Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02116 ATGAAGAATGTTTGTTGGCCCTATTTTGATCCTGATTTTGATACTCTCCCTGAGAGGATAAATGGCCCAACTTGCAGGGTCTGCATAGACAATGAAAGCATGGAGGATTGCACCATTGTCAAGGTGGATAGCTTGAACAAACAAGGTCTCCTCCTTGAGGCCATTGGAACAACCAAAGGACCTGATAACTCTGCCAAAACCATAAGCTATGCTAACAAACTTCTGAAATCTGATAACTCTGGCGAGCATACGGCCATTGAAATGACCGGCACCGACCGGCCCGGTCTCTTCTCCGAGATATCTGCTGCATTGGCTGACCTACATTGCAATGTTGTGGAAGCTCATGCTTGGAGCCACAATGCTCGTTTGGCCTGCATTGCTTATATTTCGGACCAATCTACAGACAGTCCTATTGAGGATCCCCACCGGCTTGCCACCATTGAGGAGCATCTCTCCACCGTCCTCAGGGCAGCGACCGCCCCTCCGATCACCAGTTGGACGCATACCCTGCAACAAGAAGTGAAGATATCAGCCACCATAACAACCAATGTGGAGCGGCGGCTACACCAACTCTTGCTCTCGGTTAAGGATTATGATTGGACGTCTGAATCCATTTCAAAGAGACCCAAAAGCAATGAAGAGTGGAGGAAGACAACGGTGGGGATTGAAAGCTGTGATCAGAAAGGATACTCTATTGTCAGCATTGAGTGCAAGGATCGGCCGAGGCTTATGTTTGACACAGTTTGTACTCTTACTGATATGCAATATGTAATCTTCCATGCTTCCATTAGCTCCAAGGGAGGTTATGCTTTTCAGGAGTATTTTATCAGACATGTGAATGGGTACGCCTTGAATTCAGAGAATGACAAGCACAGGGTGGTAAAATGCTTAGAGGCAGCCATTGAACGTCGTGTTTGTGAGGGAGTGAGGCTGGAGTTATGTGCAAACAACAGGGTGGGATTGCTATCAGATATAACAAGGGTTCTGCGGGAAAATGGGCTGAATGTGGTGAGAGCAGACATAGCAACACAGGGAGAGAAGGCCATTAATGCATTTTATGTCAAAGACATTTCAGGTAAAGAAGTAGACATGGAGATGGTGGAGTCAGTGAAGAAGGAAATTGGCCCTGTTGTCCTTCGAGTCAAGAATGAGACGAGCCCTCCATCAACGCCTCAAATTACTAGGTCCCGTTTCTCCTTTAGCGACATGCTCAAGTCTCAGCTCGAGCGCCTCTCTCACAACTTCATTGCCATCAGGCATTGA 1263 47.27 MKNVCWPYFDPDFDTLPERINGPTCRVCIDNESMEDCTIVKVDSLNKQGLLLEAIGTTKGPDNSAKTISYANKLLKSDNSGEHTAIEMTGTDRPGLFSEISAALADLHCNVVEAHAWSHNARLACIAYISDQSTDSPIEDPHRLATIEEHLSTVLRAATAPPITSWTHTLQQEVKISATITTNVERRLHQLLLSVKDYDWTSESISKRPKSNEEWRKTTVGIESCDQKGYSIVSIECKDRPRLMFDTVCTLTDMQYVIFHASISSKGGYAFQEYFIRHVNGYALNSENDKHRVVKCLEAAIERRVCEGVRLELCANNRVGLLSDITRVLRENGLNVVRADIATQGEKAINAFYVKDISGKEVDMEMVESVKKEIGPVVLRVKNETSPPSTPQITRSRFSFSDMLKSQLERLSHNFIAIRH 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28292518 28295531 - Lsi04G021160.1 Lsi04g02116 662165

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02116 420 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR2 54 417 - -
Lsi04g02116 420 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR2 2 55 - -
Lsi04g02116 420 CDD ACT_ACR_3 230 304 - -
Lsi04g02116 420 ProSiteProfiles ACT domain profile. 310 388 IPR002912 -
Lsi04g02116 420 ProSiteProfiles ACT domain profile. 85 165 IPR002912 -
Lsi04g02116 420 CDD ACT_ACR_4 308 379 - -
Lsi04g02116 420 Gene3D - 309 384 - -
Lsi04g02116 420 SUPERFAMILY ACT-like 307 377 IPR045865 -
Lsi04g02116 420 SUPERFAMILY ACT-like 81 154 IPR045865 -
Lsi04g02116 420 Pfam ACT domain 310 356 IPR002912 -
Lsi04g02116 420 Pfam ACT domain 85 151 IPR002912 -
Lsi04g02116 420 CDD ACT_ACR_2 84 157 - -
Lsi04g02116 420 Gene3D - 81 159 - -
Lsi04g02116 420 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 54 417 IPR040217 -
Lsi04g02116 420 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 2 55 IPR040217 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02116 - - - csv:101219701 789.26
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02116 Lsi-Chr4:28292518 Lsi08g00911 Lsi-Chr8:17501515 1.77E-105 dispersed
Lsi04g02116 Lsi-Chr4:28292518 Lsi07g01356 Lsi-Chr7:19748867 8.73E-97 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g502 . Blo12g01071 . Bda03g00076 . . Bma04g00073 . . . Cma01g01514 . . . . . . . . . . . . . Cla05g01724 Cam05g1837 Cec05g1851 Cco05g1908 Clacu05g1824 Cmu05g1708 Cre05g1839 Cone4ag1777 . . . Lsi04g02116 Csa03g04320 Chy04g00380 . . . . . . Bpe04g00062 . . Sed13g2012 Cmo01g01567 . . . . . . Cpe02g00442 Bhi09g02223 Tan01g3625 Cmetu04g2629 . Hepe01g2008 Mch11g0544 . . . . . . . . . . . Cme04g00426
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011487 0 2 0 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02116 Lsi_Chr04 FPKM 15.829421 16.977743 2.922583 2.960713 10.859847 15.239621 12.945608 0.314459 0.18941 0.099779