Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02085 ATGACGGTTGAACCTAGACTCGATGATCCAATTGACCAATTTCCCACTGGAATGCGTGTTCTCGCCGTTGACGACGATCCCACTTGTCTTTTGATCTTGGAGACTTTGCTTCGTCGTTGCCAGTATCATGTCACTACAACTAATCAGGCTATTATGGCACTCAAGTTGCTGAGAGAAAACAAGAACAAGTTTGATGTGGTTATCAGTGATGTCCACATGCCTGACATGGATGGATTTAAGCTGCTGGAGCTTGTTGGGCTGGAAATGGACCTTCCTGTTATTATGCTCTCTGCAAATGGAGATCCCAAACTTGTTATGAAAGGAATTACTCATGGAGCATGTGATTACTTGTTGAAACCTGTTCGCATTGAGGAGCTAAAGAACATTTGGCAGCATGTAATCAGAAGAAAGAAGTTCGATCCAAAGGACCAAATGAATTCTGGCAATCAGGACAGGCCTGATTCTGAGAATGGTGAAGAAGCAGGAGATCCAAATGGGAAATTTAATAAAAAAAGGAAGGACCAGAACTATAACGAAGATGATGACCAGGACTATGGGCAAGAGAATGATGACTCGTCATCCCAGAAGAAGCCTCGTGTTGTTTGGTCAGTGGAGCTGCATAGGAAGTTTGTAAATGCTGTTAACCAGTTGGGCATCGACAAGGCAGTGCCTAAAAAGATTTTGGACTTGATGAATGTCGAAAAGCTCACAAGAGAAAATGTAGCTAGCCATCTCCAGAAATACAGGCTTTATCTAAAGAGAATCAGCTGTGTGGCAAACCAGCAAGCTAACATGGTCACTGCATTGAGCAGCGCAGATCCTTCTTATTTGAGAATTGGTTCCCTTAGCGGAATTGGGAATTTCCATTCTTTGACTGGACCTCCACAGTTTCCTAGCACTGCTTATAGATCTATCCCAACCACCGGGATGCTTGGTCGATTGAATACTCCTGCTTGTATGGGTATGCATGGCCTTTCTTCCCCGGGAACAGTCCAACTGGGTAATTTGAACAATTCAAGCAATGATCAGTCTACATTTCAGCCAATCATGCTTTCTGGAAACCGCAGTGGGAATATTTTTCGGGGAATGCCTGAGACATCAGAACTCGATCAACTACAACATGTTAAGCATGGGACCCATGTGGACAATCTCTCTTCTGCTTTTGATGAGAGAACAGTATTTCCTGCTTCCATTGGCCTACCAAATGCAAACATGTCTTCCAGTACTCTAAGTAATCCTCTTTTAGGATTAACTAATGATCCCCTGATTTCAGAAGTCCAGCATCATGAAGTGAATGGTGGTAGAAAATTTGGAACTCAATCTTCCATTTCGGTAGTATCTTCGAATTCAGATAGCTCACGTCCTTCACTAGATAATGTTAGATGCACCGGTGACAATTGGTCAAACACCGTTCATTCATCTAGGGTGCACTTGAATACAATTCCATCTAGCAACCTTTCTAATGTTGCTACTTCCTACCATAGTCAGTTGAGAGACAATACTACCAGTGCATTGCATATAGGAAATTGTCTTTCTGACATTTCTTCTATTACTTCAATATCTACTCAGTCTCATGATTCGAGAATAGATTCTCAACGTCAAGCAGCCACAACTAGCAACAGATTTGATCAAATGATCTCAAAGGTTCCTGTTCAAGATTGGAATGATCATAAAGAGGATTCCTATTACCACACAACTATGGCCTGTAGCTCATCAAATTCTTTGATACCAGTGAATGGTACTGCAGAGACTTTGCCTAAGCGCTTGGAAAATCAGAACACAATCTTCTCTGGTAGCAAGGATTTTAATGTGACTGGTCAAGCAAATGTTCTTGATCATGCAATAGTGGAACATGATCAATTCAAGAAATCAACCATGGAGACATCACTCATGTTGAAACAAGGTTACCTGTATGATCATCAGCAAAAGATGCAATCCAGATTTTCATCAAGTAACTGTGGCTCCTTGGAAGACATAGCATGTGCGATGATGAAACAGGAACAAGATGATGGAAAATTATTGGAAGGAGACTTTGGATGTGATAATTATCCCATTGGAACATGCATGTGA 2070 41.59 MTVEPRLDDPIDQFPTGMRVLAVDDDPTCLLILETLLRRCQYHVTTTNQAIMALKLLRENKNKFDVVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKKFDPKDQMNSGNQDRPDSENGEEAGDPNGKFNKKRKDQNYNEDDDQDYGQENDDSSSQKKPRVVWSVELHRKFVNAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISCVANQQANMVTALSSADPSYLRIGSLSGIGNFHSLTGPPQFPSTAYRSIPTTGMLGRLNTPACMGMHGLSSPGTVQLGNLNNSSNDQSTFQPIMLSGNRSGNIFRGMPETSELDQLQHVKHGTHVDNLSSAFDERTVFPASIGLPNANMSSSTLSNPLLGLTNDPLISEVQHHEVNGGRKFGTQSSISVVSSNSDSSRPSLDNVRCTGDNWSNTVHSSRVHLNTIPSSNLSNVATSYHSQLRDNTTSALHIGNCLSDISSITSISTQSHDSRIDSQRQAATTSNRFDQMISKVPVQDWNDHKEDSYYHTTMACSSSNSLIPVNGTAETLPKRLENQNTIFSGSKDFNVTGQANVLDHAIVEHDQFKKSTMETSLMLKQGYLYDHQQKMQSRFSSSNCGSLEDIACAMMKQEQDDGKLLEGDFGCDNYPIGTCM 689
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28044292 28049277 - Lsi04G020850.1 Lsi04g02085 662134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02085 689 PIRSF RR_ARR_type-B 1 689 IPR017053 GO:0003677|GO:0003700|GO:0009736
Lsi04g02085 689 Pfam Myb-like DNA-binding domain 199 249 IPR001005 -
Lsi04g02085 689 Gene3D - 193 256 - -
Lsi04g02085 689 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR10 1 664 - -
Lsi04g02085 689 CDD REC_typeB_ARR-like 20 134 - -
Lsi04g02085 689 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Lsi04g02085 689 SUPERFAMILY CheY-like 16 141 IPR011006 -
Lsi04g02085 689 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 194 253 IPR017930 -
Lsi04g02085 689 SUPERFAMILY Homeodomain-like 195 254 IPR009057 -
Lsi04g02085 689 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160
Lsi04g02085 689 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 664 IPR045279 GO:0009736
Lsi04g02085 689 MobiDBLite consensus disorder prediction 140 197 - -
Lsi04g02085 689 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 197 250 IPR006447 GO:0003677
Lsi04g02085 689 MobiDBLite consensus disorder prediction 140 180 - -
Lsi04g02085 689 SMART REC_2 18 130 IPR001789 GO:0000160
Lsi04g02085 689 Gene3D - 18 184 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01341 Lsi-Chr2:17893153 Lsi04g02085 Lsi-Chr4:28044292 1.76E-25 dispersed
Lsi04g00217 Lsi-Chr4:2274281 Lsi04g02085 Lsi-Chr4:28044292 3.61E-22 dispersed
Lsi04g02085 Lsi-Chr4:28044292 Lsi11g00368 Lsi-Chr11:3798647 9.45E-137 dispersed
Lsi05g00053 Lsi-Chr5:1115992 Lsi04g02085 Lsi-Chr4:28044292 1.82E-19 dispersed
Lsi10g00074 Lsi-Chr10:1268799 Lsi04g02085 Lsi-Chr4:28044292 1.72E-18 dispersed
Lsi04g02085 Lsi-Chr4:28044292 Lsi06g01039 Lsi-Chr6:20575480 1.02E-143 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25248 PF00072 Response_reg 8.90E-23 CL0304 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02085 - K14491 csv:101215220 1282.7