Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02125 ATGGCGCCTAGTACGATCCGGAAGGCGATTGGAGCCGTGAAGGACCAGACGAGTATTGGAATTGCGAAGGTTGCGAGTAATATGGCGCCGGACCTTGAGGTAGCGATCGTGAAGGCGACGAGCCATGACGATGATCCGGCCAGTGAGAAGTACATCAGGGAGATTTTGAGCCTCACATCGTATTCTCGTGGATATGTGAGTGCGTGTGTGTCGGCGATTTCGAAGCGTCTGGCCAAGACGAGGGACTGGATTGTGGCGCTCAAGGCACTCATACTTGTGCACAGGTTGTTGAATGAAGGGGACCCGGTGTTTCAGGAGGAGATCTTGTATGCTACTAGAAGGGGCACGAGGCTGTTGAATATGTCCGATTTTAAGGATGAAGCTCATTCGAGCTCGTGGGATCACTCGGCTTTTGTTCGAACTTATGCATTCTACTTGGATCAACGGCTGGAATTGATGTTGTTTGAGAAGAAAGGTGGTAGTGCAAGGGGAAATTCCCGTGGAGATGATAGATTTGATGGAAGAGATGACTTTAGATCTCCGCCCCCAAGGCCCTACGATAATGGTTATGGCGAGTATAGAGGAGAAAGAGAGTATGGGAATTATGGTGGGATGAGGAGGTCGAGATCTTATGGTGATGTGGGGGAATCTGTGGGGAGGGATGGGGAAGGGCAGGGTCGTAACAACAAGGGGCCTGTGACCCCATTGAGGGAAATGACGATCGAGAGAGTTTTTGGGAAGATGGGACATTTGCAGAGACTGTTGGATCGATTCTTGTCATGTCGTCCAACGGGGTTGGCGAAGAATAGTAGGATGATTTTGTATGCTTTGTATCCTCTAGTGAGGGAGAGTTTTCAATTGTATGCAGATATTTGTGAGGTGTTGGCTGTTTTGCTCGACAAATTCTTTGATATGGAGTATTCTGACTGTATGAAGGCATTTGATGCATATGGTAGTTCAGCTAAGCAGATTGATGAGCTAATTGCATTCTACAATTGGTGTAAAGATACAGGAGTTGCTAGGTCCTCTGAGTATCCAGAGGTGCAGAGAATCACCAGTAAGTTACTGGAGACATTGGAGGAGTTTTTGAGGGAAAGAGGGAAGAGGCCGAAGAGTCCCGAGAGGGAGCCGCCTCCACCTGCTCCTGAAGAGGAAGAACCAGTGCCTGATATGAATGAAATAAAAGCTCTTCCTCCACCTGAAAATTACACTCCACCTCCGCCCGAGCCCGAGCCCCAGCCTGCGCCCAAACCTCAACCACAAGTCACGGAAGACTTGGTCAATCTGAGAGATGATGCAGTTAGTGCAGATGATCAAGGTAATAAATTGGCATTGGCTCTGTTTGCTGGTCCAGCAGCTAATGGTGCAAATGGATCCTGGGAAGCTTTCCCTTCCGATGGACAGCCAGAAGTAACCTCTGCCTGGCAGAACCCGGCTGCTGAATCTGGCAAAGCCGACTGGGAGTTGGCTTTGGTTGAGACAGCAAGCAATTTATCAAGGCAGAAAGCAGCACTCGGCGGTGGACTCGACCCATTATTGTTAAATGGTATGTATGATCAAGGAATGGTTAGGCAGCACACTAGCACCTCACAGCTGAGCGGTGGAAGCGCTAGTAGTGTAGCATTGCCCGGTCCTGGAAACAGCAAAACTCCTGTACTGGCTCTTCCAGCTCCAGATGGAACTGTCCAGGCAGTGAATCAGGATCCTTTCGCAGCATCGTTAAGCGTTCCACCTCCTTCTTATGTGCAAATGGTGGAGATGGAGAAGAAACAGCATCTGCTGACGCAGGAACAGCAGTTATGGCAGCAGTATGCAAGAGATGGGATGCAGGGACAGAGCAGTTTGAACAAAATCAGTAACCCCCCAGGTTACTACAACACGGCCGTGGCACCAATGGCTCCGATGCCCTATGGAATGCCTCCGATGAACGGAATGGGCGGGTATTACTACGTTCCTCAATGA 1962 49.69 MAPSTIRKAIGAVKDQTSIGIAKVASNMAPDLEVAIVKATSHDDDPASEKYIREILSLTSYSRGYVSACVSAISKRLAKTRDWIVALKALILVHRLLNEGDPVFQEEILYATRRGTRLLNMSDFKDEAHSSSWDHSAFVRTYAFYLDQRLELMLFEKKGGSARGNSRGDDRFDGRDDFRSPPPRPYDNGYGEYRGEREYGNYGGMRRSRSYGDVGESVGRDGEGQGRNNKGPVTPLREMTIERVFGKMGHLQRLLDRFLSCRPTGLAKNSRMILYALYPLVRESFQLYADICEVLAVLLDKFFDMEYSDCMKAFDAYGSSAKQIDELIAFYNWCKDTGVARSSEYPEVQRITSKLLETLEEFLRERGKRPKSPEREPPPPAPEEEEPVPDMNEIKALPPPENYTPPPPEPEPQPAPKPQPQVTEDLVNLRDDAVSADDQGNKLALALFAGPAANGANGSWEAFPSDGQPEVTSAWQNPAAESGKADWELALVETASNLSRQKAALGGGLDPLLLNGMYDQGMVRQHTSTSQLSGGSASSVALPGPGNSKTPVLALPAPDGTVQAVNQDPFAASLSVPPPSYVQMVEMEKKQHLLTQEQQLWQQYARDGMQGQSSLNKISNPPGYYNTAVAPMAPMPYGMPPMNGMGGYYYVPQ 653
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28388085 28390046 + Lsi04G021250.1 Lsi04g02125 662174

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02125 653 MobiDBLite consensus disorder prediction 525 545 - -
Lsi04g02125 653 MobiDBLite consensus disorder prediction 160 193 - -
Lsi04g02125 653 Gene3D - 2 155 IPR008942 -
Lsi04g02125 653 PANTHER CLATHRIN ASSEMBLY PROTEIN 5 629 IPR045192 GO:0048268|GO:0072583
Lsi04g02125 653 SUPERFAMILY ENTH/VHS domain 30 151 IPR008942 -
Lsi04g02125 653 SUPERFAMILY GAT-like domain 235 365 - -
Lsi04g02125 653 MobiDBLite consensus disorder prediction 363 382 - -
Lsi04g02125 653 Pfam ANTH domain 31 365 IPR011417 GO:0005543
Lsi04g02125 653 MobiDBLite consensus disorder prediction 213 233 - -
Lsi04g02125 653 Gene3D ANTH domain 227 372 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Lsi04g02125 653 MobiDBLite consensus disorder prediction 160 182 - -
Lsi04g02125 653 MobiDBLite consensus disorder prediction 525 549 - -
Lsi04g02125 653 SMART enth_2 30 160 IPR013809 -
Lsi04g02125 653 MobiDBLite consensus disorder prediction 399 419 - -
Lsi04g02125 653 MobiDBLite consensus disorder prediction 363 421 - -
Lsi04g02125 653 PANTHER - 5 629 - -
Lsi04g02125 653 ProSiteProfiles ENTH domain profile. 24 160 IPR013809 -
Lsi04g02125 653 CDD ANTH_N_AP180_plant 32 152 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02125 - - - csv:101207892 1098.19
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02125 Lsi-Chr4:28388085 Lsi04g02126 Lsi-Chr4:28400891 0 tandem
Lsi03g00801 Lsi-Chr3:11870092 Lsi04g02125 Lsi-Chr4:28388085 9.09E-146 transposed
Lsi04g01118 Lsi-Chr4:14582251 Lsi04g02125 Lsi-Chr4:28388085 2.34E-44 transposed
Lsi04g01119 Lsi-Chr4:14603835 Lsi04g02125 Lsi-Chr4:28388085 1.33E-14 transposed
Lsi05g00812 Lsi-Chr5:12535270 Lsi04g02125 Lsi-Chr4:28388085 9.37E-18 transposed
Lsi06g00990 Lsi-Chr6:19922428 Lsi04g02125 Lsi-Chr4:28388085 1.08E-109 transposed
Lsi06g01007 Lsi-Chr6:20138048 Lsi04g02125 Lsi-Chr4:28388085 4.21E-15 transposed
Lsi08g00992 Lsi-Chr8:18391061 Lsi04g02125 Lsi-Chr4:28388085 1.89E-09 transposed
Lsi09g00704 Lsi-Chr9:7977670 Lsi04g02125 Lsi-Chr4:28388085 2.89E-15 transposed
Lsi11g00014 Lsi-Chr11:124831 Lsi04g02125 Lsi-Chr4:28388085 4.15E-07 transposed
Lsi11g00791 Lsi-Chr11:9247096 Lsi04g02125 Lsi-Chr4:28388085 6.74E-10 transposed
Lsi11g01675 Lsi-Chr11:24986912 Lsi04g02125 Lsi-Chr4:28388085 5.08E-89 transposed
Lsi04g02125 Lsi-Chr4:28388085 Lsi06g00989 Lsi-Chr6:19921541 1.49E-85 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g489 Blo01g01391 Blo12g01075 Bda01g00749 Bda03g00072 Bpe02g01249 Bpe02g00559 Bma04g00069 . . . . . . . . . Cpe06g00339 . . . . . . . Cla05g01735 Cam05g1849 Cec05g1861 Cco05g1921 Clacu05g1837 Cmu05g1720 Cre05g1851 . . . . Lsi04g02125 Csa03g04333 . . Blo17g00018 Blo18g00021 . Bda13g01259 Bpe14g00582 Bpe04g00057 Bma01g01275 Bma02g00022 Sed05g1706 . Cmo09g00466 Cma09g00455 . . . . . Bhi09g02235 Tan01g3643 Cmetu04g0392 . Hepe01g2019 Mch11g0554 . . . . . . . . . . . Cme04g00411
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001058 4 2 5 5 5 2 0 2 2 1 2 2 2 2 2 3 2 3 3 2 1 3 3 3 4 4 2 5 4 1 81
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02125 Lsi_Chr04 FPKM 8.278751 9.817554 3.868564 4.558329 3.222377 2.94644 2.943419 300.559814 339.025269 319.563293
Lsi04g02125 Lsi_Chr00 FPKM 84.846916 100.474266 103.07933 97.71257 38.246994 23.788145 35.524426 89.410965 93.301003 106.727158