Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02139 ATGTGGCTGGTTAGCGGGAAGAACACGTCGTCACTTTCCATTTTCGTTGCAGTTTTCAGGTACATCAACGATTTGGAGCTCTCGATTCGGGAAATTGCAACGTTCTCTTCTTGCAGAAAAACAACACGCTATACTTCGAATCGAAGAAGGAGAAGAAATTGTGATTCGAAGATGAAAAGAGGACCTTCAACTTCAACAATTTCTTCGCTACTGTCGCTGAGGTTCACTCGTCAACAATCTTCGAAGTTCGGCGTTGATCCGTGTGTTCGATTCCTCTCTTCGTCTACAAAGCCTTCAGAGAATAGGCGCTTTGGATTCCGCAATGCCGTAGTCTTGCTTGTAGATTTATTTCGGACCTGTAATATGAGATCCATTCTTTCAGGGCTATTAAATCAGTACAAGCATCTAGTTGAGCGAGGGGAGCTACAACATGATCCTTTTCAAGAGAGAGTGGCTTCCAAATTGGAGAGTTTGCTTGGAAGGTTGGAGCAATATGAAAAGGATATGGAGGAGTATCATGTAAAACTAGCTAACTGGAAGCAGAATAGAGAGAACGAGAGGCGTAGACTTTTAATGGAGGAAGCTGAGTCTAAACAACAGGGTGATGTATGGACATCAGTAAACAAGCGCCGAAGCAAACTTGTTGAAACATTGATGTTTCGGAAAAATTCTGAAAATATTGAACCTGGAGTCGGAAAATGGGTTTCATACCTTAACCGAGAGAGGAAGTTGGATTCACTTGTAGGTCGCTGTCCTTCTGCTCCACATGCTCCTAGAGGACTGTACATATATGGCAATGTTGGAAGTGGGAAGACAATGCTCATGGATATGTTTTACAATGCTACTGAAGGAGTTGTTAAACATCGACAAAGATACCATTTCCATGAGAGATGCATGCCTTTTGTTTTCAGGATTGGTATTGGTCTTCAATTTTACTCCATTGTATGGCAGGCTATGCTTAAAATCAATGAAGATATGCACAAGATATGGAAAAATCAAGTGAGGGAGAAATCTTCACAATCCAGCATTTCAAGTTGGATTATGAATCTCCCCTTTGACACAAAAGTGAAGGAGTGGTTGGCTGCAGAAGAAAAATACAAGCAAGAGGTACAGATGAAAAACATTCTTCCTGCTGTGGCTGATAAATTTCTTGTTGATCAGCAAGCAGGTCAAGTAGGAGCTAGCATTCTTTGCTTCGATGAGATACAGACAGTTGATGTATTTGCTATTGTGGCCTTGTCTGGAATTGTAAGCAGATTGTTGAGTATTGGAACAGTTCTTGTAGCCACCAGCAATCGAGCTCCAAAGGACTTGAATCAGATGTTTGGGATTGGCGTTCATCTGACCTGTTTCTTCGGGATGAGAAGAGATCCTGACGTGACCAACCCTAAGATGATAGTATCATCTGTGACTATAGATTTCATCCCTTTGTCCTCGGAGAAAATGTTCCAGAACAAGCTCAAAGAACATGTATATCAGCAGTCTACTCACAGAACAAGGAATAAAAAAAAGAGTAATCACAGAGAACCAAAATCCACCCAGCACCTTCGAGAGAGCTGGAATTCCCTCCCTTCTTCAGCCTTCAGCTTTAGAAACTTCAGAAATGCCTCCTCTGCCTCCCTTGCCTCAACCGTTCTTAAACCTCAACTTCTCGTGGTCCCCATATGGTCCCGACTCGCTAACCATTTCTGTCTTCCATTCCACTGTCCTTTGCGGTCCCCGAATTACCTCTCTTACCCCTCCTCTGATAGGCACATCGAATTAGGGGATGGGATGCAGAAGGATATCTTCCAAAAGTTTGTCACCAAACTGGAGGAGCATTGTGAGTTTGTTCTTATTGGCAGTGAGATTGATTACCGGCGCTTTATAGCCCAAAGGTCTTTTGACCAGGTGCATTATTTTTGGCCTTTAGATTGCACATCAGTGGGCAAATTTGAAAAGATGTGGGTCGAAGTCACCAGCCAATTGGGAGGACAAATCACGTCTGAGACTATTCCTGTGATGTTTGGAAGAAAATTGGAGGTATCAGAAAGCTGCAATGGAGTGGCACGATTTGCATTTGATTTTCTCTGTGGTCAACCGGTAGGTGCTGCAGATTATATTGCCTTAGCCAAAAACTACCACACTGTCTTCATATCCGACATCCCAATGATGAGCATGCGCATTCGTGACAAGGCCCGACGGTTCATCACTCTCATCGATGAGCTATACAATCACCATTGCTGCCTATTTTGCTTGGCAGCTACTTCAATTGAGGATTTATTTCAAGGCACTGAAGAGGGTGCTCTTTTTGATTTGGAGAGTTTTCAGTTTGAAACAGAAGCAGAAGGGGGAAAGCTTCGTCGAAATGTCCTAGTGGAAGGCAATGTAGGATCAGTAGGTGCTCCAACTGCAATTGTGTCAATGCTATCTGGTCAAGAAGAGATGTTTGCATTCCGTCGAGCTGTTTCTCGATTGATTGAGATGCAGACACCATTATACTTGGAGGGAGTGCGAAACCTTCATCCATATTTCCAAAGACGAGAACAAGAATCATCAGTTGATCCAGCGCCCAGGTTCCAGTTTCAGCCATCATCTTGA 2580 43.26 MWLVSGKNTSSLSIFVAVFRYINDLELSIREIATFSSCRKTTRYTSNRRRRRNCDSKMKRGPSTSTISSLLSLRFTRQQSSKFGVDPCVRFLSSSTKPSENRRFGFRNAVVLLVDLFRTCNMRSILSGLLNQYKHLVERGELQHDPFQERVASKLESLLGRLEQYEKDMEEYHVKLANWKQNRENERRRLLMEEAESKQQGDVWTSVNKRRSKLVETLMFRKNSENIEPGVGKWVSYLNRERKLDSLVGRCPSAPHAPRGLYIYGNVGSGKTMLMDMFYNATEGVVKHRQRYHFHERCMPFVFRIGIGLQFYSIVWQAMLKINEDMHKIWKNQVREKSSQSSISSWIMNLPFDTKVKEWLAAEEKYKQEVQMKNILPAVADKFLVDQQAGQVGASILCFDEIQTVDVFAIVALSGIVSRLLSIGTVLVATSNRAPKDLNQMFGIGVHLTCFFGMRRDPDVTNPKMIVSSVTIDFIPLSSEKMFQNKLKEHVYQQSTHRTRNKKKSNHREPKSTQHLRESWNSLPSSAFSFRNFRNASSASLASTVLKPQLLVVPIWSRLANHFCLPFHCPLRSPNYLSYPSSDRHIELGDGMQKDIFQKFVTKLEEHCEFVLIGSEIDYRRFIAQRSFDQVHYFWPLDCTSVGKFEKMWVEVTSQLGGQITSETIPVMFGRKLEVSESCNGVARFAFDFLCGQPVGAADYIALAKNYHTVFISDIPMMSMRIRDKARRFITLIDELYNHHCCLFCLAATSIEDLFQGTEEGALFDLESFQFETEAEGGKLRRNVLVEGNVGSVGAPTAIVSMLSGQEEMFAFRRAVSRLIEMQTPLYLEGVRNLHPYFQRREQESSVDPAPRFQFQPSS 859
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28509009 28522418 + Lsi04G021390.1 Lsi04g02139 662188

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02139 859 PANTHER ATPASE N2B 317 440 IPR005654 GO:0005524|GO:0016887
Lsi04g02139 859 Gene3D - 239 445 IPR027417 -
Lsi04g02139 859 Coils Coil 148 196 - -
Lsi04g02139 859 Pfam AFG1-like ATPase 590 759 IPR005654 GO:0005524|GO:0016887
Lsi04g02139 859 Pfam AFG1-like ATPase 244 439 IPR005654 GO:0005524|GO:0016887
Lsi04g02139 859 MobiDBLite consensus disorder prediction 44 63 - -
Lsi04g02139 859 PANTHER ATPASE N2B 123 297 IPR005654 GO:0005524|GO:0016887
Lsi04g02139 859 PANTHER ATPASE N2B 590 847 IPR005654 GO:0005524|GO:0016887
Lsi04g02139 859 MobiDBLite consensus disorder prediction 490 519 - -
Lsi04g02139 859 PANTHER AFG1-LIKE ATPASE FAMILY PROTEIN 123 297 - -
Lsi04g02139 859 PANTHER AFG1-LIKE ATPASE FAMILY PROTEIN 590 847 - -
Lsi04g02139 859 PANTHER AFG1-LIKE ATPASE FAMILY PROTEIN 317 440 - -
Lsi04g02139 859 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 256 442 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02139 - - - mcha:111007517 570.466
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02139 Lsi-Chr4:28509009 Lsi06g01090 Lsi-Chr6:21190275 7.12E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g464 . Blo12g01080 . Bda03g00067 . . Bma04g00064 . . . . . Car09g00408 . . . . . . . . . . . Cla05g01746 Cam05g1859 Cec05g1871 Cco05g1934 Clacu05g1850 Cmu05g1731 Cre05g1863 . . . . Lsi04g02139 Csa03g04343 Chy04g00359 . . . . . . Bpe04g00052 . . Sed05g1692 . Cmo09g00473 Cma09g00466 . . . . . Bhi09g02257 Tan01g3659 Cmetu04g0660 . . . . . . . . . . . . . . Cme04g00401
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008383 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 1 1 1 1 1 3 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02139 Lsi_Chr04 FPKM 4.83881 4.860016 6.049566 5.529046 6.102781 6.030935 7.377869 3.228188 2.791961 2.989898