Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02133 ATGGTTTATTCAAGGAAGTTCAGAGGAGTCAGGCAGCGGCAGTGGGGCTCTTGGGTGTCAGAAATTCGCCACCCATTGCTGAAGAGAAGGGTGTGGCTGGGGACATTTGACACAGCAGAGGATGCAGCACGAGCGTATGATCAAGCAGCCATCTTGATGAATGGCCAAAACGCCAAGACCAATTTCCCTGCATCTAATGACCAATCTGAAGAAGCCAGCCATCGCCATGGTTCTTCTCCAATGTCCCCAAAAGCACTTTCGGAGCTACTCAGCACAAAGCTTAGGAAGTGCTGCAAGAACCCATCTCCCTCCTTGACATGCCTGCGGCTCGACAGTGACAACGCTCACATCGGCGTATGGCAGAAGCGCGCAGGCACTCGAGCTACCTCTAATTGGGTCATGAGGATTGAGCTAGGGAAGAAAGAGATACCGTCGCCTGAATCAACAAGCCAGGAAGCTGATGGCCATGGGAATGGAATTGATGAAGAAGACAGAATCGCAATGCAAATGATTGAAGAGTTACTCAATTGGAACTGCCCTTTTCCTTCTACTTCAAGCTAA 561 50.09 MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKTNFPASNDQSEEASHRHGSSPMSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVWQKRAGTRATSNWVMRIELGKKEIPSPESTSQEADGHGNGIDEEDRIAMQMIEELLNWNCPFPSTSS 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28467155 28469276 + Lsi04G021330.1 Lsi04g02133 662182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02133 186 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SHINE 2 1 184 - -
Lsi04g02133 186 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Lsi04g02133 186 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Lsi04g02133 186 MobiDBLite consensus disorder prediction 58 84 - -
Lsi04g02133 186 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Lsi04g02133 186 CDD AP2 6 65 IPR001471 GO:0003700|GO:0006355
Lsi04g02133 186 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Lsi04g02133 186 MobiDBLite consensus disorder prediction 140 164 - -
Lsi04g02133 186 Pfam AP2 domain 6 55 IPR001471 GO:0003700|GO:0006355
Lsi04g02133 186 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Lsi04g02133 186 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 184 - -
Lsi04g02133 186 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02133 Lsi-Chr4:28467155 Lsi07g00465 Lsi-Chr7:4943990 7.30E-52 dispersed
Lsi11g00320 Lsi-Chr11:3283759 Lsi04g02133 Lsi-Chr4:28467155 1.14E-73 wgd
Lsi04g02133 Lsi-Chr4:28467155 Lsi06g00969 Lsi-Chr6:19664746 1.11E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25254 PF00847 AP2 3.60E-13 CL0081 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02133 - - csv:101206916 353.599