Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02074 ATGGCTTTATTTCGCAAATTCTTTTATCGGAAGCCACCGGACGGGCTTTTAGAGATATCCGAAAGGGTTTATGTTTTCGACTGCTGCTTTACAACGGAGGTTTTGGAAGAAGACGAATACAAGGTCTATATTGGAGGGATTGTTGGTCAACTTCGTGAGAGTCTCACCGACGCTTCATTCATGGTGTTCAATTTCCGAGAAGGGGAGAGTCATAGCCCCATTACCAATATATTATCAGTATATGATATGACTGTCATGGACTATCCTCGACATTATGAAGGCTGTCCTCTACTCACGATGGAGATGATCCACCACTTCTTAAGATCCAGTGAAAGCTGGCTCTCACTTGGGCAACAGAATGTACTTTTGATGCACTGTGAAAGAGGGGGGTGGCCAGTCTTGGCCTTCATGTTGGCCGCTCTTCTGATTTATAGGAAGCAGTATGCCGGGGAGCAGAAAACTTTGGACATGATTTACAAGCAAGCACCGCGGGAACTTTTGCAGTTGATGTCACCTCTTAATCCATTGCCTTCACAGTTGAGGTATCTTCAATATGTATCAAGAAGAAATGTGGGCTCAGAATGGCCTCCGCTTGACAGGGCCCTTACTCTAGACTGCATAATTATTAGATTTATTCCTAATATGGATGGGGAGGGTGGTTGCCGCCCAATATTTAGGATATATGGACAGGATCCCTTTATGGCTGCTGATCGAACTTCCAAAGTATTGTTCTCAACCCCCAAAAAGAGTAAACTTGTTCGTCAGTATAAGCAGGTAGATTGTGAACTAGTTAAAATTGATATCCATTGCCATATCCAAGGTGATGTTGTTCTTGAATGTATAAGTTTGGACAATGATCTGGAAAGGGAGGAGATGATGTTTCGAGTTATGTTTAACACAGCATTTATAAGGTCAAATATTTTGATGCTTAACCGTGATGACATTGATATTTTATGGCACGCAAAGGATCAATTTCCAAAGGATTTCAGAGCAGAGGTTCTTTTCTCAGAGATGGATGCTTCCGCATCACTTGTTTCAATTGAGTTGCCAAGTATTGAGGAGAAAGATGGTCTTCCAATTGAAGCATTTGCTAGAGTTCAAGAGATCTTTAGCAATGTGGACTGGCTAAGCCCAAAGGCAGATGCAGCTCTTAATGTGCTTCAGAAAATAACAGCTTCAAATTTACTTCAAGAGAAACTGGTTAGTTCCGGCTCTTTAGATAGAAACCAGTTGCTTGACTTATCTCTTGAAAAACTAATCTTGGAATCAGAGACATCCGAAGACAATATTGGAAGTCCCCGATTGAAGATACAGGCAAAAAAATCTCATCTTTCTTCCGAACTATCTCAGGCTGCAGGTTCAGAGAGATCACTGATTGATCCCTCAGAATTGCAGGTTGCTCTCCAACTACCACCTCAGTCTAAAATCATCACCCAACGAATACCTCAACCTTCATTGTCTACGCCAGCCTCCTTCCGTAGTTCTGTGCAAGGTTCACCTCGCCCTATATTAAGATATCACAGTGCACCCTCAGCTCTTGGCATTACAGCTTTATTACACGATCATTCCAATTTTAGTGGTAAAGAAGTCATACATCCAGGGACAATATCTTCACCATCATCCGCTTTGTTGAGTTCAAGTGCTCTAGATTCACTTAAAGACATTCAACCTGGTAAGCTTCCTATTTTGCCTCTCCCGCTAGCATTAGAGCCAAGATCTACATCAGAAAATTCTTCGACCACCGTGTCAACTTCAACCAGTCCTGATCCATTGTCACTTCACCAACTTTCTTTGAGACCTATTAAATCTTCAGTTTCTCAACTGCCTCAAGACACATCACAGGTGAGAAGTCAATTATCACCGTCGTCATTACAACCAACTCCTACCTCTTTTCCTGAGGAGTCCCCACACTCTTTCAATGAGAGCACAGCTTCAAGAACCTCTTCCTCTCATTTGTTAAGATCATCTCCATCTTCTTGTACTAAGGAATCATTTTCCGTTTCCACCCCTCCCTCTTCTCCTCCTCCTCCTCCTCCCCTTCCCCATCTTGATTCACCTTTGGCTTTAGTAACATCTCCATCTTCTAGTAGGGCAAATGGTTCAATTTTCCCATCCTCACCACAAGCTCCTTCTACAACAATACTGTTATCCTCTACAAAGACATCAATTCCATCTGTTCCTCAATTTTCTTCGTCTGATGATCGTCTAGTTTCTACTCACCCTAACTTGGGCGCTAGTGTTGTCTCGCCAACATCAGTGCCCCCACCCCCACCTCCACCTCCTACATGGAAGGACTCTATAAACACAATCATGCATGATCCCCCACCTCCACCTCCACCTCCAGCCCCACCATTGCCTCCATCTTCTTTCAGTTCAACATCTACTTGTGATTCTAGTATCACGCCTTTAGGGCCACCGCCGCCGCCACCACCTCCTAGTCTTGCACCACAAGATTTTGCCACAGTAGTTAGGAACTTGATGGCTGTATCTGGCCCTCCACCTCCCCCACCTCCCCCGTCTCATTCGTCTCTAGATCCTATAACTGTATCTTCAGTGCCACCCCCGCCACCCCCTCCTAGTCTTGCACCAAATGTTTCTACAACAACCGTTAACTTGATGCATGTCTCTGGCCCCCCTCCTCCTCCTCCACCACCTTTTGCAAATTCTGGACCCACCTTATGTCCAGATGCTGTAACGTCAGCTCCTCCTGCTCCACCTCCTCCAGGTTTCTCAATGAAGGATTCTGCAACAAATGCTCCACCTGCACCCCCTCCTCCAGGTCTCAGCGGTAATAAACTCTCAAATGTCAATGGTACTTCCTCACAGTCTCAAGTGGGCATTAATAACAGCAACATACCTTCTGTTCCTGGACCACCTTCCAGCGCTCTATTCAATGCAAAGGGACGAGGCCTTGGACGTTTGAACTCCAAAAACCAGTCTCAACCTAAAAGGTCCAACTTGAAGCCATATCATTGGTTAAAATTAACGAGGGCCATGCAAGGAAGCTTATGGGCAGAGACACAAAAGACTGATGAAGCTTCCAAAGCTCCGGAGTTTGACATGTCCGAACTTGAAAGTCTTTTCTCTGCAGCTGCACCAAATTCGGACTCCGGAGGTTCGGGTGGAAATTCAAATCGCCGAGCCTCAGGGCCAAAATCAGATAAAGTTCATTTGATTGAACTTCGACGGGCCTATAATTGTGAAATTATGCTTTCCAAAGTTAAGATTCCTTTGCCTGATATGATGTGTTCAGTCCTTGCATTGGATGATTCGGCATTAGATGTGGATCAGGTTGAGAACCTAATCAAGTTTTGCCCAACAAAGGAAGAAATGGAATTACTTAAGGGGTACAGTGGGGATAAGGACAACTTGGGAAAATGTGAACAATTCTTTTTAGAGTTGATGAAAGTCCCACGAGTAGAGTCCAAGCTAAGGGTCTTTTCTTTCAAGATACAATTCCGATTGCAGGCCTCTGACCTTAGAAATAATCTGAATACTATCAATTCGGCATCTGAAGAGGCAATTTTGGAACTTCTGAATGGTATCACCAAGACTTCAAGTGTGCTACGAGTTCTCGTTATTGTTCATGTAGGTTCTGCTATTGGATTTCGGCTTGATAGTCTCCTCAAACTCACTGATACACGAGCCAGAAACAATAAGATGACTCTCATGCATTATCTATGTAAGGTGCTTGCTGAAAAGCTGCCAGAACTTCTAGATTTTCCGAAGGATCTTGTGAGTTTGGAAGCTTCTACGAAGATACAACTGAAATACTTGGCAGAGGAAATGCAAGCCATAAGCAAAGGGCTTGAGAAGGTTGTTCAGGAATTGGCTAATTCAGAGAACGATGGGCTCGTTTCGGAAACTTTTTGTCGGACTTTAAAAGACTTCCTTTCTCATGCCGAGGCTGAAGTGAGGTCTCTTGCTTCTCTCTATTCAAATGTGGGTAGAAATGCTGATGCATTGGCTCTTTATTTCGGCGAAGATCCAGCACGTTGCCCTTTTGAACAAGTTGTTTCGACACTGTTCAATTTCGTGAAGATGTTTGTGCGAGCGCATGTAGAAAACTGTAAGCAACTTGATTACGAAAAGAAGAAAGCACAGAAGGAAGCTGCAGAAAAGGAGAAGTTGAAAGTCAATACCCCAAAAAAGGAGTCAGGATTCTTGATGCAGACTCCAACCTAG 4185 43.99 MALFRKFFYRKPPDGLLEISERVYVFDCCFTTEVLEEDEYKVYIGGIVGQLRESLTDASFMVFNFREGESHSPITNILSVYDMTVMDYPRHYEGCPLLTMEMIHHFLRSSESWLSLGQQNVLLMHCERGGWPVLAFMLAALLIYRKQYAGEQKTLDMIYKQAPRELLQLMSPLNPLPSQLRYLQYVSRRNVGSEWPPLDRALTLDCIIIRFIPNMDGEGGCRPIFRIYGQDPFMAADRTSKVLFSTPKKSKLVRQYKQVDCELVKIDIHCHIQGDVVLECISLDNDLEREEMMFRVMFNTAFIRSNILMLNRDDIDILWHAKDQFPKDFRAEVLFSEMDASASLVSIELPSIEEKDGLPIEAFARVQEIFSNVDWLSPKADAALNVLQKITASNLLQEKLVSSGSLDRNQLLDLSLEKLILESETSEDNIGSPRLKIQAKKSHLSSELSQAAGSERSLIDPSELQVALQLPPQSKIITQRIPQPSLSTPASFRSSVQGSPRPILRYHSAPSALGITALLHDHSNFSGKEVIHPGTISSPSSALLSSSALDSLKDIQPGKLPILPLPLALEPRSTSENSSTTVSTSTSPDPLSLHQLSLRPIKSSVSQLPQDTSQVRSQLSPSSLQPTPTSFPEESPHSFNESTASRTSSSHLLRSSPSSCTKESFSVSTPPSSPPPPPPLPHLDSPLALVTSPSSSRANGSIFPSSPQAPSTTILLSSTKTSIPSVPQFSSSDDRLVSTHPNLGASVVSPTSVPPPPPPPPTWKDSINTIMHDPPPPPPPPAPPLPPSSFSSTSTCDSSITPLGPPPPPPPPSLAPQDFATVVRNLMAVSGPPPPPPPPSHSSLDPITVSSVPPPPPPPSLAPNVSTTTVNLMHVSGPPPPPPPPFANSGPTLCPDAVTSAPPAPPPPGFSMKDSATNAPPAPPPPGLSGNKLSNVNGTSSQSQVGINNSNIPSVPGPPSSALFNAKGRGLGRLNSKNQSQPKRSNLKPYHWLKLTRAMQGSLWAETQKTDEASKAPEFDMSELESLFSAAAPNSDSGGSGGNSNRRASGPKSDKVHLIELRRAYNCEIMLSKVKIPLPDMMCSVLALDDSALDVDQVENLIKFCPTKEEMELLKGYSGDKDNLGKCEQFFLELMKVPRVESKLRVFSFKIQFRLQASDLRNNLNTINSASEEAILELLNGITKTSSVLRVLVIVHVGSAIGFRLDSLLKLTDTRARNNKMTLMHYLCKVLAEKLPELLDFPKDLVSLEASTKIQLKYLAEEMQAISKGLEKVVQELANSENDGLVSETFCRTLKDFLSHAEAEVRSLASLYSNVGRNADALALYFGEDPARCPFEQVVSTLFNFVKMFVRAHVENCKQLDYEKKKAQKEAAEKEKLKVNTPKKESGFLMQTPT 1394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27894458 27905813 + Lsi04G020740.1 Lsi04g02074 662123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02074 1394 MobiDBLite consensus disorder prediction 1031 1053 - -
Lsi04g02074 1394 Gene3D Formin, FH2 domain 971 1360 IPR042201 -
Lsi04g02074 1394 MobiDBLite consensus disorder prediction 688 749 - -
Lsi04g02074 1394 Pfam C2 domain of PTEN tumour-suppressor protein 200 337 IPR014020 -
Lsi04g02074 1394 Gene3D - 196 341 - -
Lsi04g02074 1394 MobiDBLite consensus disorder prediction 801 816 - -
Lsi04g02074 1394 SUPERFAMILY Formin homology 2 domain (FH2 domain) 903 1369 - -
Lsi04g02074 1394 ProSiteProfiles Formin homology-2 (FH2) domain profile. 977 1375 IPR015425 -
Lsi04g02074 1394 PANTHER FORMIN-J 1 1386 - -
Lsi04g02074 1394 MobiDBLite consensus disorder prediction 1370 1394 - -
Lsi04g02074 1394 MobiDBLite consensus disorder prediction 972 986 - -
Lsi04g02074 1394 MobiDBLite consensus disorder prediction 1031 1049 - -
Lsi04g02074 1394 Pfam Formin Homology 2 Domain 979 1349 IPR015425 -
Lsi04g02074 1394 MobiDBLite consensus disorder prediction 750 764 - -
Lsi04g02074 1394 MobiDBLite consensus disorder prediction 875 890 - -
Lsi04g02074 1394 ProSiteProfiles C2 tensin-type domain profile. 199 338 IPR014020 -
Lsi04g02074 1394 MobiDBLite consensus disorder prediction 829 863 - -
Lsi04g02074 1394 MobiDBLite consensus disorder prediction 669 684 - -
Lsi04g02074 1394 MobiDBLite consensus disorder prediction 571 668 - -
Lsi04g02074 1394 MobiDBLite consensus disorder prediction 930 958 - -
Lsi04g02074 1394 MobiDBLite consensus disorder prediction 571 992 - -
Lsi04g02074 1394 Gene3D Protein tyrosine phosphatase superfamily 14 191 IPR029021 -
Lsi04g02074 1394 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 338 IPR035892 -
Lsi04g02074 1394 SMART it6_source 670 1394 IPR015425 -
Lsi04g02074 1394 Coils Coil 1350 1377 - -
Lsi04g02074 1394 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 12 187 IPR029021 -
Lsi04g02074 1394 SMART PTEN_C2_2 197 337 IPR014020 -
Lsi04g02074 1394 MobiDBLite consensus disorder prediction 771 788 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02074 Lsi-Chr4:27894458 Lsi06g01160 Lsi-Chr6:21828406 1.96E-159 dispersed
Lsi04g02074 Lsi-Chr4:27894458 Lsi02g00091 Lsi-Chr2:754442 2.26E-138 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02074 - - csv:101214019 2066.58