Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02076 ATGGAGGAGAGGCATGTTCTGTTTGGTAAATATGAGATTGGGAGGTTGTTAGGGAAAGGGACTTTTGCTAAGGTTTATTATGGAAAAGAATTGGAATCTGGTGAAAGTGTAGCGATTAAGGTTTTAAATAAGGATCAGGTCAAGAAGGAAGGGATGATGGAGCAGATCAAGCGCGAGATCTCCGTTATGCGTCTTGTTCGTCATCCCAACATTGTTGAGTTGAAGGAGGTAATGGCGACGAAGACGAAGATCTTCTTCGTTATGGATTATGTTCGCGGTGGTGAGCTTTTTGCTAAAGTCGCTAGAGGAAAACTCAAGGAAGATGTGGCTCGGAAGTATTTTCAGCAGTTGATCAGCGCAGTCGATTACTGTCACAGCCGTGGAGTCTCTCACCGCGATTTGAAGCCGGAGAATCTTTTGCTGGACGAGAACGAAGATCTCAAGATCTCCGACTTTGGACTCTCCGCTTTACCGGAACAGCTTCGGAACGACGGTCTTCTCCACACGCAGTGCGGTACTCCGGCTTATGTCGCCCCGGAAGTACTAAGAAGGAAGGGGTACGATGGGGCGAAAGCCGATATCTGGTCTTGCGGTGTGATTTTGTATGTTTTGTTAGCAGGATTCCTTCCATTTCAGGATGAGAACATCATGACTATGTATAAGAAGGTTTTCAAGGCAGAATTCGAATGTCCGCCATGGTTCTCCGCCGAATCGAAGCGTTTGATTTCAAAAATCCTCGTCGTAGATCCAGGAAGACGAATCACAATCGGAGCAATGACGCGAGTTCCTTGGTTCCGAAAAGATTTCTCGAGATCGCTCTCGTTCACGATGAAAGAAATAATCGCAGCGAAAACAGAGGATTCCGATTCCGAGAGTCCAAAACTATCGACGCCAAAATTCTTCAATGCGTTCGAATTAATATCGTCGATGTCGTCCGGATTCGATCTGTCGAGTTTATTCGAGAACGAAAGGAAGACAGGATCCATGTTCACATCGAGATGCTCAGTGTCGACGATCATGGAGAAGATCGAGACGGTGGCGAAGAAATTGTGCTTCAAGGTATCGGAAGTAAAAGATTTCAAGGTCCGGCTGCAAGGTCCGGCGGAGGGGCGAAAAGGAAAGCTGTCTGTGACTGCGGAGGTATTCGAAATAGCGCCGGAAGTTGCGATAGTGGAATTTTCAAAGTCGTCCGGCGATACTCTGGAATATTCGAAGTTCTGTGAAGAAGGCGTTCGCCCGGCACTGAAAGACATCGTTTGGACGTGGCAAGGTGATTGTGTCCCTAACGCTGACGGACGTCACGGCCAATTTGACGGCGACGAATTTTTATGA 1332 47.3 MEERHVLFGKYEIGRLLGKGTFAKVYYGKELESGESVAIKVLNKDQVKKEGMMEQIKREISVMRLVRHPNIVELKEVMATKTKIFFVMDYVRGGELFAKVARGKLKEDVARKYFQQLISAVDYCHSRGVSHRDLKPENLLLDENEDLKISDFGLSALPEQLRNDGLLHTQCGTPAYVAPEVLRRKGYDGAKADIWSCGVILYVLLAGFLPFQDENIMTMYKKVFKAEFECPPWFSAESKRLISKILVVDPGRRITIGAMTRVPWFRKDFSRSLSFTMKEIIAAKTEDSDSESPKLSTPKFFNAFELISSMSSGFDLSSLFENERKTGSMFTSRCSVSTIMEKIETVAKKLCFKVSEVKDFKVRLQGPAEGRKGKLSVTAEVFEIAPEVAIVEFSKSSGDTLEYSKFCEEGVRPALKDIVWTWQGDCVPNADGRHGQFDGDEFL 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27926843 27928174 - Lsi04G020760.1 Lsi04g02076 662125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02076 443 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Lsi04g02076 443 Pfam NAF domain 298 354 IPR004041 GO:0007165
Lsi04g02076 443 SMART serkin_6 11 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g02076 443 ProSitePatterns Protein kinases ATP-binding region signature. 17 40 IPR017441 GO:0005524
Lsi04g02076 443 Pfam Protein kinase domain 11 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g02076 443 ProSiteProfiles NAF domain profile. 296 321 IPR018451 GO:0007165
Lsi04g02076 443 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 25-RELATED 1 432 - -
Lsi04g02076 443 Gene3D Phosphorylase Kinase; domain 1 1 90 - -
Lsi04g02076 443 PANTHER - 1 432 - -
Lsi04g02076 443 CDD CIPK_C 302 416 - -
Lsi04g02076 443 CDD STKc_SnRK3 10 264 - -
Lsi04g02076 443 Gene3D Kinase associated domain 1, KA1 296 421 - -
Lsi04g02076 443 ProSiteProfiles Protein kinase domain profile. 11 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g02076 443 SUPERFAMILY Protein kinase-like (PK-like) 7 289 IPR011009 -
Lsi04g02076 443 Gene3D Transferase(Phosphotransferase) domain 1 91 271 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01264 Lsi-Chr3:23322728 Lsi04g02076 Lsi-Chr4:27926843 0 dispersed
Lsi04g02076 Lsi-Chr4:27926843 Lsi06g01165 Lsi-Chr6:21900407 1.44E-179 dispersed
Lsi04g02076 Lsi-Chr4:27926843 Lsi02g00815 Lsi-Chr2:7601919 2.07E-172 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83607 PF00069 Pkinase 4.10E-74 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02076 - - csv:101213773 838.565