Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02091 ACTACCAATTTTTGTGCTCTGTTTTTCTTTGAGGCATTTTCACAAACACCTTGTGGCTTTATAAAAAGTTATGCCATGGCCAGACCGCAAAAGCGCTACCGTGGTGTAAGACAGAGGCATTGGGGCTCTTGGGTTTCTGAAATTCGTCATCCTTTATTGAAAACAAGAATTTGGTTGGGAACATTTGAAACGGCGGAGGATGCTGCGAGAGCTTACGATGAAGCTGCAAGATTAATGTGTGGACCAAAAGCAAGAACGAATTTCCCATACAATCCAAATGCAATTCAATCCTCGAATTTCAGGATTTTGTCGGCTAATTTGACTGCAAAATTGCATCGGTGTTATATGGCTTCTTTGCAGATTAGTAACCAAGCTTCAAGGGAGTTTAAAAGAGACATTCCGGCGCCGGCGCCGCTGCCTTATGCGGTTGTTAGCACCGGTGTGGCGAGTTCAGCGGTGGAGGAGATTAGACCGGCGGCGGAGGAAGGGTCGTGTACGGCGGATTGGATGGTGGGAAGTGTGAAAATGGAAAATGAATTTGGGGAGCTTAAATTGTTGGAAGATGATCACATTGAGCAAATGATTGAGGAGCTTCTTTATTATGGATCCATGGAGTTTTGTTTGTGA 627 44.66 TTNFCALFFFEAFSQTPCGFIKSYAMARPQKRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFPYNPNAIQSSNFRILSANLTAKLHRCYMASLQISNQASREFKRDIPAPAPLPYAVVSTGVASSAVEEIRPAAEEGSCTADWMVGSVKMENEFGELKLLEDDHIEQMIEELLYYGSMEFCL 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28094084 28094882 - Lsi04G020910.1 Lsi04g02091 662140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02091 208 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003 26 207 - -
Lsi04g02091 208 CDD AP2 31 91 IPR001471 GO:0003700|GO:0006355
Lsi04g02091 208 SUPERFAMILY DNA-binding domain 32 91 IPR016177 GO:0003677
Lsi04g02091 208 SMART rav1_2 32 95 IPR001471 GO:0003700|GO:0006355
Lsi04g02091 208 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 26 207 - -
Lsi04g02091 208 Gene3D AP2/ERF domain 31 90 IPR036955 GO:0003700|GO:0006355
Lsi04g02091 208 ProSiteProfiles AP2/ERF domain profile. 32 89 IPR001471 GO:0003700|GO:0006355
Lsi04g02091 208 Pfam AP2 domain 32 81 IPR001471 GO:0003700|GO:0006355
Lsi04g02091 208 PRINTS Ethylene responsive element binding protein signature 33 44 IPR001471 GO:0003700|GO:0006355
Lsi04g02091 208 PRINTS Ethylene responsive element binding protein signature 55 71 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02091 Lsi-Chr4:28094084 Lsi07g00438 Lsi-Chr7:4672409 2.92E-51 dispersed
Lsi02g02675 Lsi-Chr2:33219838 Lsi04g02091 Lsi-Chr4:28094084 5.41E-67 wgd
Lsi04g02091 Lsi-Chr4:28094084 Lsi08g01234 Lsi-Chr8:20802008 4.70E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25250 PF00847 AP2 8.20E-12 CL0081 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02091 - - cmo:103493770 309.686