Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02121 ATGGCGTCTCCGGCGGTTACTCATCTCAATATCTACCCCTCTTCCTCTCTCGGCCATTCCAAGAGGTCATCTCTGAGGCTCAGTAGGAATCAGACAAAATTTATTTCTAGCACAACTCGGGAGAGAAGATCTCATTCCCTGAAGGTTGTCCAGTCAGTTCTGAATAACTGCAAGTCAAATTTAAACGATAATGGAGCAAGTGAAGAAGCAAAACTGCTTCTGGACAGATTGTATGCCCAGACACAGAGATTGGAAGAACATGTAAGCAAAGATCCTCACTTCCCACAAGATGTTTGGCTAGGGCTCAGTCTTGAAAATCTCGAGTCCGATCTCCAGGCTGCACTGGCAGTATTGAAAAAGAAGGAAGAAGATCTACAAGATGCTGAAAGAACGATTCTATTAGAACGAAGCCAATTAAACAATGCAAGGGAGAAGTTGGAGAAGCAGGAGGAAGAAATTACTGCTGCTTATCGTAAACAGCAAGAATTAGAAGATGAGCTTAAGCAGGCAAATCTAAACTTAGCTTCTCAAGCTAGACAGATTGATGAATTAAAACTTCAAATTAGGGAGAAAGACGAGGGGATTGCTGCAGTTGAATCTTCCCTTACTTCGAAAGAAGATGAGTTGAAGAGAATGAGAGCTGATTTGGCTAAGAAGAGTGAGGAAGCTGTTAAGACAGATTTTGAACTTAAATCTAAGTCCCAGTTTCTGACTGAAGCCAACGAAGTAGTGAAAAGACAAGAAGTCGAGCTACAAATGCTTAAAAAGGCTGTCCTAGAGAAAGAAAAAGAACTGGAACTTTCTGTAAAGCTGCAGAAACTTGAAGAGGAGAAACTGGAAGTCATAGAGAAGAATCTGGAGAAGAGAACCATGGAATGGTTGTTAGCACAGGAAGAATTGAAAAAATTGAGAAAGGAGGCATCTAAGAAAGCAGCAGAGATGAATAAAACCGTGAATGACTTCAACCGAGTGAAGAAGCTTCTTGCCGATGTAAAAAGTGAGTTGGTTTCCTCTCAAAAGTCTCTTGTGTCATCCAAAAAGAAAATAGAAGAACAAGAAGATATTCTTGAGAGGCAAATGGCAGAACTTGAAGAACAAAAGAAGGGTATTAATGCATATATGTCAAGTTTAAAAGATGCTCAAATTGAAGTAGAGAGTGAGAGAGTGAAGCTTAGAGTCGCCGAGGCCCATAACAAGGAGCTTGAATGTGACTTGTTGATGGAAAAGGAGCTCACTGATGAGTTACAGCAACAACTGAAGAAAGAGAAATCCCATCTCCAACAGGCAACTGAGGAGAAGTCACTTCTACAGAAGGAGCTAGAGCATAAAAATATCGAGTTTGAGAAAACTCACAATCTTCTTCAAGATAAAGCATCGGAGTTGGTTGAGGCCAAGTTAGAAATCCAGCATTTGAAATCCGAACAGGTTTCTCTTCAACTTCTTTTGAAGGAGAAAGATTTGGAAATACTTGATGCACAAAAGAAAATTGAGGAATTAAACCAGGAAATTATTGAGCTACAATCGCTTATGAGTACTAAAGAGGCCCAGCTCAGTCAGACGACTGCTATGCTGAAAGAGAAAGATGAATGCGTTCAGATAATGCAGAACGAACTAAACGATACAAAGCTGAAAATTTCCGAAGCTGAAGCAGCAGTAGAACACATTGTGGATCTCACAAATAAATTGGTAATCTCCATCAAAGATGGCGACGACGACATTTTGAAATTGAACGATGACCTTAGCCTCAATCTACCGCAGCAGTTATTCAAAAAACCTACTGATAACATCAGACTACAAAAGAAACAACTCGAAACTGAGCTAGAGCTCACCAAGGAAAGCTTGAGACAAAAAGAAATGGAAATTCTAGCTGCAGAAAGGGCCCTGACCGTTAAAGATGAGGAACTAAAAACGGTTCTGGAAAGATTAGATACAAAGGAGAAAGAATTTGAGAAGATGAAGGAAGAGATGGATGAAGAAGCTAAGGATCTGAGGAAGCTAAACACTTTTGCAGAAGACGGTGTTGGAGGAGAGGACTTGGCAATTGAAAGGCTTCAAGTTGAAGCTGCTCAGTTAGAGGTCGAAGCAGCTACTAGCGCTCTTAAGCAACTCACAGAGATGAGTCGAGAGCTTCTGAATAAAGCTGGCCACAGCCTCGAGGTTGATATCGATTCAAAAGGCAACCACATTCGACACGACGATGACAATGTCTATGCCAGAATAGGCGGTGGGGTCGATAATAATAACCCAAGATTCAATGAAGTGAAGCTGGAAGTTTCCCGCCTTTCATCTCTAACTGAACAGCTTTTGAAGGAAGCTGGTTTATTTGTTGATGGGGGATTAGTGGGATGA 2349 41.08 MASPAVTHLNIYPSSSLGHSKRSSLRLSRNQTKFISSTTRERRSHSLKVVQSVLNNCKSNLNDNGASEEAKLLLDRLYAQTQRLEEHVSKDPHFPQDVWLGLSLENLESDLQAALAVLKKKEEDLQDAERTILLERSQLNNAREKLEKQEEEITAAYRKQQELEDELKQANLNLASQARQIDELKLQIREKDEGIAAVESSLTSKEDELKRMRADLAKKSEEAVKTDFELKSKSQFLTEANEVVKRQEVELQMLKKAVLEKEKELELSVKLQKLEEEKLEVIEKNLEKRTMEWLLAQEELKKLRKEASKKAAEMNKTVNDFNRVKKLLADVKSELVSSQKSLVSSKKKIEEQEDILERQMAELEEQKKGINAYMSSLKDAQIEVESERVKLRVAEAHNKELECDLLMEKELTDELQQQLKKEKSHLQQATEEKSLLQKELEHKNIEFEKTHNLLQDKASELVEAKLEIQHLKSEQVSLQLLLKEKDLEILDAQKKIEELNQEIIELQSLMSTKEAQLSQTTAMLKEKDECVQIMQNELNDTKLKISEAEAAVEHIVDLTNKLVISIKDGDDDILKLNDDLSLNLPQQLFKKPTDNIRLQKKQLETELELTKESLRQKEMEILAAERALTVKDEELKTVLERLDTKEKEFEKMKEEMDEEAKDLRKLNTFAEDGVGGEDLAIERLQVEAAQLEVEAATSALKQLTEMSRELLNKAGHSLEVDIDSKGNHIRHDDDNVYARIGGGVDNNNPRFNEVKLEVSRLSSLTEQLLKEAGLFVDGGLVG 782
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28348608 28352457 + Lsi04G021210.1 Lsi04g02121 662170

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02121 782 Coils Coil 482 516 - -
Lsi04g02121 782 Coils Coil 104 187 - -
Lsi04g02121 782 Coils Coil 237 264 - -
Lsi04g02121 782 Coils Coil 342 446 - -
Lsi04g02121 782 Coils Coil 635 666 - -
Lsi04g02121 782 Coils Coil 454 474 - -
Lsi04g02121 782 PANTHER SYNAPTONEMAL COMPLEX PROTEIN-RELATED 33 773 - -
Lsi04g02121 782 PANTHER MYOSIN HEAVY CHAIN-RELATED PROTEIN 33 773 - -
Lsi04g02121 782 Coils Coil 195 222 - -
Lsi04g02121 782 Coils Coil 681 713 - -
Lsi04g02121 782 Coils Coil 531 551 - -
Lsi04g02121 782 Coils Coil 593 627 - -
Lsi04g02121 782 Coils Coil 297 320 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02121 - - - bhj:120086075 1162.52
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g496 Blo01g01392 . . . . Bpe02g00557 . . . . Cma01g01507 . Car09g00395 . . . Cpe06g00331 . . . . . . . Cla05g01731 Cam05g1844 Cec05g1856 Cco05g1916 Clacu05g1832 Cmu05g1715 Cre05g1846 Cone4ag1779 Cone7ag1694 . . Lsi04g02121 Csa03g04327 Chy04g00374 . . . . . . . . . Sed05g1707 Cmo01g01562 Cmo09g00457 Cma09g00450 . . . . Cpe02g00447 Bhi09g02230 Tan01g3630 Cmetu04g2943 . Hepe01g2013 Mch11g0550 . . . . . . . . . . . Cme04g00416
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010102 0 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02121 Lsi_Chr04 FPKM 22.838743 28.063236 30.750641 29.009001 26.445633 26.197428 22.708065 13.60181 13.591427 13.28493