Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02120 ATGATGCAGAATCGAAGTCCGCCCAAACATAGACATGATGGAACATCGCCGTTGCCTCTTGGAATGGACTGGAGCCCTCCTCCTCGAAAATGGAATGGGAAGGACACAGTTTGGCCTCATGACCATCACACAGGATGGAGTTACTGTGTCATAATACCTTCATGGGTTGCCCTTCCTAAAACACGAGCTGCAGATCCCATAGTGGTTAAAAAGGCTTTTCCAAAGAAAATTATTCCTCCAGCTCCACCCAAAGGAATCTTACGGATGAAAACCAGGGCACTCTTAGAAGAGAGAAGGCGCTCTTTGGAGGAGTGGTTGACAAAGCTGCTGTCTGACATTGATATATCAAGGAGTGTTGCAGTAGCGTCTTTCCTTGAGCTAGAAGCTGCTGCTAGGTCTTCTTTCCAAAATGATAATCAGGGGCCTTCAGGTGAATACCCAGATTATAACAGCAAAATTTCGGCGCATCAATCCCCTCCTAATTCAAGCTCATCTACTGTTGCTGGTGGTTTGTCTCTTGCATCAGATTATGGTAGTGATACTGCTTATGAGGCCTCTGAACTTGGTACAGCAAGTCTGGGAAGAGATGATAATTCTGAAATTGCCATAGATGATTTAGCTCTGGATGATGATCTTTCCAGTCCAATTGAAAAACTTGTGAAGTATGGATTGTCCAATATTGATGAGGGACTATTTATGGGACAGACCATTCTAGAGCAGTTGGAAGGCCTTCCCAAACATAAAGCTCATCCTAGATATAATAACAATTTAAAGGATGGTCACAATGGCAATACTTCCAAGGCATCGCACTTGGATAAAAATGGACTAGTACCGTTTGCAGAGCCTGAGCATGGCAAGGTAATTGTCCATGCTCGCAAGCTGTCCGATGAGAGTGTAGCAAGTGATGTAAGTTCTCTGAGAGGTGGAGAGAGTTCAAGCTTTTCACTTCGGAATTCAGTAGGCAATGGCTCACTTGACCATTCAGGTGCCGAGGTTTCAAATGCAATTGAATTTCATAGCAACCCTGAATTGCATTTTTCACACGATGCACTCCTCTTCCCAAAGGATCATCGGCATAAAATGAATAGGGTTCTTTCAACAATGCATCAAAGGCTAGTGACAGCAAAAACAGACATGGAGGACCTTATATCAAGATTGAATCAGGAAATAACCGTGAAAGATTACCTTGCAACAATGGTTAAGGATTTGGAAGTAGATCTCGAAACAAACAAGCAGAAAAGTAAAGAAAACCTTCAACAAGCTATTTTGATGGAGAGGGAAAAAGTTACCCAAATGCAGTGGGAAATGGAGGAACTTCGTCACAAATCATTGGAAATGGAGTTAAAATTGAAGTCTAAAGAGGGTGAAAATTCATTTTCAGTGCCTACGAAAGAATTTACCCACCAGGAGAAAGTTGCCTTGCAAGAAGAGCTTGAATCCACGAAAGAGCAACTAAAGAATGCTTCTAAGCAATTTGAAGAGCTTGAGGGAAAATCAAAAGCAGACATAAGGGTTCTTGTTAAAGAGGTCAAATCTCTTCGAAGTACCCAAGCCAAACTTAAACAAGAGCTTAGTCAAACTCTTCAACAGAAGTCTGAGACTGAGGCAAATCTTCTGTCCAATGGCAAACAAACTGCTACTTCAATGGCTGATGACGACTTTCAGGATGGCGACAACGATTCGATTAACGTAGAAGCAGAGTTGAGGATGCTACTTAAAGATATGTTCACCGAAAACGCTAGGTTGAGGAAACAGGTCAATTCTTATTTCCGGCATAGTATGAGATTGAAGATGTCAATGGAAGCTGATGGTTCAGAGGCTTCTTCTTCTTCTTCACAAAATACTAAAATTCACGCTCCTCGAAATACATTACTCAAGGGTTTTGAATCCTCGTCGGGGCTGAGGTCTTCTGCAACTGAGGGTTTTCGACAATATGAAGATGAGCCAGCAGAACCCGAGATTGAGGAAGGTGCTGAAGAAGAATTGGATACTACTAACAATGATGATGTTCCTGGTGAACCTGTTGAAGCTGAGGAAAAGGAAGATGAAGAACCTGTTGAAAGAGTGCGTAAAACGTCAAAATTTATGACTAAGTATGAACGTGCTAGAATTTTGGGTACACGTGCCCTCCAAATCAGCATGAATGCTCCTGTGATGGTCGAGCTGGAGGGTGAGACTGATCCACTTGAGATTGCAATGAAGGAACTTCGTGAGCGGAAGATACCCTTCACCATTCGTCGCTACCTGCCAGATGGAAGTTATGAAGACTGGGGCGTTGATGAACTGATTGTGGAGGATTCTTGGAAGAGGCAAGTTGGTGGCGCTTGA 2328 42.91 MMQNRSPPKHRHDGTSPLPLGMDWSPPPRKWNGKDTVWPHDHHTGWSYCVIIPSWVALPKTRAADPIVVKKAFPKKIIPPAPPKGILRMKTRALLEERRRSLEEWLTKLLSDIDISRSVAVASFLELEAAARSSFQNDNQGPSGEYPDYNSKISAHQSPPNSSSSTVAGGLSLASDYGSDTAYEASELGTASLGRDDNSEIAIDDLALDDDLSSPIEKLVKYGLSNIDEGLFMGQTILEQLEGLPKHKAHPRYNNNLKDGHNGNTSKASHLDKNGLVPFAEPEHGKVIVHARKLSDESVASDVSSLRGGESSSFSLRNSVGNGSLDHSGAEVSNAIEFHSNPELHFSHDALLFPKDHRHKMNRVLSTMHQRLVTAKTDMEDLISRLNQEITVKDYLATMVKDLEVDLETNKQKSKENLQQAILMEREKVTQMQWEMEELRHKSLEMELKLKSKEGENSFSVPTKEFTHQEKVALQEELESTKEQLKNASKQFEELEGKSKADIRVLVKEVKSLRSTQAKLKQELSQTLQQKSETEANLLSNGKQTATSMADDDFQDGDNDSINVEAELRMLLKDMFTENARLRKQVNSYFRHSMRLKMSMEADGSEASSSSSQNTKIHAPRNTLLKGFESSSGLRSSATEGFRQYEDEPAEPEIEEGAEEELDTTNNDDVPGEPVEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA 775
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28335196 28346784 + Lsi04G021200.1 Lsi04g02120 662169

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02120 775 Gene3D - 68 139 IPR036871 GO:0035091
Lsi04g02120 775 ProSiteProfiles PX domain profile. 1 132 IPR001683 GO:0035091
Lsi04g02120 775 Coils Coil 503 537 - -
Lsi04g02120 775 Pfam RNA polymerase Rpb6 692 743 IPR006110 GO:0003677|GO:0003899|GO:0006351
Lsi04g02120 775 SMART RNA_pol_Rpb6_2 690 743 IPR006110 GO:0003677|GO:0003899|GO:0006351
Lsi04g02120 775 Pfam PX domain 71 126 IPR001683 GO:0035091
Lsi04g02120 775 Coils Coil 464 498 - -
Lsi04g02120 775 PANTHER PX DOMAIN-CONTAINING PROTEIN EREL1-RELATED 2 68 IPR044588 GO:0015031
Lsi04g02120 775 PANTHER PX DOMAIN-CONTAINING PROTEIN EREL1-RELATED 535 613 IPR044588 GO:0015031
Lsi04g02120 775 MobiDBLite consensus disorder prediction 649 682 - -
Lsi04g02120 775 SUPERFAMILY RPB6/omega subunit-like 646 765 IPR036161 GO:0003677|GO:0003899|GO:0006351
Lsi04g02120 775 Coils Coil 436 456 - -
Lsi04g02120 775 Hamap DNA-directed RNA polymerase subunit Rpo6 [rpo6]. 694 749 IPR006111 GO:0003677|GO:0003899|GO:0006351
Lsi04g02120 775 PANTHER PX DOMAIN-CONTAINING PROTEIN EREL1-RELATED 69 546 IPR044588 GO:0015031
Lsi04g02120 775 SUPERFAMILY PX domain 70 128 IPR036871 GO:0035091
Lsi04g02120 775 MobiDBLite consensus disorder prediction 254 276 - -
Lsi04g02120 775 MobiDBLite consensus disorder prediction 1 25 - -
Lsi04g02120 775 MobiDBLite consensus disorder prediction 602 691 - -
Lsi04g02120 775 PANTHER PX DOMAIN-CONTAINING PROTEIN EREL1-RELATED 2 68 - -
Lsi04g02120 775 PANTHER PX DOMAIN-CONTAINING PROTEIN EREL1-RELATED 535 613 - -
Lsi04g02120 775 PANTHER PX DOMAIN-CONTAINING PROTEIN EREL1-RELATED 69 546 - -
Lsi04g02120 775 MobiDBLite consensus disorder prediction 134 169 - -
Lsi04g02120 775 Gene3D - 639 766 IPR036161 GO:0003677|GO:0003899|GO:0006351
Lsi04g02120 775 SMART PX_2 29 128 IPR001683 GO:0035091
Lsi04g02120 775 MobiDBLite consensus disorder prediction 603 639 - -
Lsi04g02120 775 MobiDBLite consensus disorder prediction 257 271 - -
Lsi04g02120 775 ProSitePatterns RNA polymerases K / 14 to 18 Kd subunits signature. 697 711 IPR020708 GO:0003677|GO:0003899|GO:0006351
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02120 - - - bhj:120085923 987.638
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01256 Lsi-Chr5:20328665 Lsi04g02120 Lsi-Chr4:28335196 1.19E-85 transposed
Lsi02g02704 Lsi-Chr2:33407983 Lsi04g02120 Lsi-Chr4:28335196 2.39E-10 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g498 . . . . . . . . . . Cma01g01508 . Car09g00394 . . . Cpe06g00330 . . . . . . . Cla05g01730 Cam05g1843 Cec05g1855 Cco05g1915 Clacu05g1831 Cmu05g1714 Cre05g1845 . Cone7ag1693 Cone17ag1014 Cone20ag0354 Lsi04g02120 Csa03g04325 Chy04g00375 . Blo17g00016 . . Bda13g01255 Bpe14g00585 . . Bma02g00020 Sed05g1708 Cmo01g01563 Cmo09g00456 Cma09g00449 . . . . Cpe02g00446 Bhi09g02227 Tan01g3629 Cmetu04g2606 . Hepe01g2012 Mch11g0548 . . . . . . . . . . . Cme04g00418
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006027 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02120 Lsi_Chr04 FPKM 0.0 0.829028 19.965504 21.262407 64.07061 60.180492 63.347248 4.046815 4.507291 3.605109