Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02102 ATGGGGAAGCCAGCGGGGAAGAAGAAGGAAAATGTTGGGGAGAAGCCTGGAAATGCTAATTCTAAGACTGCTCGACCGTCTGACCGAAACTCGAAGGCGTTCGATGAAGACACGGCCATCTTCATAAACATGTCTCAAGAGCTCAAGGAGGAAGGCAACCGGCTATTCCAGAAGCGAGATCATGAAGGCGCCATGTTGAAATATGAGAAAGCTCTTAAGCTTTTGCCGAGAAATCATATTGATGTTGCTCAGCTCCATAGCAATATGGCTGCTTGTTATATGCAGTTGGGATTGGGAGAGTATCCACGGGCGATTAACGAGTGCAATTTGGCATTGGAGGCTCATCCAAGGTACAGCAAGGCGCTGCTGAAGAGAGCAAGGTGTTACGAGGCTTTGAATCGGTTTGATTTGGCGTTGAGAGATGTGAATACTGTTTTGAGCTTGGAGACTAATAACCTCTCTGCTTTGGAAATTTTGGATAGTGTCAAAAACACAATGAGAGAAAAGGGCATTGATGTCGACGAGAAAGAAATCGGTTTGGGCATCGTAAAGCTACCTCCGGCAGCTCATCTGCGAAAGGTAGTTAGAGAGAAACTAAGGAAGAAGAAGAATAAGAAAGTTGAGGAAAAGACAGATGATAAGTTGATTGTAGAGGAGAAGGTTGATCAGGTGATTCAGGTTGATCATGTTGAAGATAAGGAAGTTACAAAGAATACTATTGAGGAAGACAAATTATTCGTTGAACCGATCGAGGAAAAACCGGTCTCAAAGACGGTGAAGTTAGTACTTGGAGAAGACATAAGATGGGCGCAGTTACCTACAAATTGCACAATGAAATTGGTGAGTGAGATAGTTCGAGACAGATTTCCAAGCTTGAAGGGTGTTCTTGTGAAGTACAGAGATCAAGAGGGTGATTTGGTAACGATTACAACGACTGAGGAGTTAAGGTCAGTTGAATCATCTAGTCAGTTGCAGAGTTCACTTAGACTTTACATCACAGAGGTCAGTCCTGATCAGGAACCTTCCTACAAGGAAATCGAAAACGAGGAGAAGCTTCCAGAGGTTGATAAAAGAAGAAATGCAGTGGTGGTGAATGGAGATTCAGAAAATGATAAAGAGGTTATAAGGGGTACAACTTCGGTTGAGGACTGGATAGTTCAGTTTGCAAGATTGTTCAAGAACCACGTTGGGGTTGATTCTGATTCATACTTGGATCTTCACGAGCTTGGAATGAAGCTGTACTCGGAAGCGATGGAGGACTCCGTAACAGGAGACAGTGCACAGGAACTTTTCGAAATTGCCGCAGACAAATTTCAAGAAATGGCAGCTCTGGCATTCTTCAACTGGGGCAATGTTCACATGTCCAGAGCAAGGAAGCAGGTTTTCTTTCCAGAAGACAGTTCGAGAGAAACTTTACTTCTTCGGATTAAGGATGCGTACGAGTGGGCGCGAAAAGAATACAAAAAAGCTGAAATGAGATATGAAGAAGCTCTAAATGTAAAACCTGATTTCTATGAAGGTTTCCTTGCACTTGGGCAGCAGCAGTTTGAGCAAGCTAAGCTTTGCTGGTATAATGCAATTGCTAGCGGAAGCAAAATCGATTTGGAATTGAGCTTCTCGACAGAGGTCTTACAACTTTATAACAAGGCTGAGGACAGCATGGAGAAAGGCATGCTGATGTGGGAAGAAATGGAGGAGCAGCGCCTGAATGGACTCTCCAAAAGTGAAAAATACAGATCTGAGTTGCAAAAAATGGGATTGGAAAGACTATTTAGTGAGATTCCTGCTGATGAAGCTGCAGAGCTAGCTTCAAACATGAGATCACAGATATATCTTTTATGGGGAACCTTATTGTACGAGCGTTCTGTAGTGGAATATAAGATCGAACTACCAACTTGGGAGGAATGTTTGGAGGTAGCGGTGGAGAAGTTTGAACTCGCCGGTGCTTCCCAAACAGATATTGCAGTTATGATAAAGAATCATTGTTCCAATGAAACTGCACTGGAAGGTTTCGGCTTCAAAATCGACGAGATCGTACAGGCATGGAACGAAATGTATGATGCTAAAAGGTGGCAGTTTGGTGTTCCATCTTTCCGCCTCGAGCCTTTGTTTCGACGCCGGGCTCCAAAACTTCACTTCACTCTGGAGCATTTTTGA 2157 43.58 MGKPAGKKKENVGEKPGNANSKTARPSDRNSKAFDEDTAIFINMSQELKEEGNRLFQKRDHEGAMLKYEKALKLLPRNHIDVAQLHSNMAACYMQLGLGEYPRAINECNLALEAHPRYSKALLKRARCYEALNRFDLALRDVNTVLSLETNNLSALEILDSVKNTMREKGIDVDEKEIGLGIVKLPPAAHLRKVVREKLRKKKNKKVEEKTDDKLIVEEKVDQVIQVDHVEDKEVTKNTIEEDKLFVEPIEEKPVSKTVKLVLGEDIRWAQLPTNCTMKLVSEIVRDRFPSLKGVLVKYRDQEGDLVTITTTEELRSVESSSQLQSSLRLYITEVSPDQEPSYKEIENEEKLPEVDKRRNAVVVNGDSENDKEVIRGTTSVEDWIVQFARLFKNHVGVDSDSYLDLHELGMKLYSEAMEDSVTGDSAQELFEIAADKFQEMAALAFFNWGNVHMSRARKQVFFPEDSSRETLLLRIKDAYEWARKEYKKAEMRYEEALNVKPDFYEGFLALGQQQFEQAKLCWYNAIASGSKIDLELSFSTEVLQLYNKAEDSMEKGMLMWEEMEEQRLNGLSKSEKYRSELQKMGLERLFSEIPADEAAELASNMRSQIYLLWGTLLYERSVVEYKIELPTWEECLEVAVEKFELAGASQTDIAVMIKNHCSNETALEGFGFKIDEIVQAWNEMYDAKRWQFGVPSFRLEPLFRRRAPKLHFTLEHF 718
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28185193 28188772 - Lsi04G021020.1 Lsi04g02102 662151

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02102 718 Gene3D - 256 335 - -
Lsi04g02102 718 Pfam PB1 domain 258 333 IPR000270 GO:0005515
Lsi04g02102 718 ProSiteProfiles TPR repeat profile. 45 78 IPR019734 GO:0005515
Lsi04g02102 718 MobiDBLite consensus disorder prediction 1 15 - -
Lsi04g02102 718 Gene3D Tetratricopeptide repeat domain 40 178 IPR011990 GO:0005515
Lsi04g02102 718 Coils Coil 480 500 - -
Lsi04g02102 718 MobiDBLite consensus disorder prediction 1 33 - -
Lsi04g02102 718 ProSiteProfiles PB1 domain profile. 256 335 IPR000270 GO:0005515
Lsi04g02102 718 PANTHER PROTEIN CLMP1 1 718 IPR044517 -
Lsi04g02102 718 PANTHER PROTEIN PHOX4 1 718 - -
Lsi04g02102 718 SMART tpr_5 45 78 IPR019734 GO:0005515
Lsi04g02102 718 SMART tpr_5 83 118 IPR019734 GO:0005515
Lsi04g02102 718 SMART tpr_5 471 504 IPR019734 GO:0005515
Lsi04g02102 718 SMART tpr_5 119 152 IPR019734 GO:0005515
Lsi04g02102 718 SUPERFAMILY TPR-like 34 162 IPR011990 GO:0005515
Lsi04g02102 718 SUPERFAMILY CAD & PB1 domains 245 347 - -
Lsi04g02102 718 SMART PB1_new 256 335 IPR000270 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02102 - - - csv:101217917 1307.74
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01079 Lsi-Chr2:12041932 Lsi04g02102 Lsi-Chr4:28185193 2.40E-160 dispersed
Lsi04g02102 Lsi-Chr4:28185193 Lsi06g01071 Lsi-Chr6:20939482 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g554 . . . . . . . . . . Cma01g01489 . . . . . . . . . . . . . Cla05g01710 Cam05g1825 Cec05g1837 Cco05g1895 Clacu05g1810 Cmu05g1696 Cre05g1825 . . . . Lsi04g02102 . . . . . . Bda13g01251 . . . . Sed13g1998 Cmo01g01543 . . . . . . . Bhi09g02959 Tan01g3607 Cmetu07g2079 . Hepe01g1993 . . . . . . . . . . . . Cme07g00090
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006619 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02102 Lsi_Chr04 FPKM 6.191257 6.483161 1.32722 1.100034 3.215931 3.977434 3.003834 0.0 0.0 0.0