Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02129 ATGAACTGGATTGATAACAATGGCTTGTTTCTTATATCAAATAATTCTAAATTTGGATTCGGGTTTGTGACTACTCAAGATGTGACAATGTTTTTACTAGCTATCATCCACACAGGCAGCTTAAGAGTAGTTTGGTCTGCAAATAGGGCCTTTCCTGTTGCTAATTCTGATGAATTTACATTTGATGAGAAGGGAAATGTAATGTTGAAGAAGGGTTCTGTTGTTGTTTGGTCTACAAATTCCAGTGATAAAGGTGTTTCTGCCTTGGAGTTGCAAAACTCGGGAAATTTGGTTTTACGAGCGAACGATAGCGACGGTGGAATAGTTTGGCAGAGTTTTAGCCATCCAACTGATACTCTTTTATCAGGGCAGGATTTTGTTGAAGGAATGAGACTTGTGAGTGATCTTAGCAATAATAACTTGAGCTATTACCTTGAAATGAAGTCTGGTGATATGACTCTCTCAGCAGGCTTCCAATCCCCACAGCCTTACTGGTCTATGGCTAAGGAGAATCGTAAAACCGTTAATAAAAACGGTGGGGCAGTCTCCTTGGCGACTCTTGATGCAAACTCTTGGAAGTTCTATGATCGAAGCAAAGTCTTGCTATGGCAATTCATCTTCTCGAATAAAGCCAATGAAAATGCTACTTGGATAGCAGTTTTAGGAGATGATGGTTTCATGTCTTTTTATAATCTTCAAGATTCTGGTGCGGCTTCGACTACTCGGATACCTGAAGATTCTTGTAGCACACCAGAGCCGTGTGGCCCGTATTTTATATGTTATAGTGAGAACCGATGCCAATGCCCTTCAGTTCTTAGCACAAATTCAAATTGCCAACCTGGGATTGTCTCTCCTTGTGATCAATCAAATGGAAGTATAGAGCTTGTAAGTGCAGGGACTGGGGTCAAATATTTTGCACTCGGATTCCTACCGTCCGCTTCAACGACTGATTTAAATGGTTGCAAAAACTCTTGCATGAACAACTGTTCTTGCCGTGCAGTGTTCTTTGAAAGCCGAACAGGGAACTGCTTCTTGTTTGACGACGTAGGTAGCTTTCAAAACTCTGATGAGGACACTGACTTTGTCTCATACATCAAGGTCTTGAACAACGGAGGTGGTGGTGACAACAACGGTGGGAGTAGAAATGGTGGAATGAACTCTCGTATTGTTGCGATCATCATTGTTTTTACCGTGTTCGTCATTTGTGGTCTAGTTTATTTGGCATTTTGTTACTACAGGAAAAAGAAAAAACTGCCAGGAACTCCACACGAGACTTCCGAGGATGATAACTTCTTGGACGGTTTAACGGGGGCGCCCATTCGTTATAGCTACGACGATCTTCAAACTGCAACCAATAATTTCTCTATAAAGCTTGGTCAGGGAGGATTTGGCTCAGTATATCAAGGAGTTCTACTTGATGGAACTCGGGTTGCCGTGAAGAAATTGGAAGCAATCGGTCAGGGGAAGAAGGAGTTTCGAGCTGAAGTGAGCATAATTGGTAGTATCCATCATGTTCACTTGGTCAGGCTGAAGGGCTATTGTGCTGAAGGATCACACAAGCTTCTTGCTTATGAATACATGGGAAATGGGTCTTTGGACAAATGGATATTTAGGAAGAACAAAGAAGATTTTTTGTTAGATTGGAATACAAGATTCAATATTGCATTAGGAACAGCTAAAGGACTAGCGTACCTCCATGAAGATTGTGATGTAAAGATTATTCACTGTGACATCAAACCTGAAAATGTCCTTCTCGACGACAAATTCCTTGCAAAAGTATCAGATTTCGGCCTTGCAAAGCTAATGACACGTGAGCAGAGTCATGTTTTTACGACACTAAGAGGAACTCGAGGGTATCTTGCACCAGAGTGGATCACAAACTACGCCATTTCAGAGAAGAGTGACGTGTATAGCTACGGGATGGTGTTGCTTGAGATAATCGGTGGAAGAAAAAACTTTGACTCAACAGAAACTTCAGAAAAATGCCACTTCCCATCCTATGCTTTTAAAATGATGGAAGAAGGAAGACTTGAAAACATCCTCGACTCGAATCTAGTCGTAAACGATGGTGATGAGAGAGTTTTTACAGCCATTAAAGTTGCATTGTGGTGCGTACAAGAAGATATGCACCTTAGACCACCAATGACTAGAGTAGTCCAAATGCTCGAAGGCCTTTGTGCCGTTCCTCCTCCTCCAACTTCCTCCCCGCTCGGTTCTCGCCTATTTTCAAGTTTCTTCAAATCAATCAGTGAGGGAGGAACCTCTTCCGGGCCATCGGACTGCAACAGCGATGCGTATCTTTCGGCAGTGAAGCTCTCTGGGCCAAGATGA 2331 42.39 MNWIDNNGLFLISNNSKFGFGFVTTQDVTMFLLAIIHTGSLRVVWSANRAFPVANSDEFTFDEKGNVMLKKGSVVVWSTNSSDKGVSALELQNSGNLVLRANDSDGGIVWQSFSHPTDTLLSGQDFVEGMRLVSDLSNNNLSYYLEMKSGDMTLSAGFQSPQPYWSMAKENRKTVNKNGGAVSLATLDANSWKFYDRSKVLLWQFIFSNKANENATWIAVLGDDGFMSFYNLQDSGAASTTRIPEDSCSTPEPCGPYFICYSENRCQCPSVLSTNSNCQPGIVSPCDQSNGSIELVSAGTGVKYFALGFLPSASTTDLNGCKNSCMNNCSCRAVFFESRTGNCFLFDDVGSFQNSDEDTDFVSYIKVLNNGGGGDNNGGSRNGGMNSRIVAIIIVFTVFVICGLVYLAFCYYRKKKKLPGTPHETSEDDNFLDGLTGAPIRYSYDDLQTATNNFSIKLGQGGFGSVYQGVLLDGTRVAVKKLEAIGQGKKEFRAEVSIIGSIHHVHLVRLKGYCAEGSHKLLAYEYMGNGSLDKWIFRKNKEDFLLDWNTRFNIALGTAKGLAYLHEDCDVKIIHCDIKPENVLLDDKFLAKVSDFGLAKLMTREQSHVFTTLRGTRGYLAPEWITNYAISEKSDVYSYGMVLLEIIGGRKNFDSTETSEKCHFPSYAFKMMEEGRLENILDSNLVVNDGDERVFTAIKVALWCVQEDMHLRPPMTRVVQMLEGLCAVPPPPTSSPLGSRLFSSFFKSISEGGTSSGPSDCNSDAYLSAVKLSGPR 776
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28415176 28417506 + Lsi04G021290.1 Lsi04g02129 662178

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02129 776 ProSiteProfiles PAN/Apple domain profile. 286 366 IPR003609 -
Lsi04g02129 776 ProSiteProfiles Bulb-type lectin domain profile. 1 112 IPR001480 -
Lsi04g02129 776 CDD PAN_AP_plant 286 367 - -
Lsi04g02129 776 CDD B_lectin 4 116 IPR001480 -
Lsi04g02129 776 Gene3D Transferase(Phosphotransferase) domain 1 527 728 - -
Lsi04g02129 776 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 1 776 - -
Lsi04g02129 776 Pfam Protein kinase domain 457 720 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g02129 776 Pfam D-mannose binding lectin 43 126 IPR001480 -
Lsi04g02129 776 ProSitePatterns Protein kinases ATP-binding region signature. 458 481 IPR017441 GO:0005524
Lsi04g02129 776 SUPERFAMILY Protein kinase-like (PK-like) 436 723 IPR011009 -
Lsi04g02129 776 Gene3D Hepatocyte Growth Factor 301 382 - -
Lsi04g02129 776 Gene3D Phosphorylase Kinase; domain 1 423 526 - -
Lsi04g02129 776 SMART serkin_6 452 722 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g02129 776 ProSitePatterns Serine/Threonine protein kinases active-site signature. 573 585 IPR008271 GO:0004672|GO:0006468
Lsi04g02129 776 PIRSF SRK 2 772 IPR024171 GO:0004674
Lsi04g02129 776 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 1 776 - -
Lsi04g02129 776 SUPERFAMILY alpha-D-mannose-specific plant lectins 42 167 IPR036426 -
Lsi04g02129 776 ProSiteProfiles Protein kinase domain profile. 452 725 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g02129 776 SMART ntp_6 297 367 IPR003609 -
Lsi04g02129 776 CDD STKc_IRAK 458 725 - -
Lsi04g02129 776 Gene3D - 5 115 IPR036426 -
Lsi04g02129 776 SMART blect_4 2 116 IPR001480 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02129 - - - csv:101207644 1446.41
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi04g02129 Lsi08g01207 CCT
Lsi04g02129 Lsi08g01207 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02129 Lsi-Chr4:28415176 Lsi07g00458 Lsi-Chr7:4879545 0 dispersed
Lsi06g00941 Lsi-Chr6:19329829 Lsi04g02129 Lsi-Chr4:28415176 1.55E-98 dispersed
Lsi03g01934 Lsi-Chr3:30758435 Lsi04g02129 Lsi-Chr4:28415176 6.39E-18 transposed
Lsi03g02267 Lsi-Chr3:33591077 Lsi04g02129 Lsi-Chr4:28415176 5.08E-15 transposed
Lsi04g02017 Lsi-Chr4:27251629 Lsi04g02129 Lsi-Chr4:28415176 1.03E-23 transposed
Lsi04g02129 Lsi-Chr4:28415176 Lsi08g01207 Lsi-Chr8:20602006 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g485 Blo01g01390 . Bda01g00747 . Bpe02g01248 Bpe02g00561 . . . Cmo12g00289 . . Car09g00401 Car12g00321 . Cpe07g00298 Cpe06g00340 Bhi04g00947 . . . . . Lcy13g1792 Cla05g01737 . . . . . . Cone4ag1783 Cone7ag1698 . . Lsi04g02129 Csa03g04335 Chy04g00367 Cme03g01614 . Blo18g00024 Bda01g01002 Bda13g01262 Bpe14g00581 . Bma01g01276 Bma02g00024 . . Cmo09g00467 Cma09g00458 Cma12g00340 . . . . Bhi09g02238 . . . . Mch11g0555 . Cla08g01336 . . . . . . Lsi08g01207 . Chy03g01118 Cme04g00409
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001479 3 3 3 4 3 2 2 2 2 2 2 2 2 2 1 2 2 7 2 2 2 2 2 2 1 2 1 2 2 2 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83609 PF00069 Pkinase 2.80E-49 CL0016 Lsi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02129 Lsi_Chr04 FPKM 26.015873 31.336464 31.43578 23.884523 31.563902 26.823606 30.03614 39.816212 52.329216 53.481579