Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02134 ATGCGGTATCATAATTCTCGAATCAGGTTATACTATCTCCATTTCCATACAAGCCCTAATTGGTGCCTTCAAGGAAAAAGGGAGCGAGCGAAAATCTGGGATTGTAAGATTTATTTCGTAGCTACGAATTTTCTCGGTGGCCAGACGCCCTTTGGGAGATATTTTCCTTCCGAAATTCCGATCGAAGAGTTGAAAGCTGACGGCGAAAGATCAGGCATGTTGCTGGCTGTGCTAATCGCCAACTCCGTCGGCAACATTCTCGTCGAACGGTTTCATGGAGTTCCGGCAGAGGAACGATTGCATTGGCGATCCTTTTTAGTGAAGCTGGGAGCTGATAATCTCAAAGGTGCAAAAAATGAAGAGCTATATGTTGCTTCACACAAGTCTGTATATATTGTTTACACTGTGCTTGGCGATGTTGCAGTTTATGTTGTTGGGAAGGACGAATATGATGAATTAGCTTTGGCAGAAGTGATCTTTGTAATAACATCAGCGATAAAGGATGCCTGTGGGAAAGCTCCAACTGAGCGCTTGTTTCTTGACAAATATGGAAAGATTTGTTTGTGTCTTGATGAAATTGTCTGGACGGGCATCTTGGAGAACACGGAGAAAGACAGGATCAAGAGGCTGATAAGTATGATTGAATCTACTTTACCAGAGTGGAGAGATGAATACATTTCGTATAAGGTATTGAAGAAGCAATTGAAATTGATGTACCCTGATGAAGATGAAGATGATGGTGGAAACCCTAAACGCTTAAAGTTAGGTGGAGAAGCTTCTATGGAAATCTTTCTGAATCTGCTTGAAGAAGAAGTGGACAAGTTTAATCAATTCTTTGAAGGCAAGGAGGAGTATTATGTTATTAAGTGGAGGTTATTGCAAGAGAAGGTAGCGATGGTTGGAGATTCGAACAAAATGCTGATGGAAGTAGGGAGAGACATTGCAGACTTCCATGGAGAGATGGTTTTGTTAGAGAATTATAGTGCTTTGAATTACACAGGATTGGCCAAGATTCTAAAGAAGTACGACAAGCGAAGCGGCGAGCTCATCCGTGTGCCATTCATCAAGAAGGTGTTACGCCAACCGTTCTACTCAACCGACGTGCTCGATAAGCTATTGAAGGAATGTGAGATTATGCTTGATATTCTCTTCTTCAAGAAAGACATGTCGTGTGCTGCTAGTGCTGAAGCAGTCAATGAGGAAGAAAGGGGTTGCTCGGAGGCGAAGACGACTACGACCGAGAGTAAAGAAAAGGTGTTGAACATTCCCGAAGATCTTGCAGAGATCGAGTACATGGAGAGTATGTACTTGAAGCTAACGTTCTCGGCGCTGAATGTTCTTAAGGAGATTAGGGGTGGAAGTTCAACAATTGATGTTTTCTCATGGCTTTGA 1392 42.6 MRYHNSRIRLYYLHFHTSPNWCLQGKRERAKIWDCKIYFVATNFLGGQTPFGRYFPSEIPIEELKADGERSGMLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVITSAIKDACGKAPTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLISMIESTLPEWRDEYISYKVLKKQLKLMYPDEDEDDGGNPKRLKLGGEASMEIFLNLLEEEVDKFNQFFEGKEEYYVIKWRLLQEKVAMVGDSNKMLMEVGRDIADFHGEMVLLENYSALNYTGLAKILKKYDKRSGELIRVPFIKKVLRQPFYSTDVLDKLLKECEIMLDILFFKKDMSCAASAEAVNEEERGCSEAKTTTTESKEKVLNIPEDLAEIEYMESMYLKLTFSALNVLKEIRGGSSTIDVFSWL 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28474688 28483574 + Lsi04G021340.1 Lsi04g02134 662183

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02134 463 CDD SPX_AtSPX1_like 208 345 - -
Lsi04g02134 463 Gene3D - 70 214 - -
Lsi04g02134 463 SUPERFAMILY SNARE-like 73 213 IPR011012 -
Lsi04g02134 463 Pfam SPX domain 315 357 IPR004331 -
Lsi04g02134 463 Pfam Clathrin adaptor complex small chain 73 214 IPR022775 -
Lsi04g02134 463 ProSiteProfiles SPX domain profile. 204 356 IPR004331 -
Lsi04g02134 463 PANTHER SPX DOMAIN-CONTAINING PROTEIN 1 208 462 - -
Lsi04g02134 463 PANTHER SPX DOMAIN-CONTAINING PROTEIN 3 208 462 IPR031142 GO:0016036
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02134 - - - bhj:120086831 435.647
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01469 Lsi-Chr2:20400450 Lsi04g02134 Lsi-Chr4:28474688 4.57E-33 dispersed
Lsi04g02134 Lsi-Chr4:28474688 Lsi09g01661 Lsi-Chr9:25019480 2.51E-17 dispersed
Lsi11g00319 Lsi-Chr11:3275097 Lsi04g02134 Lsi-Chr4:28474688 1.14E-30 wgd
Lsi04g02134 Lsi-Chr4:28474688 Lsi06g00968 Lsi-Chr6:19630371 3.54E-78 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g476 Blo01g01384 . Bda01g00742 . . Bpe02g00565 . . . . Cma01g01500 . . . . . . . . . . . . . Cla05g01742 Cam05g1855 Cec05g1867 Cco05g1930 Clacu05g1846 Cmu05g1727 Cre05g1859 . . . . Lsi04g02134 Csa03g04340 Chy04g00362 . . . . . . . . . Sed13g2028 Cmo01g01556 . . . . . . Cpe02g00455 Bhi09g02250 Tan01g3654 Cmetu04g0930 . Hepe01g2027 Mch11g0561 . . . . . . . . . . . Cme04g00404
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014025 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 24
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02134 Lsi_Chr04 FPKM 24.607901 25.23912 1.67949 2.143862 1.207778 0.94909 1.808426 11.83163 13.091828 12.955596