Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02117 ATGAAGCAGAGTATATCTGAGGCAGTATCTTCATCATCCACCACGGGGTTATCGGAGCAGTCGCAATCGTCGTCGTCGTCGTCATCGTCGACGACGCCGTTGGAGAAGCCTCAATCGATATCGGCTGCAGCGGCGGCAGAGGATTTGGCCGTCGGGTCAAGGGATGGCGGCGGCGCGCAAGAAACGGTGACTGTCGATCGACGAGGGGACTTCTCCGCGGTGTGTAGATGGACAGTACAAAATTTTCCAAGAATCAAGGCTAGGGCTCTATGGAGCAAGTACTTTGAGGTTGGAGGTTACGATTGCCGTCTGTTGATATATCCAAAGGGGGATTCCCAAGCACTGCCGGGGTATATTTCAATCTACCTTCAAATCGTGGACCCGCGTGGCACATCATCTTCCAAATGGGATTGCTTCGCAAGCTACCGTCTGGCCATCGTCAACGTTCTCGATGATTCCAAGACCGTTCATCGGGATTCATGGCACCGTTTCTCGAGCAAGAAGAAGTCACACGGATGGTGCGATTTTACTCCCTCTTCCACCGTGTTTGATTCTAAGCTCGGTTATTTGTTTAATAATGAGTCTATTTTGATCACTGCTGATATTCTAATCCTCAATGAGTCTGTAAACTTTACCCGGGATAACAATGAGCCAGCCTCATCTATGATGATGGCATCCTCGGTTGTTGCTTGCCCTGCGCCCGAGGTGCTCAGTGGCAAGTTCACCTGGAAAGTTCATAATTTTAGTTTGTTTAAAGAGATGATAAAAACACAGAAAATAATGAGTCCCGTGTTCCCAGCTGGAGAGTGTAATTTGAGGATTAGTGTCTATCAGAGCTCAGTTAATGGGGCTGAGTATTTATCAATGTGTCTTGAGAGCAAGGATACCGAAAAGACAGTAATATTACCCGATAGGAGTTGTTGGTGTTTGTTTCGGATGTCCGTGTTAAACCAGAAGCCTGCTTTGAATCACATGCATCGAGACTCATATGGGAGATTTGCAGCTGATAATAAGAGTGGGGACAATACCAGTTTGGGGTGGAATGACTATATGAAGATGTCTGATTTTGTTGGGCAAGATTCTGGTTTTTTAGTTGATGATACCGCTGTGTTTAGTACCTCCTTTCATGTGATCAAGGAGTTTAGTAATTTTTCAAAGAATGGTGGATTAATTGGAGGTAGAAATGGAAGTGGAATTAGGAAATCAGATGGTCACATGGGGAAATTCACGTGGAGGATTGAGAACTTCACAAGGCTAAAGGACCTCTTGAAGAAGAGGAAAATTACAGGTCTTTGCATCAAGAGCAGGAGATTTCAGGTGGGGAACCGCGACTGTCGTCTCATTGTTTATCCTCGAGGGCAGTCTCAACCACCATGTCACCTTTCAGTCTTTCTTGAAGTTACGGATTCAAGAAATACTTCCAGTGATTGGAGTTGTTTTGTGAGTCATCGGTTGTCAGTAGTAAACCAGAAGATGGAAGAGAAATCTGTTACAAAGGAGTCTCAAAACCGGTACTCCAAAGCTGCAAAAGACTGGGGATGGCGTGAATTTGTCACACTTACCAGCCTCTTTGATCAGGATTCCGGGTTTCTTGTTCAGGATACTGTAATATTCTCAGCAGAGGTCCTTATATTAAAGGAGACATCTGTGATGCAGGATTTTATTGATCAAGACATGGAATCAACTGGTTCCAGCTCTCTGACGGATAAGGTAGCCAAAAAAAGTTCATTTACATGGAAGGTGGAGAACTTTTTGTCCTTCAAGGAAATAATGGAGACTCGTAAAATTTTTAGTAAATTCTTTCAAGCTGGTGGATGTGAGCTCCGTATTGGCGTCTATGAGTCCTTTGACACCATTTGCATCTATCTGGAGAGTGATCAGTCTGTTGGCTGTGATCCAGATAAAAACTTTTGGGTGTCAGATATGCTAGAGGCAGAAGCGGGGTTTCTTGTACGTGATACAGTTGTTTTCGTATGTGAAATATTGGATTGCTGCCCTTGGTTTGAGTTTTCAGATCTTGAGGTTTTGGCTTCAGAAGATGACCAGGATGCTTTGACTACTGATCCAGACGAACTCATTGACTCAGAAGATAGTGAAGGAATAAGTGGTGATGAAGAAGACATTTTTAGAAACCTTCTATCCACAGCTGGATTTCATCTAACATATGGAGATAATCCTTCACAACCACAAGTCACTTTGCGAGAAAAACTTTTAATGGATGCTGGTGCAATTGCAGGCTTTCTTACTGGACTTCGTGTTTATCTTGATGATCCTGCTAAAGTTAAGCGCTTACTTCTTCCTACTAAGCTATCCGGTAGCAATGATGGAAAGAAGGTCTCAAAGACAGATGAGTCGTCCCCCAGTTTAATGAATTTGCTGATGGGAGTCAAAGTATTACAGCAGGCAATTATTGATTTACTGTTGGATATAATGGTTGAGTGTTGCCAACCTTCAGAAGGGGGCTCTGGAGATCATTTGGAAGCAAATTCAAAGCCTTCTGTTCCTAGCAGTGGAGCCACTACCACACCACTGGAAGGTGAAATTGAAAATGCAGCAACAGAGGCTTCAGATTTTCCTCCACTTCAGAGATTGGATTCCGTTGAGGAAAGTAGTAGTGCTCCTGCTGTACAAAGCTCTGACATGATTAGAACTGATAGGCAGGGTAAGTCTCTACCTGAAGAGGTAATACATCCACCTGAAACATCTGCTGGGGTTTCAGAGAATGTCTTCCTTCGTACAAAGACCAAGTGGCCTGAGCAATCTGAGGAGCTTTTAGGCTTGATTGTAAATTCATTGAGAGCCCTAGATGGGGCTGTCCCTCGAGGATGTCCTGAGCCAAGAAGACGGCCTCAGTCTGCACAAAAGATTGCTCTTGTGCTGGATAAAGCTCCCAGACATCTACACTCTGACCTGGTTGCACTAGTACCTAAATTGGTCGAGCATTCAGAACATCCACTGGCTGCTGGTGTGCTTCTAGAACGGCTTCAGCAGCCTGGTGCTGAGCCAGCGCTGCGGATACCTGTTTTTGGTGCTCTTAGTCAATTGGAGTGTGGCACCGAAGTTTGGGAACAAGTTCTATTTAAATCTATTGAGTTTTTAGCAGATTCAAATGATGAGCCTCTTGCTGCAACTATAGATTTTGTTTTCAAAGCTGGAGCTCAGTGCCAACATCTCTCTGAAGCGGTGAGATCCGTGCGTGGTAGGCTGAAGAATTTGGGCATGGAGGTTTCACCATGTGTTCTTGATTTATTAAGTAAAACTGTAAATAGCTGGGGTGATGTTTCTGATATTATACTCAGAGATATTGATTGTGATGATGATGTTGACGATTTCTGCTCAAAAATATCATGTGAGCTTTTCTTATTTGGTGAACCTGGCCTTGCTTCAGAAAGTTTGCATCCGTTGGATGAACAGGATTTACATGCTGCTCGTCATTTTTCTGATATTTATATCTTGATTGAGATGTTATCAATACCTTGTCTTGCTGTTGAAGCATCGCAGACATTTGAGAGAGCTGTAGCTCGTGGTGCCATCACGGCTAAATCTGTTGCTGTGGTGTTGGAAAAACGTCTTGCTCAAAAAGCAAATAGCAACACTAGATTCGTAGCTGAAAGCTTCCAGCCTGGAGATTCTGTAATAGATGGAGAAACTAGTGAGCAGCTGAGAGTCCAGCGGGATGATTTTACTTCTATTGTTGGTCTTGCTGAAACATTAGCACTCTCTAGAGACCCTCGCGTTAGAGGATTTGTGAAAATGCTGTATCCATTATTGTTTAAGTGGTATGCAAGTGAGTCATATCGAGCCAGGATGCTAAAAAGATTGGTCGACCGTGTAACCAGCAGTGCAGACAATAACCGTGAAGTAGATATGGATTTGGAAATTCTGGTTATGTTGATTGGTGATGAACAAGAAATAATCAGGCCTGTGCTAAATATGATGCGAGATGTTGCAGAACTAGCAAATGTTGACCGTGCTGCTCTCTGGCACCAGTTATGTGCTACTGAACATGAAATCAGCCGTATCCGTGAAGAAAGCAAAGTAGAAATTTCAAATATGATGAAAGAAAAAACTGTTCTGTCACAAAAATTGAGTGAATCTGATGCTATGAACAATCGCCTTAAGGTATTTGGTTCTGGCTTGTCCATGTACATTGCTTATAAGTTAGATTCAGTTGCCTTTGGAATGATATATGGATGGCGAGATTTAATGAATCACAATGAGATGAAGGCTGAGATGGAGCGATTTTCTCGTGAGAAAAAGGAACTTTCTGAACAAATACATGACATTGAGAGTCAGCTTGAGTGGCTTCGCTCTGAGCGAGATGATGAGATTGTGAAGTTAACAGCAGAGAAGAAAGTTCTCCATGATCGTCTCCATGATGCTGAGACCCAAATTGCACAATTGAAATCCCGAAAACGCGACGAGATGAAGAAAGTAGTGAAGGAAAAAAATGCACTTGCTGAGAGATTGAAGAGTGCCGAAGCTGCTCGAAAAAGATTTGATGAACAATTGAAACGGTATGCAAATGAGAATATGACGAGGGAAGAAATCCGGCAGTCACTAGAAGATGAAGTTCGCAGGCTTACACAAACAGTTGGACAGACTGAAGGAGAAAAGAGGGAGAAGGAGGAGCAGATTGCTCGATGTGAAGCATATATTGATGGGATGGAAGCAAAATTGCAGGCCTGCCAGAGGTTACAAAATGGTTCAGAACAGCTTTGGAAATGGTTCTTATCTGGAAGAGAAGTGAGAGCTGGAGGTGGAGCAACCGAGGTTTCACTTGGTTTGGATGCGGTGGAAATAATATCTGGTCAGCAATATATCCATTCACTTGAAGCATCACTACAAGAGGAAATGTCAAGGCATGCCCCTCTGTATGGCGCTGGTTTGGAAGCTCTGTCAATGAAGGAGCTAGAGACATTATCCCGAATTCACGAAGAAGGATTAAGGCAAATTCATACTCTTCAGCAGCGCAAAGGGAGTCCGGCTGGCAGTCCTCTTGTGAGCCCCCATTCCCTCTCTCACAGTCATGGGTTGTACACTTCTGCACCGCCCCCGATGGCAGTCGGGATGCCTCCTTCACTCATTCCCAATGGCTCAGGGATCCACAGCAATGGGCATGTGAATGGTGGTGCAGTTGGACCATGGTTCAACCATGCTTGA 5163 43.95 MKQSISEAVSSSSTTGLSEQSQSSSSSSSSTTPLEKPQSISAAAAAEDLAVGSRDGGGAQETVTVDRRGDFSAVCRWTVQNFPRIKARALWSKYFEVGGYDCRLLIYPKGDSQALPGYISIYLQIVDPRGTSSSKWDCFASYRLAIVNVLDDSKTVHRDSWHRFSSKKKSHGWCDFTPSSTVFDSKLGYLFNNESILITADILILNESVNFTRDNNEPASSMMMASSVVACPAPEVLSGKFTWKVHNFSLFKEMIKTQKIMSPVFPAGECNLRISVYQSSVNGAEYLSMCLESKDTEKTVILPDRSCWCLFRMSVLNQKPALNHMHRDSYGRFAADNKSGDNTSLGWNDYMKMSDFVGQDSGFLVDDTAVFSTSFHVIKEFSNFSKNGGLIGGRNGSGIRKSDGHMGKFTWRIENFTRLKDLLKKRKITGLCIKSRRFQVGNRDCRLIVYPRGQSQPPCHLSVFLEVTDSRNTSSDWSCFVSHRLSVVNQKMEEKSVTKESQNRYSKAAKDWGWREFVTLTSLFDQDSGFLVQDTVIFSAEVLILKETSVMQDFIDQDMESTGSSSLTDKVAKKSSFTWKVENFLSFKEIMETRKIFSKFFQAGGCELRIGVYESFDTICIYLESDQSVGCDPDKNFWVSDMLEAEAGFLVRDTVVFVCEILDCCPWFEFSDLEVLASEDDQDALTTDPDELIDSEDSEGISGDEEDIFRNLLSTAGFHLTYGDNPSQPQVTLREKLLMDAGAIAGFLTGLRVYLDDPAKVKRLLLPTKLSGSNDGKKVSKTDESSPSLMNLLMGVKVLQQAIIDLLLDIMVECCQPSEGGSGDHLEANSKPSVPSSGATTTPLEGEIENAATEASDFPPLQRLDSVEESSSAPAVQSSDMIRTDRQGKSLPEEVIHPPETSAGVSENVFLRTKTKWPEQSEELLGLIVNSLRALDGAVPRGCPEPRRRPQSAQKIALVLDKAPRHLHSDLVALVPKLVEHSEHPLAAGVLLERLQQPGAEPALRIPVFGALSQLECGTEVWEQVLFKSIEFLADSNDEPLAATIDFVFKAGAQCQHLSEAVRSVRGRLKNLGMEVSPCVLDLLSKTVNSWGDVSDIILRDIDCDDDVDDFCSKISCELFLFGEPGLASESLHPLDEQDLHAARHFSDIYILIEMLSIPCLAVEASQTFERAVARGAITAKSVAVVLEKRLAQKANSNTRFVAESFQPGDSVIDGETSEQLRVQRDDFTSIVGLAETLALSRDPRVRGFVKMLYPLLFKWYASESYRARMLKRLVDRVTSSADNNREVDMDLEILVMLIGDEQEIIRPVLNMMRDVAELANVDRAALWHQLCATEHEISRIREESKVEISNMMKEKTVLSQKLSESDAMNNRLKVFGSGLSMYIAYKLDSVAFGMIYGWRDLMNHNEMKAEMERFSREKKELSEQIHDIESQLEWLRSERDDEIVKLTAEKKVLHDRLHDAETQIAQLKSRKRDEMKKVVKEKNALAERLKSAEAARKRFDEQLKRYANENMTREEIRQSLEDEVRRLTQTVGQTEGEKREKEEQIARCEAYIDGMEAKLQACQRLQNGSEQLWKWFLSGREVRAGGGATEVSLGLDAVEIISGQQYIHSLEASLQEEMSRHAPLYGAGLEALSMKELETLSRIHEEGLRQIHTLQQRKGSPAGSPLVSPHSLSHSHGLYTSAPPPMAVGMPPSLIPNGSGIHSNGHVNGGAVGPWFNHA 1720
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28297698 28309439 - Lsi04G021170.1 Lsi04g02117 662166

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02117 1720 PANTHER TRAF-LIKE FAMILY PROTEIN 639 1374 - -
Lsi04g02117 1720 ProSiteProfiles MATH/TRAF domain profile. 72 202 IPR002083 GO:0005515
Lsi04g02117 1720 MobiDBLite consensus disorder prediction 1 38 - -
Lsi04g02117 1720 PANTHER TRAF-LIKE FAMILY PROTEIN 639 1374 - -
Lsi04g02117 1720 MobiDBLite consensus disorder prediction 1655 1679 - -
Lsi04g02117 1720 CDD MATH 239 371 IPR002083 GO:0005515
Lsi04g02117 1720 CDD MATH 407 542 IPR002083 GO:0005515
Lsi04g02117 1720 MobiDBLite consensus disorder prediction 819 843 - -
Lsi04g02117 1720 Pfam MATH domain 437 544 IPR002083 GO:0005515
Lsi04g02117 1720 Pfam MATH domain 80 204 IPR002083 GO:0005515
Lsi04g02117 1720 MobiDBLite consensus disorder prediction 1 41 - -
Lsi04g02117 1720 SUPERFAMILY TRAF domain-like 73 210 - -
Lsi04g02117 1720 CDD MATH 76 202 IPR002083 GO:0005515
Lsi04g02117 1720 SMART math_3 243 356 IPR002083 GO:0005515
Lsi04g02117 1720 SMART math_3 411 523 IPR002083 GO:0005515
Lsi04g02117 1720 SMART math_3 74 182 IPR002083 GO:0005515
Lsi04g02117 1720 MobiDBLite consensus disorder prediction 1655 1685 - -
Lsi04g02117 1720 ProSiteProfiles MATH/TRAF domain profile. 238 375 IPR002083 GO:0005515
Lsi04g02117 1720 PANTHER TRAF-LIKE FAMILY PROTEIN 1405 1566 - -
Lsi04g02117 1720 PANTHER TRAF-LIKE FAMILY PROTEIN 1605 1719 - -
Lsi04g02117 1720 MobiDBLite consensus disorder prediction 829 843 - -
Lsi04g02117 1720 SUPERFAMILY TRAF domain-like 236 382 - -
Lsi04g02117 1720 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 561 640 IPR008974 GO:0005515
Lsi04g02117 1720 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 59 208 IPR008974 GO:0005515
Lsi04g02117 1720 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 234 382 IPR008974 GO:0005515
Lsi04g02117 1720 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 399 551 IPR008974 GO:0005515
Lsi04g02117 1720 PANTHER TRAF-LIKE FAMILY PROTEIN 32 639 - -
Lsi04g02117 1720 PANTHER TRAF-LIKE FAMILY PROTEIN 32 639 - -
Lsi04g02117 1720 MobiDBLite consensus disorder prediction 865 902 - -
Lsi04g02117 1720 Coils Coil 1405 1439 - -
Lsi04g02117 1720 MobiDBLite consensus disorder prediction 865 885 - -
Lsi04g02117 1720 ProSiteProfiles MATH/TRAF domain profile. 406 542 IPR002083 GO:0005515
Lsi04g02117 1720 SUPERFAMILY TRAF domain-like 407 548 - -
Lsi04g02117 1720 Coils Coil 1444 1559 - -
Lsi04g02117 1720 SUPERFAMILY TRAF domain-like 574 662 - -
Lsi04g02117 1720 CDD MATH 576 639 IPR002083 GO:0005515
Lsi04g02117 1720 PANTHER TRAF-LIKE FAMILY PROTEIN 1405 1566 - -
Lsi04g02117 1720 PANTHER TRAF-LIKE FAMILY PROTEIN 1605 1719 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02117 - - - csv:101209841 3003.77
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02117 Lsi-Chr4:28297698 Lsi10g00960 Lsi-Chr10:13947720 1.19E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g501 . . . Bda03g00075 . . Bma04g00072 . . . Cma01g01513 . Car09g00391 . . . Cpe06g00327 . . . . . . . Cla05g01725 Cam05g1838 Cec05g1852 Cco05g1909 Clacu05g1825 Cmu05g1709 Cre05g1840 . . Cone17ag1011 . Lsi04g02117 Csa03g04321 Chy04g00379 . . . . . . Bpe04g00061 . . Sed05g1711 Cmo01g01566 Cmo09g00453 Cma09g00443 . . . . Cpe02g00443 Bhi09g02224 Tan01g3626 Cmetu04g2170 . Hepe01g2009 Mch11g0545 . . . . . . . . . . . Cme04g00422
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007058 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 1 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02117 Lsi_Chr04 FPKM 34.101433 36.801926 10.310602 10.320936 23.374701 20.922211 20.596142 2.566825 2.953462 2.548127