Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02085 ATGACGGTTGAACCTAGACTCGATGATCCAATTGACCAATTTCCCACTGGAATGCGTGTTCTCGCCGTTGACGACGATCCCACTTGTCTTTTGATCTTGGAGACTTTGCTTCGTCGTTGCCAGTATCATGTCACTACAACTAATCAGGCTATTATGGCACTCAAGTTGCTGAGAGAAAACAAGAACAAGTTTGATGTGGTTATCAGTGATGTCCACATGCCTGACATGGATGGATTTAAGCTGCTGGAGCTTGTTGGGCTGGAAATGGACCTTCCTGTTATTATGCTCTCTGCAAATGGAGATCCCAAACTTGTTATGAAAGGAATTACTCATGGAGCATGTGATTACTTGTTGAAACCTGTTCGCATTGAGGAGCTAAAGAACATTTGGCAGCATGTAATCAGAAGAAAGAAGTTCGATCCAAAGGACCAAATGAATTCTGGCAATCAGGACAGGCCTGATTCTGAGAATGGTGAAGAAGCAGGAGATCCAAATGGGAAATTTAATAAAAAAAGGAAGGACCAGAACTATAACGAAGATGATGACCAGGACTATGGGCAAGAGAATGATGACTCGTCATCCCAGAAGAAGCCTCGTGTTGTTTGGTCAGTGGAGCTGCATAGGAAGTTTGTAAATGCTGTTAACCAGTTGGGCATCGACAAGGCAGTGCCTAAAAAGATTTTGGACTTGATGAATGTCGAAAAGCTCACAAGAGAAAATGTAGCTAGCCATCTCCAGAAATACAGGCTTTATCTAAAGAGAATCAGCTGTGTGGCAAACCAGCAAGCTAACATGGTCACTGCATTGAGCAGCGCAGATCCTTCTTATTTGAGAATTGGTTCCCTTAGCGGAATTGGGAATTTCCATTCTTTGACTGGACCTCCACAGTTTCCTAGCACTGCTTATAGATCTATCCCAACCACCGGGATGCTTGGTCGATTGAATACTCCTGCTTGTATGGGTATGCATGGCCTTTCTTCCCCGGGAACAGTCCAACTGGGTAATTTGAACAATTCAAGCAATGATCAGTCTACATTTCAGCCAATCATGCTTTCTGGAAACCGCAGTGGGAATATTTTTCGGGGAATGCCTGAGACATCAGAACTCGATCAACTACAACATGTTAAGCATGGGACCCATGTGGACAATCTCTCTTCTGCTTTTGATGAGAGAACAGTATTTCCTGCTTCCATTGGCCTACCAAATGCAAACATGTCTTCCAGTACTCTAAGTAATCCTCTTTTAGGATTAACTAATGATCCCCTGATTTCAGAAGTCCAGCATCATGAAGTGAATGGTGGTAGAAAATTTGGAACTCAATCTTCCATTTCGGTAGTATCTTCGAATTCAGATAGCTCACGTCCTTCACTAGATAATGTTAGATGCACCGGTGACAATTGGTCAAACACCGTTCATTCATCTAGGGTGCACTTGAATACAATTCCATCTAGCAACCTTTCTAATGTTGCTACTTCCTACCATAGTCAGTTGAGAGACAATACTACCAGTGCATTGCATATAGGAAATTGTCTTTCTGACATTTCTTCTATTACTTCAATATCTACTCAGTCTCATGATTCGAGAATAGATTCTCAACGTCAAGCAGCCACAACTAGCAACAGATTTGATCAAATGATCTCAAAGGTTCCTGTTCAAGATTGGAATGATCATAAAGAGGATTCCTATTACCACACAACTATGGCCTGTAGCTCATCAAATTCTTTGATACCAGTGAATGGTACTGCAGAGACTTTGCCTAAGCGCTTGGAAAATCAGAACACAATCTTCTCTGGTAGCAAGGATTTTAATGTGACTGGTCAAGCAAATGTTCTTGATCATGCAATAGTGGAACATGATCAATTCAAGAAATCAACCATGGAGACATCACTCATGTTGAAACAAGGTTACCTGTATGATCATCAGCAAAAGATGCAATCCAGATTTTCATCAAGTAACTGTGGCTCCTTGGAAGACATAGCATGTGCGATGATGAAACAGGAACAAGATGATGGAAAATTATTGGAAGGAGACTTTGGATGTGATAATTATCCCATTGGAACATGCATGTGA 2070 41.59 MTVEPRLDDPIDQFPTGMRVLAVDDDPTCLLILETLLRRCQYHVTTTNQAIMALKLLRENKNKFDVVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKKFDPKDQMNSGNQDRPDSENGEEAGDPNGKFNKKRKDQNYNEDDDQDYGQENDDSSSQKKPRVVWSVELHRKFVNAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISCVANQQANMVTALSSADPSYLRIGSLSGIGNFHSLTGPPQFPSTAYRSIPTTGMLGRLNTPACMGMHGLSSPGTVQLGNLNNSSNDQSTFQPIMLSGNRSGNIFRGMPETSELDQLQHVKHGTHVDNLSSAFDERTVFPASIGLPNANMSSSTLSNPLLGLTNDPLISEVQHHEVNGGRKFGTQSSISVVSSNSDSSRPSLDNVRCTGDNWSNTVHSSRVHLNTIPSSNLSNVATSYHSQLRDNTTSALHIGNCLSDISSITSISTQSHDSRIDSQRQAATTSNRFDQMISKVPVQDWNDHKEDSYYHTTMACSSSNSLIPVNGTAETLPKRLENQNTIFSGSKDFNVTGQANVLDHAIVEHDQFKKSTMETSLMLKQGYLYDHQQKMQSRFSSSNCGSLEDIACAMMKQEQDDGKLLEGDFGCDNYPIGTCM 689
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28044292 28049277 - Lsi04G020850.1 Lsi04g02085 662134

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02085 689 PIRSF RR_ARR_type-B 1 689 IPR017053 GO:0003677|GO:0003700|GO:0009736
Lsi04g02085 689 Pfam Myb-like DNA-binding domain 199 249 IPR001005 -
Lsi04g02085 689 Gene3D - 193 256 - -
Lsi04g02085 689 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR10 1 664 - -
Lsi04g02085 689 CDD REC_typeB_ARR-like 20 134 - -
Lsi04g02085 689 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Lsi04g02085 689 SUPERFAMILY CheY-like 16 141 IPR011006 -
Lsi04g02085 689 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 194 253 IPR017930 -
Lsi04g02085 689 SUPERFAMILY Homeodomain-like 195 254 IPR009057 -
Lsi04g02085 689 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160
Lsi04g02085 689 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 664 IPR045279 GO:0009736
Lsi04g02085 689 MobiDBLite consensus disorder prediction 140 197 - -
Lsi04g02085 689 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 197 250 IPR006447 GO:0003677
Lsi04g02085 689 MobiDBLite consensus disorder prediction 140 180 - -
Lsi04g02085 689 SMART REC_2 18 130 IPR001789 GO:0000160
Lsi04g02085 689 Gene3D - 18 184 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02085 - - K14491 csv:101215220 1282.7
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01341 Lsi-Chr2:17893153 Lsi04g02085 Lsi-Chr4:28044292 1.76E-25 dispersed
Lsi04g00217 Lsi-Chr4:2274281 Lsi04g02085 Lsi-Chr4:28044292 3.61E-22 dispersed
Lsi04g02085 Lsi-Chr4:28044292 Lsi11g00368 Lsi-Chr11:3798647 9.45E-137 dispersed
Lsi05g00053 Lsi-Chr5:1115992 Lsi04g02085 Lsi-Chr4:28044292 1.82E-19 dispersed
Lsi10g00074 Lsi-Chr10:1268799 Lsi04g02085 Lsi-Chr4:28044292 1.72E-18 dispersed
Lsi04g02085 Lsi-Chr4:28044292 Lsi06g01039 Lsi-Chr6:20575480 1.02E-143 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi08g01621 . 52 256 Response Regulator Gene Family AT3G16857 53.8 1.7e-54 211.1
Lsi09g01466 . 37 292 Response Regulator Gene Family AT4G31920 55.9 4.6e-72 269.2
Lsi05g01569 . 16 271 Response Regulator Gene Family AT4G31920 53.7 2.8e-69 260.0
Lsi08g01621 . 11 259 Response Regulator Gene Family AT4G31920 50.4 5.6e-62 235.7
Lsi04g02085 . 93 255 Response Regulator Gene Family AT1G67710 55.0 9.8e-41 164.9
Lsi05g01569 . 99 262 Response Regulator Gene Family AT1G67710 54.7 6.4e-40 162.2
Lsi11g00368 . 15 348 Response Regulator Gene Family AT2G25180 54.4 2.2e-80 297.0
Lsi05g01569 . 18 291 Response Regulator Gene Family AT2G25180 55.6 3.9e-77 286.2
Lsi08g01621 . 11 256 Response Regulator Gene Family AT2G25180 55.6 1.1e-68 258.1
Lsi09g01466 . 100 333 Response Regulator Gene Family AT2G01760 51.4 7.2e-54 208.0
Lsi08g01621 . 72 259 Response Regulator Gene Family AT2G01760 51.0 1.6e-48 190.3
Lsi08g01621 . 9 258 Response Regulator Gene Family AT5G58080 51.0 1.3e-62 238.0
Lsi09g01466 . 38 263 Response Regulator Gene Family AT4G16110 67.1 9.3e-80 295.0
Lsi05g01569 . 12 242 Response Regulator Gene Family AT4G16110 66.1 3.6e-79 293.1
Lsi04g02085 . 12 233 Response Regulator Gene Family AT4G16110 59.7 6.7e-62 235.7
Lsi08g01621 . 10 235 Response Regulator Gene Family AT4G16110 54.5 5.3e-59 226.1
Lsi11g00368 . 18 251 Response Regulator Gene Family AT4G16110 55.0 1.8e-51 201.1
Lsi06g01039 . 17 235 Response Regulator Gene Family AT4G16110 52.0 2.7e-47 187.2
Lsi06g01513 . 21 188 Response Regulator Gene Family AT3G48100 68.2 1.4e-54 209.5
Lsi04g00507 . 29 162 Response Regulator Gene Family AT3G48100 73.1 1.9e-51 199.1
Lsi09g00795 . 11 151 Response Regulator Gene Family AT3G48100 58.9 7.7e-40 160.6
Lsi03g01597 CCT 3 156 Response Regulator Gene Family AT3G48100 53.9 1.0e-39 160.2
Lsi04g00507 . 1 189 Response Regulator Gene Family AT1G59940 61.7 7.8e-56 214.5
Lsi06g01513 . 8 179 Response Regulator Gene Family AT1G59940 60.5 1.0e-47 187.6
Lsi03g01597 CCT 8 154 Response Regulator Gene Family AT1G59940 57.1 4.6e-40 162.2
Lsi09g00795 . 5 152 Response Regulator Gene Family AT1G59940 58.1 6.0e-40 161.8
Lsi04g01015 . 18 150 Response Regulator Gene Family AT1G59940 61.7 3.3e-38 156.0
Lsi04g00507 . 16 185 Response Regulator Gene Family AT1G10470 66.5 3.3e-54 208.8
Lsi06g01513 . 25 172 Response Regulator Gene Family AT1G10470 64.9 7.3e-46 181.0
Lsi03g01597 CCT 10 154 Response Regulator Gene Family AT1G10470 57.9 6.0e-40 161.4
Lsi09g00795 . 11 157 Response Regulator Gene Family AT1G10470 59.2 2.3e-39 159.5
Lsi04g01015 . 20 150 Response Regulator Gene Family AT1G10470 61.1 1.6e-37 153.3
Lsi06g01513 . 21 188 Response Regulator Gene Family AT3G48100 68.2 1.4e-54 209.5
Lsi04g00507 . 29 162 Response Regulator Gene Family AT3G48100 73.1 1.9e-51 199.1
Lsi09g00795 . 11 151 Response Regulator Gene Family AT3G48100 58.9 7.7e-40 160.6
Lsi03g01597 CCT 3 156 Response Regulator Gene Family AT3G48100 53.9 1.0e-39 160.2
Lsi04g00507 . 11 175 Response Regulator Gene Family AT5G62920 64.2 3.7e-50 194.9
Lsi06g01513 . 22 168 Response Regulator Gene Family AT5G62920 71.4 1.1e-49 193.4
Lsi09g00795 . 11 151 Response Regulator Gene Family AT5G62920 58.9 5.9e-40 161.0
Lsi03g01597 CCT 10 156 Response Regulator Gene Family AT5G62920 55.1 2.3e-39 159.1
Lsi06g01513 . 30 167 Response Regulator Gene Family AT1G19050 73.9 2.4e-50 195.7
Lsi04g00507 . 28 185 Response Regulator Gene Family AT1G19050 59.7 8.9e-45 177.2
Lsi03g01597 CCT 8 159 Response Regulator Gene Family AT1G19050 52.6 2.1e-38 156.0
Lsi09g00795 . 3 154 Response Regulator Gene Family AT1G19050 53.3 4.7e-38 154.8
Lsi04g01015 . 20 151 Response Regulator Gene Family AT1G19050 60.6 2.3e-37 152.5
Lsi03g01597 CCT 1 160 Response Regulator Gene Family AT2G41310 72.5 2.0e-58 222.6
Lsi09g00795 . 1 153 Response Regulator Gene Family AT2G41310 64.9 2.9e-49 192.2
Lsi04g00507 . 25 158 Response Regulator Gene Family AT2G41310 58.9 3.4e-42 168.7
Lsi06g01513 . 30 164 Response Regulator Gene Family AT2G41310 61.7 2.9e-41 165.6
Lsi04g01015 . 20 151 Response Regulator Gene Family AT2G41310 55.9 1.2e-39 160.2
Lsi03g01597 CCT 1 158 Response Regulator Gene Family AT3G57040 77.8 4.5e-61 231.5
Lsi09g00795 . 8 153 Response Regulator Gene Family AT3G57040 67.8 1.6e-50 196.4
Lsi04g00507 . 25 158 Response Regulator Gene Family AT3G57040 60.1 5.0e-44 174.9
Lsi06g01513 . 29 164 Response Regulator Gene Family AT3G57040 61.1 1.8e-41 166.4
Lsi04g01015 . 18 151 Response Regulator Gene Family AT3G57040 56.4 6.3e-39 157.9
Lsi06g01513 . 17 187 Response Regulator Gene Family AT1G74890 68.0 2.1e-54 209.1
Lsi04g00507 . 25 184 Response Regulator Gene Family AT1G74890 60.5 7.2e-47 184.1
Lsi09g00795 . 11 146 Response Regulator Gene Family AT1G74890 60.3 7.3e-39 157.5
Lsi03g01597 CCT 8 154 Response Regulator Gene Family AT1G74890 54.4 1.2e-38 156.8
Lsi04g01015 . 12 147 Response Regulator Gene Family AT1G74890 58.1 4.0e-37 151.8
Lsi04g01015 . 20 152 Response Regulator Gene Family AT2G40670 70.1 2.6e-47 185.3
Lsi03g01597 CCT 6 156 Response Regulator Gene Family AT2G40670 55.3 2.4e-40 162.2
Lsi04g00507 . 26 159 Response Regulator Gene Family AT2G40670 56.2 1.2e-39 159.8
Lsi06g01513 . 33 165 Response Regulator Gene Family AT2G40670 60.3 6.4e-38 154.1
Lsi04g01015 . 20 152 Response Regulator Gene Family AT3G56380 71.6 1.3e-48 189.5
Lsi06g01513 . 18 165 Response Regulator Gene Family AT3G56380 57.0 2.2e-40 162.2
Lsi04g00507 . 26 159 Response Regulator Gene Family AT3G56380 54.1 4.9e-40 161.0
Lsi03g01597 CCT 6 156 Response Regulator Gene Family AT3G56380 53.9 1.9e-39 159.1
Lsi09g00795 . 11 154 Response Regulator Gene Family AT3G56380 55.2 3.0e-37 151.8
Lsi08g01621 . 52 256 Response Regulator Gene Family AT3G16857 53.8 1.7e-54 211.1
Lsi09g01466 . 38 263 Response Regulator Gene Family AT4G16110 67.1 9.3e-80 295.0
Lsi05g01569 . 12 242 Response Regulator Gene Family AT4G16110 66.1 3.6e-79 293.1
Lsi04g02085 . 12 233 Response Regulator Gene Family AT4G16110 59.7 6.7e-62 235.7
Lsi08g01621 . 10 235 Response Regulator Gene Family AT4G16110 54.5 5.3e-59 226.1
Lsi11g00368 . 18 251 Response Regulator Gene Family AT4G16110 55.0 1.8e-51 201.1
Lsi06g01039 . 17 235 Response Regulator Gene Family AT4G16110 52.0 2.7e-47 187.2
Lsi09g01466 . 37 292 Response Regulator Gene Family AT4G31920 55.9 4.6e-72 269.2
Lsi05g01569 . 16 271 Response Regulator Gene Family AT4G31920 53.7 2.8e-69 260.0
Lsi08g01621 . 11 259 Response Regulator Gene Family AT4G31920 50.4 5.6e-62 235.7
Lsi04g02085 . 93 255 Response Regulator Gene Family AT1G67710 55.0 9.8e-41 164.9
Lsi05g01569 . 99 262 Response Regulator Gene Family AT1G67710 54.7 6.4e-40 162.2
Lsi11g00368 . 15 348 Response Regulator Gene Family AT2G25180 54.4 2.2e-80 297.0
Lsi05g01569 . 18 291 Response Regulator Gene Family AT2G25180 55.6 3.9e-77 286.2
Lsi08g01621 . 11 256 Response Regulator Gene Family AT2G25180 55.6 1.1e-68 258.1
Lsi09g01466 . 100 333 Response Regulator Gene Family AT2G01760 51.4 7.2e-54 208.0
Lsi08g01621 . 72 259 Response Regulator Gene Family AT2G01760 51.0 1.6e-48 190.3
Lsi08g01621 . 9 258 Response Regulator Gene Family AT5G58080 51.0 1.3e-62 238.0
Lsi01g01374 . 38 185 Response Regulator Gene Family AT5G60100 60.9 6.4e-47 185.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009381 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25248 PF00072 Response_reg 8.90E-23 CL0304 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02085 Lsi_Chr04 FPKM 7.759281 7.914742 4.589491 4.891063 1.704708 1.728673 2.278384 19.430466 17.279634 19.922743