACAACGGAGGTTTTGGAAGAAGACGAATACAAGGTCTATATTGGAGGGATTGTTGGTCAACTTCGTGAGAGTCTCACCGACGCTTCATTCATGGTGTTCAATTTCCGAGAAGGGGAGAGTCATAGCCCCATTACCAATATATTATCAGTATATGATATGACTGTCATGGACTATCCTCGACATTATGAAGGCTGTCCTCTACTCACGATGGAGATGATCCACCACTTCTTAAGATCCAGTGAAAGCTGGCTCTCACTTGGGCAACAGAATGTACTTTTGATGCACTGTGAAAGAGGGGGGTGGCCAGTCTTGGCCTTCATGTTGGCCGCTCTTCTGATTTATAGGAAGCAGTATGCCGGGGAGCAGAAAACTTTGGACATGATTTACAAGCAAGCACCGCGGGAACTTTTGCAGTTGATGTCACCTCTTAATCCATTGCCTTCACAGTTGAGGTATCTTCAATATGTATCAAGAAGAAATGTGGGCTCAGAATGGCCTCCGCTTGACAGGGCCCTTACTCTAGACTGCATAATTATTAGATTTATTCCTAATATGGATGGGGAGGGTGGTTGCCGCCCAATATTTAGGATATATGGACAGGATCCCTTTATGGCTGCTGATCGAACTTCCAAAGTATTGTTCTCAACCCCCAAAAAGAGTAAACTTGTTCGTCAGTATAAGCAGGTAGATTGTGAACTAGTTAAAATTGATATCCATTGCCATATCCAAGGTGATGTTGTTCTTGAATGTATAAGTTTGGACAATGATCTGGAAAGGGAGGAGATGATGTTTCGAGTTATGTTTAACACAGCATTTATAAGGTCAAATATTTTGATGCTTAACCGTGATGACATTGATATTTTATGGCACGCAAAGGATCAATTTCCAAAGGATTTCAGAGCAGAGGTTCTTTTCTCAGAGATGGATGCTTCCGCATCACTTGTTTCAATTGAGTTGCCAAGTATTGAGGAGAAAGATGGTCTTCCAATTGAAGCATTTGCTAGAGTTCAAGAGATCTTTAGCAATGTGGACTGGCTAAGCCCAAAGGCAGATGCAGCTCTTAATGTGCTTCAGAAAATAACAGCTTCAAATTTACTTCAAGAGAAACTGGTTAGTTCCGGCTCTTTAGATAGAAACCAGTTGCTTGACTTATCTCTTGAAAAACTAATCTTGGAATCAGAGACATCCGAAGACAATATTGGAAGTCCCCGATTGAAGATACAGGCAAAAAAATCTCATCTTTCTTCCGAACTATCTCAGGCTGCAGGTTCAGAGAGATCACTGATTGATCCCTCAGAATTGCAGGTTGCTCTCCAACTACCACCTCAGTCTAAAATCATCACCCAACGAATACCTCAACCTTCATTGTCTACGCCAGCCTCCTTCCGTAGTTCTGTGCAAGGTTCACCTCGCCCTATATTAAGATATCACAGTGCACCCTCAGCTCTTGGCATTACAGCTTTATTACACGATCATTCCAATTTTAGTGGTAAAGAAGTCATACATCCAGGGACAATATCTTCACCATCATCCGCTTTGTTGAGTTCAAGTGCTCTAGATTCACTTAAAGACATTCAACCTGGTAAGCTTCCTATTTTGCCTCTCCCGCTAGCATTAGAGCCAAGATCTACATCAGAAAATTCTTCGACCACCGTGTCAACTTCAACCAGTCCTGATCCATTGTCACTTCACCAACTTTCTTTGAGACCTATTAAATCTTCAGTTTCTCAACTGCCTCAAGACACATCACAGGTGAGAAGTCAATTATCACCGTCGTCATTACAACCAACTCCTACCTCTTTTCCTGAGGAGTCCCCACACTCTTTCAATGAGAGCACAGCTTCAAGAACCTCTTCCTCTCATTTGTTAAGATCATCTCCATCTTCTTGTACTAAGGAATCATTTTCCGTTTCCACCCCTCCCTCTTCTCCTCCTCCTCCTCCTCCCCTTCCCCATCTTGATTCACCTTTGGCTTTAGTAACATCTCCATCTTCTAGTAGGGCAAATGGTTCAATTTTCCCATCCTCACCACAAGCTCCTTCTACAACAATACTGTTATCCTCTACAAAGACATCAATTCCATCTGTTCCTCAATTTTCTTCGTCTGATGATCGTCTAGTTTCTACTCACCCTAACTTGGGCGCTAGTGTTGTCTCGCCAACATCAGTGCCCCCACCCCCACCTCCACCTCCTACATGGAAGGACTCTATAAACACAATCATGCATGATCCCCCACCTCCACCTCCACCTCCAGCCCCACCATTGCCTCCATCTTCTTTCAGTTCAACATCTACTTGTGATTCTAGTATCACGCCTTTAGGGCCACCGCCGCCGCCACCACCTCCTAGTCTTGCACCACAAGATTTTGCCACAGTAGTTAGGAACTTGATGGCTGTATCTGGCCCTCCACCTCCCCCACCTCCCCCGTCTCATTCGTCTCTAGATCCTATAACTGTATCTTCAGTGCCACCCCCGCCACCCCCTCCTAGTCTTGCACCAAATGTTTCTACAACAACCGTTAACTTGATGCATGTCTCTGGCCCCCCTCCTCCTCCTCCACCACCTTTTGCAAATTCTGGACCCACCTTATGTCCAGATGCTGTAACGTCAGCTCCTCCTGCTCCACCTCCTCCAGGTTTCTCAATGAAGGATTCTGCAACAAATGCTCCACCTGCACCCCCTCCTCCAGGTCTCAGCGGTAATAAACTCTCAAATGTCAATGGTACTTCCTCACAGTCTCAAGTGGGCATTAATAACAGCAACATACCTTCTGTTCCTGGACCACCTTCCAGCGCTCTATTCAATGCAAAGGGACGAGGCCTTGGACGTTTGAACTCCAAAAACCAGTCTCAACCTAAAAGGTCCAACTTGAAGCCATATCATTGGTTAAAATTAACGAGGGCCATGCAAGGAAGCTTATGGGCAGAGACACAAAAGACTGATGAAGCTTCCAAAGCTCCGGAGTTTGACATGTCCGAACTTGAAAGTCTTTTCTCTGCAGCTGCACCAAATTCGGACTCCGGAGGTTCGGGTGGAAATTCAAATCGCCGAGCCTCAGGGCCAAAATCAGATAAAGTTCATTTGATTGAACTTCGACGGGCCTATAATTGTGAAATTATGCTTTCCAAAGTTAAGATTCCTTTGCCTGATATGATGTGTTCAGTCCTTGCATTGGATGATTCGGCATTAGATGTGGATCAGGTTGAGAACCTAATCAAGTTTTGCCCAACAAAGGAAGAAATGGAATTACTTAAGGGGTACAGTGGGGATAAGGACAACTTGGGAAAATGTGAACAATTCTTTTTAGAGTTGATGAAAGTCCCACGAGTAGAGTCCAAGCTAAGGGTCTTTTCTTTCAAGATACAATTCCGATTGCAGGCCTCTGACCTTAGAAATAATCTGAATACTATCAATTCGGCATCTGAAGAGGCAATTTTGGAACTTCTGAATGGTATCACCAAGACTTCAAGTGTGCTACGAGTTCTCGTTATTGTTCATGTAGGTTCTGCTATTGGATTTCGGCTTGATAGTCTCCTCAAACTCACTGATACACGAGCCAGAAACAATAAGATGACTCTCATGCATTATCTATGTAAGGTGCTTGCTGAAAAGCTGCCAGAACTTCTAGATTTTCCGAAGGATCTTGTGAGTTTGGAAGCTTCTACGAAGATACAACTGAAATACTTGGCAGAGGAAATGCAAGCCATAAGCAAAGGGCTTGAGAAGGTTGTTCAGGAATTGGCTAATTCAGAGAACGATGGGCTCGTTTCGGAAACTTTTTGTCGGACTTTAAAAGACTTCCTTTCTCATGCCGAGGCTGAAGTGAGGTCTCTTGCTTCTCTCTATTCAAATGTGGGTAGAAATGCTGATGCATTGGCTCTTTATTTCGGCGAAGATCCAGCACGTTGCCCTTTTGAACAAGTTGTTTCGACACTGTTCAATTTCGTGAAGATGTTTGTGCGAGCGCATGTAGAAAACTGTAAGCAACTTGATTACGAAAAGAAGAAAGCACAGAAGGAAGCTGCAGAAAAGGAGAAGTTGAAAGTCAATACCCCAAAAAAGGAGTCAGGATTCTTGATGCAGACTCCAACCTAG 4185 43.99 MALFRKFFYRKPPDGLLEISERVYVFDCCFTTEVLEEDEYKVYIGGIVGQLRESLTDASFMVFNFREGESHSPITNILSVYDMTVMDYPRHYEGCPLLTMEMIHHFLRSSESWLSLGQQNVLLMHCERGGWPVLAFMLAALLIYRKQYAGEQKTLDMIYKQAPRELLQLMSPLNPLPSQLRYLQYVSRRNVGSEWPPLDRALTLDCIIIRFIPNMDGEGGCRPIFRIYGQDPFMAADRTSKVLFSTPKKSKLVRQYKQVDCELVKIDIHCHIQGDVVLECISLDNDLEREEMMFRVMFNTAFIRSNILMLNRDDIDILWHAKDQFPKDFRAEVLFSEMDASASLVSIELPSIEEKDGLPIEAFARVQEIFSNVDWLSPKADAALNVLQKITASNLLQEKLVSSGSLDRNQLLDLSLEKLILESETSEDNIGSPRLKIQAKKSHLSSELSQAAGSERSLIDPSELQVALQLPPQSKIITQRIPQPSLSTPASFRSSVQGSPRPILRYHSAPSALGITALLHDHSNFSGKEVIHPGTISSPSSALLSSSALDSLKDIQPGKLPILPLPLALEPRSTSENSSTTVSTSTSPDPLSLHQLSLRPIKSSVSQLPQDTSQVRSQLSPSSLQPTPTSFPEESPHSFNESTASRTSSSHLLRSSPSSCTKESFSVSTPPSSPPPPPPLPHLDSPLALVTSPSSSRANGSIFPSSPQAPSTTILLSSTKTSIPSVPQFSSSDDRLVSTHPNLGASVVSPTSVPPPPPPPPTWKDSINTIMHDPPPPPPPPAPPLPPSSFSSTSTCDSSITPLGPPPPPPPPSLAPQDFATVVRNLMAVSGPPPPPPPPSHSSLDPITVSSVPPPPPPPSLAPNVSTTTVNLMHVSGPPPPPPPPFANSGPTLCPDAVTSAPPAPPPPGFSMKDSATNAPPAPPPPGLSGNKLSNVNGTSSQSQVGINNSNIPSVPGPPSSALFNAKGRGLGRLNSKNQSQPKRSNLKPYHWLKLTRAMQGSLWAETQKTDEASKAPEFDMSELESLFSAAAPNSDSGGSGGNSNRRASGPKSDKVHLIELRRAYNCEIMLSKVKIPLPDMMCSVLALDDSALDVDQVENLIKFCPTKEEMELLKGYSGDKDNLGKCEQFFLELMKVPRVESKLRVFSFKIQFRLQASDLRNNLNTINSASEEAILELLNGITKTSSVLRVLVIVHVGSAIGFRLDSLLKLTDTRARNNKMTLMHYLCKVLAEKLPELLDFPKDLVSLEASTKIQLKYLAEEMQAISKGLEKVVQELANSENDGLVSETFCRTLKDFLSHAEAEVRSLASLYSNVGRNADALALYFGEDPARCPFEQVVSTLFNFVKMFVRAHVENCKQLDYEKKKAQKEAAEKEKLKVNTPKKESGFLMQTPT 1394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27894458 27905813 + Lsi04G020740.1 Lsi04g02074 662123

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02074 1394 MobiDBLite consensus disorder prediction 1031 1053 - -
Lsi04g02074 1394 Gene3D Formin, FH2 domain 971 1360 IPR042201 -
Lsi04g02074 1394 MobiDBLite consensus disorder prediction 688 749 - -
Lsi04g02074 1394 Pfam C2 domain of PTEN tumour-suppressor protein 200 337 IPR014020 -
Lsi04g02074 1394 Gene3D - 196 341 - -
Lsi04g02074 1394 MobiDBLite consensus disorder prediction 801 816 - -
Lsi04g02074 1394 SUPERFAMILY Formin homology 2 domain (FH2 domain) 903 1369 - -
Lsi04g02074 1394 ProSiteProfiles Formin homology-2 (FH2) domain profile. 977 1375 IPR015425 -
Lsi04g02074 1394 PANTHER FORMIN-J 1 1386 - -
Lsi04g02074 1394 MobiDBLite consensus disorder prediction 1370 1394 - -
Lsi04g02074 1394 MobiDBLite consensus disorder prediction 972 986 - -
Lsi04g02074 1394 MobiDBLite consensus disorder prediction 1031 1049 - -
Lsi04g02074 1394 Pfam Formin Homology 2 Domain 979 1349 IPR015425 -
Lsi04g02074 1394 MobiDBLite consensus disorder prediction 750 764 - -
Lsi04g02074 1394 MobiDBLite consensus disorder prediction 875 890 - -
Lsi04g02074 1394 ProSiteProfiles C2 tensin-type domain profile. 199 338 IPR014020 -
Lsi04g02074 1394 MobiDBLite consensus disorder prediction 829 863 - -
Lsi04g02074 1394 MobiDBLite consensus disorder prediction 669 684 - -
Lsi04g02074 1394 MobiDBLite consensus disorder prediction 571 668 - -
Lsi04g02074 1394 MobiDBLite consensus disorder prediction 930 958 - -
Lsi04g02074 1394 MobiDBLite consensus disorder prediction 571 992 - -
Lsi04g02074 1394 Gene3D Protein tyrosine phosphatase superfamily 14 191 IPR029021 -
Lsi04g02074 1394 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 338 IPR035892 -
Lsi04g02074 1394 SMART it6_source 670 1394 IPR015425 -
Lsi04g02074 1394 Coils Coil 1350 1377 - -
Lsi04g02074 1394 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 12 187 IPR029021 -
Lsi04g02074 1394 SMART PTEN_C2_2 197 337 IPR014020 -
Lsi04g02074 1394 MobiDBLite consensus disorder prediction 771 788 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02074 - - - csv:101214019 2066.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02074 Lsi-Chr4:27894458 Lsi06g01160 Lsi-Chr6:21828406 1.96E-159 dispersed
Lsi04g02074 Lsi-Chr4:27894458 Lsi02g00091 Lsi-Chr2:754442 2.26E-138 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g572 . Blo12g01054 . Bda03g00096 . . . . . . Cma01g01662 . Car09g00362 . . . Cpe06g00297 . . . . . . . Cla05g01683 Cam05g1798 Cec05g1807 Cco05g1867 Clacu05g1785 Cmu05g1671 Cre05g1800 . . Cone17ag0984 Cone20ag0324 Lsi04g02074 . . . . . . . Bpe14g00599 . . Bma02g00008 Sed05g1743 Cmo01g01711 Cmo09g00417 Cma09g00412 . Car01g01277 . . Cpe02g00327 Bhi09g03005 Tan01g3567 Cmetu07g0822 . Hepe01g1968 Mch11g0505 . . . . . . . . . . . Cme07g00118
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi11g00020 . 462 942 FH2 protein (formin) Gene Family AT3G25500 66.5 3.9e-165 579.3
Lsi10g00514 . 431 887 FH2 protein (formin) Gene Family AT3G25500 60.3 2.7e-142 503.4
Lsi06g00120 . 490 887 FH2 protein (formin) Gene Family AT3G25500 51.5 1.9e-103 374.4
Lsi05g01149 . 644 1067 FH2 protein (formin) Gene Family AT2G43800 63.4 1.2e-141 501.1
Lsi10g00514 . 465 903 FH2 protein (formin) Gene Family AT2G43800 55.1 2.3e-126 450.3
Lsi10g00161 . 285 593 FH2 protein (formin) Gene Family AT4G15200 54.4 7.6e-52 201.8
Lsi04g01249 . 447 593 FH2 protein (formin) Gene Family AT4G15200 66.7 4.3e-47 186.0
Lsi04g01249 . 7 885 FH2 protein (formin) Gene Family AT5G54650 51.5 1.3e-172 604.0
Lsi10g00161 . 447 915 FH2 protein (formin) Gene Family AT5G54650 61.1 3.5e-154 542.7
Lsi05g01149 . 655 1056 FH2 protein (formin) Gene Family AT5G54650 50.8 2.8e-103 373.6
Lsi10g00514 . 31 906 FH2 protein (formin) Gene Family AT5G67470 57.6 6.2e-236 814.3
Lsi05g01149 . 636 1088 FH2 protein (formin) Gene Family AT5G67470 59.5 1.2e-135 481.1
Lsi11g00020 . 503 938 FH2 protein (formin) Gene Family AT5G67470 60.8 1.3e-129 461.1
Lsi06g00120 . 490 889 FH2 protein (formin) Gene Family AT5G67470 50.6 7.4e-104 375.6
Lsi04g00506 . 354 834 FH2 protein (formin) Gene Family AT1G59910 52.2 1.6e-125 447.6
Lsi05g01149 . 676 1057 FH2 protein (formin) Gene Family AT5G48360 52.9 3.0e-101 366.7
Lsi10g00514 . 489 864 FH2 protein (formin) Gene Family AT5G48360 50.5 9.0e-90 328.6
Lsi10g00514 . 469 863 FH2 protein (formin) Gene Family AT3G05470 52.3 2.4e-107 387.1
Lsi04g01249 . 453 868 FH2 protein (formin) Gene Family AT3G05470 50.2 1.2e-106 384.8
Lsi06g01445 CCT 21 368 FH2 protein (formin) Gene Family AT1G31810 63.2 3.7e-114 410.2
Lsi06g01444 . 1 322 FH2 protein (formin) Gene Family AT1G31810 53.5 2.8e-106 384.0
Lsi06g01445 CCT 20 374 FH2 protein (formin) Gene Family AT5G07650 68.2 5.1e-125 445.7
Lsi02g00091 CCT 995 1284 FH2 protein (formin) Gene Family AT5G07650 69.7 6.7e-109 392.1
Lsi04g02074 . 1059 1378 FH2 protein (formin) Gene Family AT5G07650 60.3 5.3e-98 355.9
Lsi06g01160 . 906 1209 FH2 protein (formin) Gene Family AT5G07650 57.8 7.2e-95 345.5
Lsi06g01445 CCT 21 367 FH2 protein (formin) Gene Family AT5G07770 65.1 1.2e-115 414.1
Lsi02g00091 CCT 909 1284 FH2 protein (formin) Gene Family AT5G07770 61.3 1.6e-115 413.7
Lsi04g02074 . 983 1370 FH2 protein (formin) Gene Family AT5G07770 54.2 1.1e-105 380.9
Lsi06g01160 . 829 1201 FH2 protein (formin) Gene Family AT5G07770 53.7 1.2e-102 370.9
Lsi04g02074 . 975 1378 FH2 protein (formin) Gene Family AT3G32400 69.9 3.6e-153 538.5
Lsi06g01160 . 836 1210 FH2 protein (formin) Gene Family AT3G32400 65.8 2.0e-135 479.6
Lsi02g00091 CCT 879 1284 FH2 protein (formin) Gene Family AT3G32400 56.3 1.9e-117 419.9
Lsi06g01445 CCT 21 374 FH2 protein (formin) Gene Family AT3G32400 63.0 4.2e-117 418.7
Lsi06g01160 . 3 1210 FH2 protein (formin) Gene Family AT2G25050 50.6 8.8e-267 917.1
Lsi06g01445 CCT 21 374 FH2 protein (formin) Gene Family AT2G25050 66.4 1.0e-121 435.3
Lsi06g01444 . 1 316 FH2 protein (formin) Gene Family AT2G25050 61.7 1.1e-112 405.2
Lsi06g01445 CCT 21 374 FH2 protein (formin) Gene Family AT5G07780 62.0 7.7e-105 377.9
Lsi02g00091 CCT 910 1284 FH2 protein (formin) Gene Family AT5G07780 55.8 1.0e-101 367.5
Lsi06g01160 . 836 1209 FH2 protein (formin) Gene Family AT5G07780 50.2 4.5e-89 325.5
Lsi06g01444 . 1 590 FH2 protein (formin) Gene Family AT5G07740 57.6 2.5e-166 583.9
Lsi06g01445 CCT 21 383 FH2 protein (formin) Gene Family AT5G07740 75.5 2.9e-143 507.3
Lsi06g01445 CCT 14 381 FH2 protein (formin) Gene Family AT5G07760 67.0 6.8e-123 438.7
Lsi02g00091 CCT 994 1284 FH2 protein (formin) Gene Family AT5G07760 69.4 1.8e-107 387.5
Lsi04g02074 . 1058 1387 FH2 protein (formin) Gene Family AT5G07760 58.4 3.8e-97 353.2
Lsi06g01160 . 905 1209 FH2 protein (formin) Gene Family AT5G07760 60.2 2.5e-96 350.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004653 1 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 2 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02074 Lsi_Chr04 FPKM 13.092778 14.881126 14.747986 17.49877 20.600971 20.30364 19.676411 31.716688 30.761366 33.245686