Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02098 ATGGCGTACCACAATCATCTCTCACAAGACCTTCCTCTTCACTTTTCTGACCACCACCAAAATCAACCTCTCTCTGATACTTCTCTCCGTACCATTTTGCCGGACCAACTTCCCGGCGGCCACTCCTCGCCGGACCCCAAGTCTCATCAACCCCATCACCACCAGCATCACCATCCACTTCAGACGGCGCCGAATTGGCTCAACAACGCACTTCTCCGTAACCAAAACCCCCATTCTCACTACTCTACCGACACCGCCACCACCGCCGCTGCCAATACTAATTTTCTTAACCTTCACACCACTGCATCCGATTCTACCGTTTCTCACTCCTCTAACCAATGGCTTTCCCGCCCAATCCTCCATCGTAACCAAAGTGATGTCATCGACGATGTCACCGCCGCCGCTGCCGGTGATGCTATGATCGGTGCTGCTACTGCAGCGCTCTCTCACGATTCTGTTGACTTGAAAAATGATGCTAATAGCGGCGACGGATTGAACAAGAGCGAGGGTATGGTGATGGAAACTGGTGCCGGTGGTGAAGGGGTTTTGAATTGGCAACATGCTCGTTATAAAGCTGAGATTCTTTCTCATCCTCTTTACGAGCAGCTTCTTTCCGCTCATGTTGCTTGCCTTCGCATCGCAACGCCGGTCGATCAATTACCAAGGATCGACGCTCAGCTCGCTCAGTCGCAGAATGTCGTCGCTAAGTACTCCGCCTTGGGCCACTCCGCTCCGCCGTCCATGGTTGGTGATGATAAAGAGCTTGATCAGTTCATGGAAGCTAAATTGATGTTGAAACTTCCATTGCTATTGCTGTTTAAGTATATGAATGTTTTCCTTTTCATTTATAATCCATTGGGTTATTTGAGTTGGGTTTTGGGTATTAGATATTGGACACATTATGTTCTTTTGCTTTGTTCATTCAAAGAACAACTCCAACAACATGTTCGAGTCCATGCAATGGAAGCAGTAATGGCTTGCTGGGACATTGAGCAGTCCTTACAAAGCTTAACAGGAGTTTCACCCGGTGAAGGTACAGGAGCAACAATGTCAGACGACGACGACGACCAGGTCGACAGCGATGCAAATCTGTTTGATGGAAGCTTAGAGGGTCCAGACACCATGGGATTTGGCCCTCTTATTCCCACAGAGAGTGAGAGGTCCTTGATGGAGAGAGTCAGGCAAGAACTGAAGCATGAATTAAAAGCGGGTTACAAGGAGAAAATTGTGGATATAAGGGAAGAAATTCTGAGAAAGAGAAGAGCTGGAAAACTCCCTGGTGACACCACCTCTGTCCTCAAACAATGGTGGCAATCACATTCAAAGTGGCCTTATCCTACAGAGGAAGACAAGGCAAGGTTAGTGCAAGAAACTGGTTTACAACTGAAACAGATAAACAATTGGTTCATTAACCAAAGGAAGAGAAACTGGCACAGCAATCCTTCAAGTTCAACAAACTTGAAAAGCAAACGCAAAAGGTAA 1482 47.3 MAYHNHLSQDLPLHFSDHHQNQPLSDTSLRTILPDQLPGGHSSPDPKSHQPHHHQHHHPLQTAPNWLNNALLRNQNPHSHYSTDTATTAAANTNFLNLHTTASDSTVSHSSNQWLSRPILHRNQSDVIDDVTAAAAGDAMIGAATAALSHDSVDLKNDANSGDGLNKSEGMVMETGAGGEGVLNWQHARYKAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSALGHSAPPSMVGDDKELDQFMEAKLMLKLPLLLLFKYMNVFLFIYNPLGYLSWVLGIRYWTHYVLLLCSFKEQLQQHVRVHAMEAVMACWDIEQSLQSLTGVSPGEGTGATMSDDDDDQVDSDANLFDGSLEGPDTMGFGPLIPTESERSLMERVRQELKHELKAGYKEKIVDIREEILRKRRAGKLPGDTTSVLKQWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSSSTNLKSKRKR 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28156679 28161446 + Lsi04G020980.1 Lsi04g02098 662147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02098 493 Pfam Homeobox KN domain 436 475 IPR008422 GO:0003677|GO:0006355
Lsi04g02098 493 MobiDBLite consensus disorder prediction 473 493 - -
Lsi04g02098 493 SUPERFAMILY Homeodomain-like 418 482 IPR009057 -
Lsi04g02098 493 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 51 265 - -
Lsi04g02098 493 SMART KNOX1_2 188 232 IPR005540 GO:0003677|GO:0005634
Lsi04g02098 493 ProSiteProfiles ELK domain profile. 396 416 IPR005539 GO:0003677
Lsi04g02098 493 Pfam ELK domain 396 417 IPR005539 GO:0003677
Lsi04g02098 493 SMART HOX_1 418 483 IPR001356 GO:0003677
Lsi04g02098 493 SMART ELK_2 396 417 IPR005539 GO:0003677
Lsi04g02098 493 Pfam KNOX2 domain 299 338 IPR005541 GO:0003677|GO:0005634
Lsi04g02098 493 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 297 493 - -
Lsi04g02098 493 MobiDBLite consensus disorder prediction 30 61 - -
Lsi04g02098 493 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 51 265 - -
Lsi04g02098 493 CDD homeodomain 419 480 IPR001356 GO:0003677
Lsi04g02098 493 ProSiteProfiles 'Homeobox' domain profile. 416 479 IPR001356 GO:0003677
Lsi04g02098 493 SMART KNOX2_2 245 339 IPR005541 GO:0003677|GO:0005634
Lsi04g02098 493 Pfam KNOX1 domain 190 231 IPR005540 GO:0003677|GO:0005634
Lsi04g02098 493 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 297 493 - -
Lsi04g02098 493 Gene3D - 417 478 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02098 Lsi-Chr4:28156679 Lsi09g00319 Lsi-Chr9:3295926 5.08E-38 dispersed
Lsi04g02098 Lsi-Chr4:28156679 Lsi08g01229 Lsi-Chr8:20736876 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25251 PF03791 KNOX2 1.90E-12 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02098 - - bhj:120085761 817.379