Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02122 ATGGCTACGCAAGAAGCTGCTTCTCAAGCGGTTCCTTCTTTTGAGTATGAGCTTCTTGATGATGATCCTGATCATGTCAGGACAGTGGTTGCTTCATCAAACTATGCAAGCCCTAGGATTGAACCTTCAAAAGTGAAGCTTAGGCATCGAATTGGGCGGGGCGTTTTTGGTGATGTTTGGTTAGCAACTCACCATCAGTCCACTAAGGATTATGATGAGTACCATGAAGTAGCAGTCAAGATGTTGAATCCTGTTAAAGAAGACTATATGAGGATTGTTTTGGATAAACTTGAGGATCATTTTTATAAGTGTCAAGGTGCAAAGGGTGTTTGTAGGCTGTATGGAGTGTCTATAATTGGTGGGAAGTTATGCATCATCATGAAATTCTATGAAGGATCAGTTGCTGATAAAATGGCTCGCCTTAAAGATGGAAAGCTTTCTCTCCCTGATGTATTGAGATATGGAATCAATCTAGCCAAGGGGATTGTGGAATTGCACTCAAAAGAGATCTTGGTTCTTAACCTGAAACCTTCAAACATGCTCCTTACCACTAAGGACCAAGCAATTTTGGGAGATGTTGGAATTCCTTTTCTACTGCACGGTGTACCAATACCGAATACGGATATAATTCAGAGACTTGGGACACCTAACTATATGGCACCGGAACAATGGCAGCCAGAAGTTAGAGGTCCGATATCGTATGAAACTGATTCGTGGGGGTTTGCCTGCTGCATGATTGAGATGTTGACTGGTGTCCAGCCATGGCGTGGGAAATCAGTTGATGAAATATTTCATTCTGTTGTCAGTAAACAAGAAAAGCCATGTATTCCAAGTGGACTTCCTCCTATAATTGAGAATGTTCTTCTCGGTTGCTTTGACTCTCAACATGTTAATAGTGATTGGCAAGCCATTGGGATTTCAAAAGTGTTGAACAAATCGAGTGCCATTGGGCATACTGAATGGTTTCTCTCAAAGGATCACTTGCAAGAGAATGACTTAGTGCGTTCTAGAAAGCCATTAAACTCATGCAAGTCAGATAATATGAACATCCCTGAAGGAAAGATAGTGGGTTTGGAACGCGAAACTGAAAAGGATGCTTTTGTTTTGGTGAGGGTTCGTGGAATCCATGATCCCGTAAGAGTGTATGCTTCGACACTCGAGCGGGTCAGTTTCGGGTTAGCAGCTGGTGACTGGATTCGTTTGAAGGAAGCAGACAAGAAACACTCTCCAGTGGGAATTCTTCATTCAATCGATCGTGTTGGCAATGTAGCTGTTGCTTTTATTGGTGAAGAAACTCTCTGGAAGGGTAACTCTTCCCAGTTTCAGATGGCAGAATCATTTTGCGTTGGCCAATTTGTACGGATAAAAGCCAGCATTCTGAGACCACGATTCAAATGGCCTTGTAGAAAAGGAAGTGTTTGGGCTACAGGGAGGATTTGGTGGATCCTACCCAATGGATGCCTCATGGTCAAGTTCCCTGGAATCCTCTCTTTCAAAGAAGAATGTGATTCGTATATGGCCGATCCAGCCGAGGTCGAGGCAGTCAACTTTAGCACTTGTCCAGGGGTGGTGAAAAAGTACCAACATCTTGAGGATTTTCACTGGTCAGTTAGACCAGTTCTGATTGCATTTGGGATGTTTACAGCAATGAAGCTGGGAATTGCATTTGGGAAGAAGGTGGGGAGATCAAAGGTGAAGAAGGGGCAAGGCAGCAATATTGTGTATTGTGAATCTCAACATATTGAAGGACAGAACGCCAACAATCCAGCTTGGATTCCTCCGCCTGTGAAAAACATTCTTTTCGGAGACTGCGTTAACACGGTCGCTCGATGA 1833 43.43 MATQEAASQAVPSFEYELLDDDPDHVRTVVASSNYASPRIEPSKVKLRHRIGRGVFGDVWLATHHQSTKDYDEYHEVAVKMLNPVKEDYMRIVLDKLEDHFYKCQGAKGVCRLYGVSIIGGKLCIIMKFYEGSVADKMARLKDGKLSLPDVLRYGINLAKGIVELHSKEILVLNLKPSNMLLTTKDQAILGDVGIPFLLHGVPIPNTDIIQRLGTPNYMAPEQWQPEVRGPISYETDSWGFACCMIEMLTGVQPWRGKSVDEIFHSVVSKQEKPCIPSGLPPIIENVLLGCFDSQHVNSDWQAIGISKVLNKSSAIGHTEWFLSKDHLQENDLVRSRKPLNSCKSDNMNIPEGKIVGLERETEKDAFVLVRVRGIHDPVRVYASTLERVSFGLAAGDWIRLKEADKKHSPVGILHSIDRVGNVAVAFIGEETLWKGNSSQFQMAESFCVGQFVRIKASILRPRFKWPCRKGSVWATGRIWWILPNGCLMVKFPGILSFKEECDSYMADPAEVEAVNFSTCPGVVKKYQHLEDFHWSVRPVLIAFGMFTAMKLGIAFGKKVGRSKVKKGQGSNIVYCESQHIEGQNANNPAWIPPPVKNILFGDCVNTVAR 610
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28353513 28357353 - Lsi04G021220.1 Lsi04g02122 662171

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02122 610 ProSitePatterns Protein kinases ATP-binding region signature. 51 80 IPR017441 GO:0005524
Lsi04g02122 610 Gene3D Transferase(Phosphotransferase) domain 1 131 315 - -
Lsi04g02122 610 SUPERFAMILY Protein kinase-like (PK-like) 44 293 IPR011009 -
Lsi04g02122 610 Gene3D Phosphorylase Kinase; domain 1 15 130 - -
Lsi04g02122 610 ProSiteProfiles Protein kinase domain profile. 45 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g02122 610 PANTHER OS06G0639500 PROTEIN 1 607 - -
Lsi04g02122 610 Pfam Protein tyrosine and serine/threonine kinase 46 295 IPR001245 GO:0004672|GO:0006468
Lsi04g02122 610 PANTHER OS06G0639500 PROTEIN 1 607 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02122 - - - csv:101208616 1153.66
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02122 Lsi-Chr4:28353513 Lsi10g01097 Lsi-Chr10:15228376 5.34E-06 dispersed
Lsi04g02122 Lsi-Chr4:28353513 Lsi07g01075 Lsi-Chr7:16102866 5.24E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g495 . Blo12g01073 . Bda03g00074 . . Bma04g00070 . . . . . Car09g00396 . . . Cpe06g00332 . . . . . . . Cla05g01732 Cam05g1845 Cec05g1857 Cco05g1917 Clacu05g1833 Cmu05g1716 Cre05g1847 . . Cone17ag1016 . Lsi04g02122 Csa03g04328 Chy04g00373 . . . . . . Bpe04g00059 . . Sed13g2018 . Cmo09g00458 Cma09g00451 . . . . . Bhi09g02231 Tan01g3632 Cmetu04g2456 . Hepe01g2014 . . . . . . . . . . . . Cme04g00415
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005420 2 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 2 4 2 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83608 PF07714 PK_Tyr_Ser-Thr 1.50E-26 CL0016 Lsi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02122 Lsi_Chr04 FPKM 32.7658 30.40645 27.389364 28.594236 7.295538 8.211648 7.856749 144.921585 153.843658 153.989975