Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02115 ATCGTCAATTTCTTTCAACAAATCAAATCAACTTACATATGCTCCGGTGGTGGTTACGGCCGGAATCAGAATCGGAATCATATTCATCGTAACCGCCGCGGAATCTCTAGCGTGGCGGTAATGGCGGGAAATGATTGGGTGAACAGTTACTTGGAGGCGATACTTGACGTTGGGCCTCGACTTGACGATGCCAAAGCGTCGCTTCTGCTGAGGGAGAGAGGACACTTCAGTCCTACTCGTTACTTCGTTGAGGAGGTCATCACTGGCTTTGATGAGACCGATCTCTATCGACTATCGATCTTGGATTTGAGCTGCGGCTACGAAGAGTCCGCAGGAGAGGAACACGAGGCTGGAGAACATGTGCTGGAGGATTTGGAATTTGGCGCGAAAGAAGAAGCAGGTCTGCTTTCTACGTTTCTTCTTCGTATATTCTATACTTCAGTTACGATATGTACGATATCTCCTGATGTGGATTGGAGTTATGGTGAGGCTACAGAGATGCTTAATTCGAGGAACTGTGATGATTCCAAAGATGAGCATGGGGAGAGTAGTGGAGCTTATATTATCCGAGCCTCATTTGGGCCAAAGGACAAGTATATTCCAAAAGAACTTCTTTGGCCTCATATTCCAGAATTTGTTGATGGTGCTCTTAGCCATATAATCCAGATGTCCAAAGTTCTTGGTGAGCAAATTGGATGTGGGCAACCAGTTTGGCCTGTTGCTATACATGGACATTATGCAGATGCAGGTGACTCCGCAGCTCTTCTATCTGGAACTTTAAAAGTTCCATTGCTATTTACTGGTCACTCACTTGGGCGAGATAAGCTCGAACAACTTCTAAAACAAGGACGTCAAATGAGGGAAGAAATATACGAAACTTACAAAATAATGCGGGATGATAGAGGCAGAGGAGCTGATATTGAAGAGAAATGGCGCCTTTTGATGGTTTTGATCCAAGCGAAAGCTGCAAGCAAGATTAAAAAGAGGAGTCAGCTGTTATGGCATGTAATTCCTCCTGGAATGGAGTTTCATCATGTTATTCTACCAGATGCTGACATTGATGGGGAAGTTGAGAAAAATGGTGACGGTCATGCTTCTTCAGACCCACCGATGGGGGCTGAGTCAAATAAAATTATTGACAATGGTAATCTTGGGGACTTGAATGCAAGATTATGCTTCTTTTCCAATCCACGGAAGCCAATGATACTTGCACTTGCAAGGGCCAGACCCAAAGAAGAATATCACTACTTTAGTCAAAGCATTTGGAGAATGCCGTCCACTGAGGGAGTTCACAAACCTGATAGAAGTCCTAAGCTTGTAGTTTATTTTCCTTTTCTAATAATGGGAAACCGTGATGATATTGATGAAATGTCTGGCACAAATGCATCAGTTCGTTTATCGATTATTAAGCTGATTGACAAGAATGACTTGTACGGTCAAGTGGCATACCCTAAACATCACAGTCAGTATGATGTTCCCAACATCTATCGACTAGCAGCAAAAACAAAGTTAAATGAGGAACTCTCTCTCTCTCTGAATTTGCTGCAAGTTGAGCTTCCGTACTGGCTATTTAATATTGTGCATGATAATGGTCTGCTGGTTGACCCTCATGATCAGAAGTCCATTTCTGACGCTCTTTTAAAGCTTGATTCGGATAAGCAACTCTGGGCAAGGTTCAAACAGAATGGTCTAAAAAATATTCATCTTTTCTCCTGGCCAGAGCATTGCAAAACATATCTATCTCGAATAGTCAGCTGCAAACCAAGGCAGCCACAATGGCAAGGAGATGCTGATAGATTTGAAAACTTGAGGCCAGACTCACCTGGTGATTGTTTGCGAGATATACAGGATATATCTCTTAACTTAAAGTTTTCATTCGATGGTGAGAAGAATGAAGGGAGGACGACCTTGGAAAATGTTCTTGATTCTGAGGAGAATTCCTCAGATAATGTTATTCTGACGTTGTCAAAGGCTCTTTTAGATGGCATTCAAATGGTTGGCTCAACTGATAAAGTGGACCAGAATCCTGCAATTAGTAAATTTCCGGCTGTAAGAAGAAAAAAAACTATCTTTGTGGTGTCTGTGGATTCTGATTCATTCTCTGATTCACTTGAAGTCATGGAGTCGATTGTAGAAGCAGTAGGGAAGGACAGTAATGCAGGGTATATCAGTTTCACATTGTCAACATCGTTGAGCATAAATGAGGTATACTCTCAAATGAACATGGGAGGTTTCAGCCCTTCAAACTTTGATGCTTTCATCTGTAGCAGCGGAAGTGAGCTCTATTATCCGTATTCAAATTCCAATGACAACCCTTCAGGGCTTCCCTTTGTGATAGAAGTGGATTATCATTCACATATTGATTACCGCTGGGGTGGAGAAGTTCTGAGAAAAACGTTGGTTCATTGGGCTGCTTCCATCAATGAAAAGCAAGGGGAAGGCCGAATTGTTTTGGAAGATGAGTCAGGATCAACTTCACATTGTTTTGCATTCGAAGTGAGAGACCCGACAATGCTTCTTCCAGTTAAAGAGCTACGGAAATCGATGAGAATCCAGGCTCTTAGATGTTATTGTCTGTCATGCTCTATATTGTCACAATGGAAAGAAGCTGAATGTCATCCCTTTGTTGGCTTCAAGGTCCCAGGCTCTGAGGGTTTAACTTTCTTGCCTTGTGATTTCTGCCATTATCTCTCTGGTTTCTGTATATTGATGATATGTTTGTATCTCTACCTTCGATGGGGAATGGATTTGACGAAGGTGGTGGTGTTCGTGGGAGAATGTGGGGACACAGATTATGAAAGATTGATTGGAGGAGTTCACAAAACGGTGATATTGAAGGGGATCGGTTGCAATGCTAGCAAGCTTCATGCCAACAGAAGCTTTCCTATGGAACATGTTGTGCCATTCAGCAGCCCAAATGTTGTCCAAGCAGAAGGGTGCAAGATTGCTGACATAGGAACTGCATTGGGGAAGCTTGGTTTACTACACTATTTTGCTATTAGATCAGTCTCTGCAGCTCTTGTTGCACTGGAGAGAAAGACATCAATGCCTGATGGCAATGAAGTTGTGAGAGAGGCGCTCGAGCTGAGACTTGAGCATGTCGCTAAAGGAGAAACGGGACCTAGTAATTTGAGGCGT 3138 42.93 IVNFFQQIKSTYICSGGGYGRNQNRNHIHRNRRGISSVAVMAGNDWVNSYLEAILDVGPRLDDAKASLLLRERGHFSPTRYFVEEVITGFDETDLYRLSILDLSCGYEESAGEEHEAGEHVLEDLEFGAKEEAGLLSTFLLRIFYTSVTICTISPDVDWSYGEATEMLNSRNCDDSKDEHGESSGAYIIRASFGPKDKYIPKELLWPHIPEFVDGALSHIIQMSKVLGEQIGCGQPVWPVAIHGHYADAGDSAALLSGTLKVPLLFTGHSLGRDKLEQLLKQGRQMREEIYETYKIMRDDRGRGADIEEKWRLLMVLIQAKAASKIKKRSQLLWHVIPPGMEFHHVILPDADIDGEVEKNGDGHASSDPPMGAESNKIIDNGNLGDLNARLCFFSNPRKPMILALARARPKEEYHYFSQSIWRMPSTEGVHKPDRSPKLVVYFPFLIMGNRDDIDEMSGTNASVRLSIIKLIDKNDLYGQVAYPKHHSQYDVPNIYRLAAKTKLNEELSLSLNLLQVELPYWLFNIVHDNGLLVDPHDQKSISDALLKLDSDKQLWARFKQNGLKNIHLFSWPEHCKTYLSRIVSCKPRQPQWQGDADRFENLRPDSPGDCLRDIQDISLNLKFSFDGEKNEGRTTLENVLDSEENSSDNVILTLSKALLDGIQMVGSTDKVDQNPAISKFPAVRRKKTIFVVSVDSDSFSDSLEVMESIVEAVGKDSNAGYISFTLSTSLSINEVYSQMNMGGFSPSNFDAFICSSGSELYYPYSNSNDNPSGLPFVIEVDYHSHIDYRWGGEVLRKTLVHWAASINEKQGEGRIVLEDESGSTSHCFAFEVRDPTMLLPVKELRKSMRIQALRCYCLSCSILSQWKEAECHPFVGFKVPGSEGLTFLPCDFCHYLSGFCILMICLYLYLRWGMDLTKVVVFVGECGDTDYERLIGGVHKTVILKGIGCNASKLHANRSFPMEHVVPFSSPNVVQAEGCKIADIGTALGKLGLLHYFAIRSVSAALVALERKTSMPDGNEVVREALELRLEHVAKGETGPSNLRR 1046
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28286947 28292972 + Lsi04G021150.1 Lsi04g02115 662164

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02115 1046 PANTHER SUCROSE-PHOSPHATE SYNTHASE 3-RELATED 527 862 IPR044161 GO:0005986|GO:0046524
Lsi04g02115 1046 Gene3D Glycogen Phosphorylase B; 135 300 - -
Lsi04g02115 1046 Gene3D Glycogen Phosphorylase B; 572 582 - -
Lsi04g02115 1046 PANTHER SUCROSE-PHOSPHATE SYNTHASE 3-RELATED 41 98 IPR044161 GO:0005986|GO:0046524
Lsi04g02115 1046 PANTHER SUCROSE-PHOSPHATE SYNTHASE 3-RELATED 907 995 IPR044161 GO:0005986|GO:0046524
Lsi04g02115 1046 PANTHER SUCROSE-PHOSPHATE SYNTHASE 3-RELATED 152 503 IPR044161 GO:0005986|GO:0046524
Lsi04g02115 1046 Gene3D Glycogen Phosphorylase B; 528 571 - -
Lsi04g02115 1046 Gene3D Glycogen Phosphorylase B; 341 503 - -
Lsi04g02115 1046 PANTHER SUCROSE-PHOSPHATE SYNTHASE 2-RELATED 527 862 - -
Lsi04g02115 1046 PANTHER SUCROSE-PHOSPHATE SYNTHASE 2-RELATED 152 503 - -
Lsi04g02115 1046 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 151 581 - -
Lsi04g02115 1046 PANTHER SUCROSE-PHOSPHATE SYNTHASE 2-RELATED 41 98 - -
Lsi04g02115 1046 PANTHER SUCROSE-PHOSPHATE SYNTHASE 2-RELATED 907 995 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02115 K00696 E2.4.1.14; sucrose-phosphate synthase [EC:2.4.1.14] - jre:109002797 939.873
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02115 Lsi-Chr4:28286947 Lsi09g01115 Lsi-Chr9:17883804 1.37E-12 dispersed
Lsi04g02115 Lsi-Chr4:28286947 Lsi06g01012 Lsi-Chr6:20228188 1.23E-23 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g505 . . . . . . . . . . . . Car09g00390 . . . Cpe06g00326 . . . . . . . Cla05g01723 Cam05g1836 Cec05g1850 Cco05g1907 Clacu05g1823 Cmu05g1707 Cre05g1838 Cone4ag1773 Cone7ag1689 . . Lsi04g02115 . . . . . . . . . . . . . Cmo09g00451 Cma09g00441 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015999 0 0 0 0 0 1 0 1 1 0 1 1 0 0 0 0 1 1 0 1 0 0 0 0 0 1 0 0 0 0 9
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02115 Lsi_Chr04 FPKM 17.509615 18.405466 2.969472 2.497687 32.74688 36.546986 26.80563 0.430068 0.233658 0.477147