Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02130 ATGGAGGAGGAGGAGGAAGAGATGGAATGGTTGATTGTGGTGATGAATCTTATCTTGATAATTTCTGTAAGTTTGATGTTAATGTATGGCATCGACCTGATGGATGGCAAATTTTTTGCAATTGAGAATTCTCTTATTTTACACCAAATGATGGAATCGGAAATCCTTGTACCTGCTGATGGGCTCAAACTGACCCTTCAAAATGGGTTTCATGAGCATGTTTCTGCCTCCCCAGAGGAAATTGTTCCTAAGGTGATTGTGAGTGAGGGCATAAACAAAGACACAGGAGCTACAATGCAGCAAGAAAATATCGAGAATGATATCAAATTGAGTGCCAGTGCAACCAACGAATTGACCACAAGAGAACTCACGGAGGGATCAAGCTTTCCGGCAGAAAGCGATATATCGACCCTTTCTAAGGCAGCCTACTTTGAAGGAGAGGAAAAGAATGTTGATCCTCCCAAGAAAATGAAACCAGAGAAGGGTCAAGTTAAGAGCAAGAATGAAAAGTCATCAGGCTTTAAACACATTTCTTCGACTGGGGTGAATAAGAATAAAGATGGAAAAGATGCAGAACAGATTGCTGCTCTTTTAAATGATTCAGGTACAGGTACATCGCATCCACACTCAAAACGGCCTAGTAAGAGTAGATCATTCAATGAGAGGCAAACTCAAGTGCCAAAGGTAATAGTTTCTGCACATTGCCTTCTTGACTCGTCTATGCTCTCGAATACTCATCCCCCTGGGCGGCAGCAACCTGAGAAATCTGATGGGGAAGGCTCCAAGGAGAATACGAACCTGAAACCTTTGAAGAAAGGTCAGCCTAGTAAATCAGAAGGAGAGTCGGAATCTTCTTTAAGTCCCAGAGCAGGAGATGACAAACCAAATAGGGTTGGGAGACTTCCTAACTATGGTTTTAGTTTTAGATGCAATGAGCGTGCTGAGAAAAGAAGAGAGTTCTATTCGAAACTTGAGGAAAAGATACAAGCTAAGGAAGTAGAAAAGAACACTTTACAGGCAAAGTCCAAGGAAACTCAAGAGGCTGAGATTAAAATGCTTAGAAAGAGTTTGAACTTTAAAGCAACTCCCATGCCGAGCTTTTATCAGGAACCACCTCCTCCCAAAGTCGAATTGAAAAAGAGTTCAACCCCAGCAGCAGACTCTTCAAGTAATGATGGCGGTGATGTGCGATCAGCTCGCTTAAGTCTCGACGAGAATGTGGCTCTGAATAACAATTCTAAGAGGGTCTCTCCTGCCCGTTCAGACAAGCCGAAACGCAGGTCTCTTCCTAGTCTGCCTTCTGAGAAAACTACGATACCTGGTGTCGTAACAAATGCAGGGAAATCCTCTGCAACCAAGGTGAAAAATGTGGAGAAGCCTGCAGCAGCATCTACTACAAATGGAAAGAAAGAAGAAAAACGGGCATCATCTGAAGCAGCAACAACAAAGAAGTCTGCGTGTTTAAGATCGATAGACGAAGAGAAAACTGCTCCATCAAACACAACAAACAAAGTCGCGAATCTGAGCCAGGAGGAGAATGGAGTTGAGGCTAGTGAAACAGAGAACCAGACAGACGATGAACCAGAGAATGAAGAACAAGATGAGGATCAGAGCTTGGTTGAAGACGGTGCAGAATTGGAGCAGTCATCGAGCATCGTT 1659 43.34 MEEEEEEMEWLIVVMNLILIISVSLMLMYGIDLMDGKFFAIENSLILHQMMESEILVPADGLKLTLQNGFHEHVSASPEEIVPKVIVSEGINKDTGATMQQENIENDIKLSASATNELTTRELTEGSSFPAESDISTLSKAAYFEGEEKNVDPPKKMKPEKGQVKSKNEKSSGFKHISSTGVNKNKDGKDAEQIAALLNDSGTGTSHPHSKRPSKSRSFNERQTQVPKVIVSAHCLLDSSMLSNTHPPGRQQPEKSDGEGSKENTNLKPLKKGQPSKSEGESESSLSPRAGDDKPNRVGRLPNYGFSFRCNERAEKRREFYSKLEEKIQAKEVEKNTLQAKSKETQEAEIKMLRKSLNFKATPMPSFYQEPPPPKVELKKSSTPAADSSSNDGGDVRSARLSLDENVALNNNSKRVSPARSDKPKRRSLPSLPSEKTTIPGVVTNAGKSSATKVKNVEKPAAASTTNGKKEEKRASSEAATTKKSACLRSIDEEKTAPSNTTNKVANLSQEENGVEASETENQTDDEPENEEQDEDQSLVEDGAELEQSSSIV 553
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28429360 28433630 + Lsi04G021300.1 Lsi04g02130 662179

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02130 553 Pfam Targeting protein for Xklp2 (TPX2) domain 306 376 IPR027329 -
Lsi04g02130 553 MobiDBLite consensus disorder prediction 146 309 - -
Lsi04g02130 553 MobiDBLite consensus disorder prediction 518 542 - -
Lsi04g02130 553 MobiDBLite consensus disorder prediction 356 553 - -
Lsi04g02130 553 MobiDBLite consensus disorder prediction 382 396 - -
Lsi04g02130 553 MobiDBLite consensus disorder prediction 465 479 - -
Lsi04g02130 553 MobiDBLite consensus disorder prediction 252 266 - -
Lsi04g02130 553 MobiDBLite consensus disorder prediction 146 172 - -
Lsi04g02130 553 Coils Coil 311 348 - -
Lsi04g02130 553 MobiDBLite consensus disorder prediction 431 452 - -
Lsi04g02130 553 PANTHER PROTEIN WVD2-LIKE 5-RELATED 51 536 - -
Lsi04g02130 553 MobiDBLite consensus disorder prediction 494 517 - -
Lsi04g02130 553 MobiDBLite consensus disorder prediction 237 251 - -
Lsi04g02130 553 PANTHER PROTEIN WVD2-LIKE 4 51 536 IPR044833 GO:0008017
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02130 - - - csv:101207396 656.366
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01794 Lsi-Chr3:29368411 Lsi04g02130 Lsi-Chr4:28429360 9.76E-23 dispersed
Lsi04g02130 Lsi-Chr4:28429360 Lsi06g00788 Lsi-Chr6:16327382 2.58E-17 dispersed
Lsi04g02130 Lsi-Chr4:28429360 Lsi09g01259 Lsi-Chr9:20253282 1.97E-23 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g483 . Blo12g01076 Bda01g00746 Bda03g00071 . . Bma04g00068 . . . Cma01g01504 . Car09g00402 . . . Cpe06g00341 . . . . . . . Cla05g01738 Cam05g1851 Cec05g1863 Cco05g1924 Clacu05g1841 Cmu05g1722 Cre05g1854 Cone4ag1784 Cone7ag1699 Cone17ag1020 Cone20ag0671 Lsi04g02130 Csa03g04336 Chy04g00366 . . Blo18g00025 Bda01g01001 . . Bpe04g00056 . . Sed05g1701 Cmo01g01561 Cmo09g00468 Cma09g00459 . . . . Cpe02g00451 Bhi09g02239 Tan01g3647 Cmetu04g2939 . Hepe01g2022 Mch11g0556 . . . . . . . . . . . Cme04g00408
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006493 2 1 1 1 2 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 1 2 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02130 Lsi_Chr04 FPKM 52.435741 71.051674 43.483055 44.630466 61.391144 66.302353 50.920761 94.18055 95.067436 88.568497