Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02118 ATGGAGGAAGTTTGTCTTAATAGTGAGCCTATCTTTGATGAATGTGACGAATATGAGGTGGATGGTGATGGTTCCTTTGTGGACAACGAAGATGAATCTGGGGAAGCACAGTCAAAGAAGAATCCTCCACTGCCAACTGTGGGTTTGGAATTTAATTCTTTCGAAGAGGCATATGACTTTTATAATGTTTATGCTAAGGAACTGGGATTTGGCATCAGAGTCAGCAATTCATGGTTTCGATCTAAGAGAAAAGAACGATATAGAGCTAAACTTAGTTGCAGCAGTGCAGGATTCAAGAAAAAGAGTGAAGCCAATAATCCAAGGCCAGAAACCAGAACTGGTTGTCCTGCAATGATAATTATTAGGCTGATTGACATCAAAAGGTGGAGAATAGTTGAAGTTGAGCTTGAACACAACCATCCAGTGAGTCCTCAAATCACTCGATTTTACAAGTCACATAAAAAGATGATTCTTGCGGCAAAGAAAGCACAGCCACAGCTGCATCCCGTAACTGAAGTTCATACAATCAAGCTCTATAGAAGAACCATGCTTAACGGTTGTAATGGAAGCTCAAATGCTGACCAAAGGGAGGGTATCAGTTCTGTTGATCACTTGAAACACCTTGAACTTAAAGATGGGGATGGTCATGCATTGTATAATTATTTCTGCCGCATGAAATTGACAAATCCTAATTTTTTTTACTTGATGGATCTTGACAATGATGGGCATTTGAGGAATGTGTTTTGGGCAGATTCCCGGTCCAGGTCGGCGTATTGTTACTTTTGTGATACAATCACTATAGACACAACTTGCTTAACAAACAGATATGAAATTCCTCTGATTTCATTTGTTGGTGTGAACCACCATGGACAATCAGTGTTGCTAGGATGTGGTTTTGTTGGATTTGAATCAGTGGAGTATTTTGTTTGGATTTTGAATGCGTGGCTTAGGTGCATGCTGGGACGCTCTCCACAGGTCATTATTACTGACCAAAATAAAACATTGCTAGCTGCAGTCTCTGAAGTTTTCCCTAAAGCTTGTCACTGTTACTCTATGTGGTATATCATGCAAAGAATACCAGAAAAGTTGGGCGGACTGGAAGGATATGAAATTATAAGAAGCCAACTGAACCAAACCATTTTTAGCTCATTGAAGATAGCTGAATTTGAAACTTCATGGACTAATATGATCAAGCACAATGGGCTTGGAGATAACAAATGGCTCCAATCACTTTATGAAGATCGGACATTATGGGCTCCTGTATACTTAAAAGACATATTTTTTGCAGGACTGGTCCCTATCCGTGCAAATGAGAGCTTCAAAACCTTTTTTGATGGATATGTACATAAGCACACATCTTTTAAGGAATTTGTTGATAAGTATGATCTTGCCCTCCACAGGAAATACCATAAAGAAGCAGTAGCAGATCTGGAGTCAAGAAATTTAAGCGTTGGCTTGAAAACGAGATGTAATTTTGAGTTGCAGCTCTCCAAGGTGTACACAAAAGAAATGTTTAGCAAGTTCCAATCTGAGGTAGAAGGAATGTACTCTTGCTTCAACACAAGGCAGGTCAATGTAAATGGGCCTATAGTAACTTACATTGTCAAAGAAAGGATTGAAGTTGAGGGAAACGAGAAAGAGGTAAGATATTTTGAGGTATTGTATGAGACAACTGAAGTGGACATTCGGTGCATTTGCAGTTTGTTCAACTACAAAGGTTACCTTTGCAGGCATGCGTTAAATGTTCTTAATTATAATGGCGTGGAAGAAATCCCAGCTCGCTACATTCTGCCACGCTGGTGTAAAGATTTTAAGTGCAGGTATCTTTTAGGTCAGAGCTTAAGTAATACAAATGTGTATAGTTCAACATACCAATATAGTCATATTCTTAATTTTGCACTTCCAGTTGTAGAAGAAGGTGCACAATCTCAAGAACGTTATAAGCTTGCATTGCAAGGATTGGAGGAGTTGTTACATAAATTAAATCTTGTAGAGGATGATCTAAATAACGATGGATAA 2019 38.83 MEEVCLNSEPIFDECDEYEVDGDGSFVDNEDESGEAQSKKNPPLPTVGLEFNSFEEAYDFYNVYAKELGFGIRVSNSWFRSKRKERYRAKLSCSSAGFKKKSEANNPRPETRTGCPAMIIIRLIDIKRWRIVEVELEHNHPVSPQITRFYKSHKKMILAAKKAQPQLHPVTEVHTIKLYRRTMLNGCNGSSNADQREGISSVDHLKHLELKDGDGHALYNYFCRMKLTNPNFFYLMDLDNDGHLRNVFWADSRSRSAYCYFCDTITIDTTCLTNRYEIPLISFVGVNHHGQSVLLGCGFVGFESVEYFVWILNAWLRCMLGRSPQVIITDQNKTLLAAVSEVFPKACHCYSMWYIMQRIPEKLGGLEGYEIIRSQLNQTIFSSLKIAEFETSWTNMIKHNGLGDNKWLQSLYEDRTLWAPVYLKDIFFAGLVPIRANESFKTFFDGYVHKHTSFKEFVDKYDLALHRKYHKEAVADLESRNLSVGLKTRCNFELQLSKVYTKEMFSKFQSEVEGMYSCFNTRQVNVNGPIVTYIVKERIEVEGNEKEVRYFEVLYETTEVDIRCICSLFNYKGYLCRHALNVLNYNGVEEIPARYILPRWCKDFKCRYLLGQSLSNTNVYSSTYQYSHILNFALPVVEEGAQSQERYKLALQGLEELLHKLNLVEDDLNNDG 672
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28313085 28322013 + Lsi04G021180.1 Lsi04g02118 662167

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02118 672 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 20 666 IPR031052 GO:0006355
Lsi04g02118 672 MobiDBLite consensus disorder prediction 18 44 - -
Lsi04g02118 672 ProSiteProfiles Zinc finger SWIM-type profile. 551 587 IPR007527 GO:0008270
Lsi04g02118 672 Pfam MULE transposase domain 265 357 IPR018289 -
Lsi04g02118 672 PANTHER PROTEIN FAR1-RELATED SEQUENCE 6-LIKE ISOFORM X1 20 666 - -
Lsi04g02118 672 SMART 26again6 562 589 IPR006564 GO:0008270
Lsi04g02118 672 Coils Coil 651 671 - -
Lsi04g02118 672 Pfam FAR1 DNA-binding domain 59 143 IPR004330 -
Lsi04g02118 672 Pfam SWIM zinc finger 559 584 IPR007527 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02118 K17604 ZSWIM3; zinc finger SWIM domain-containing protein 3 - csv:105435026 1298.11
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02118 Lsi-Chr4:28313085 Lsi07g00419 Lsi-Chr7:4469550 0 dispersed
Lsi02g02701 Lsi-Chr2:33396539 Lsi04g02118 Lsi-Chr4:28313085 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g500 . Blo12g01072 . . . . . . . . Cma01g01512 . . . . . . . . . . . . . Cla05g01726 Cam05g1839 Cec05g1853 Cco05g1910 Clacu05g1827 Cmu05g1710 Cre05g1841 . Cone7ag1692 . . Lsi04g02118 Csa03g04322 Chy04g00378 . . . . . . . . . . Cmo01g01565 . . . . . . Cpe02g00444 . . . . . . . . . . . . . . . . . Cme04g00421
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000034 2 16 6 1 1 11 17 9 10 12 11 12 16 12 12 16 11 24 14 12 12 11 10 1 9 10 11 36 30 10 365
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25252 PF10551 MULE 5.60E-24 CL0219 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02118 Lsi_Chr04 FPKM 68.693672 71.44252 40.962826 41.969936 24.759382 23.75774 22.976105 53.998238 51.191265 46.811859