Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02141 ATGAGCTCACAGCTAGCAATAATCGAGTCCACCGACAACTACAAGCATTTGGTTCGAAGCTACCGACAATTTCCGTCAACTAACGACTTAAAATTTACCGCTCTCCGCCCAATAAACACTCGACACGTCATCAACTATAAAAGTATCCAAAAAGCCCGTGGCTTACTGAGCCGAGTCGAGCCGGTTAGAGCACAATGGAAACCAGTCGATCCGGTAATACAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCAGCTGGTTTAGAGTAAAGTTCGATGGAGATGGCGTACTGAGTGGGGGAAGATTTGAGGAGAAAAAAAAATCGATTTCTTCTTATTTGGGTCTTCCAATTCACTTCCGATCTGCTTCTGGTTCGGAATCTGAAGAAATTCCGACAAGATGGAAGCAAATGCGGGATTGGTGGCTGGATCTTACAAGAGGAATGAGCTTGTTCGGATTCGCCACGATTCCGATAGTGGGTCACTTGTGTGGTGTGTTGATCTGTGAAGTGGAAGTTCAGATGTGGCCTAAACCTCTGAAGAATTTAAACAGCCAAACATGTCAAATATGTGGTGACACAGTTGGTCTTACGGCCTCTGGCGACGTCTTTGTTGCTTGCAATGAATGTGCCTTTCCCGTTTGTCGTCCTTGTTATGAGTATGAGAGGAAAGATGGGAATCAGTCTTGCCCTCAGTGCAAGACTAGATACAAGAGGCACAAAGGGAGCCCTCGCGTTGATGGTGATGATGAGGAGGATGATGTGGATGACATTGAGAATGAGTTTAATTACGTCCAAGGAAGTGGCAAGACAAAACGACAGTGGCATGGGGAAGATGTTGAACTATCCACTTCTGCGAGACACGAGTCTCAACAGCCTATACCACTCCTTACAAATGGCCAATCAGTGTCGGGCGAAATTCCTTGTGCTACCCCTGATAATCAATCAGTGCGAACCACATCTGGTCCTTTGGGTCCTCCAGAAAAGCATATGCAGTCCCATCCATATGTTGACCCACGGCAGCCAGTTCCTGTGAGAATTGTAGACCCATCGAAGGATTTGAATTCTTATGGCCTTGGGAATGTTGACTGGAAGGAAAGAGTGGAAGGTTGGAAACTGAAACAAGAGAAAAACATAATGCAGATGACAAGTAGGTACACTGAAGGGAAGGGGGACATGGAGGGCACTGGGTCAAATGGAGAAGAACTTCAAATGGCTGATGATGCTAGACAACCTCTGAGTCGTGTCGTTCCTATTCCATCCTCTCACTTGACCCCGTATCGTGTTGTGATCATACTTCGTCTTATTATTCTGGGCTTCTTCTTACAGTACCGTTTGACACACCCTGTGAAGGATGCATACCCCCTGTGGTTAACATCAGTTATTTGTGAAGTTTGGTTTGCTCTTTCCTGGCTTCTGGATCAGTTTCCAAAATGGTCTCCTGTCAATCGTGAGACCTTCCTTGAGAGACTCGCGCTAAGATATGATCGTGAAGGAGAACCATCACAGTTAGCTCCTGTTGATATCTTTGTCAGTACAGTGGATCCACTCAAAGAGCCTCCACTTGTCACAGCAAACACTGTGCTTTCCATACTTTCTGTGGACTACCCAGTGGACAAAGTCTCCTGCTATGTATCAGATGATGGTTCAGCAATGCTTACTTTTGAAGCGCTCTCTGAAACTGCAGAATTTGCAAGGAAGTGGGTGCCCTTTTGCAAGAAGCACAACATTGAGCCAAGGGCCCCTGAATTTTATTTTGCTCAAAAAATAGACTACTTGAAGGACAAGATTAAACCTTCTTTTGTCAAAGAGCGGCGAGCAATGAAGAGAGAGTATGAAGAATTCAAGATTCGGATCAATGCGCTTGTTGCCAAAGCACAAAAGATGCCCGAGGAAGGTTGGACCATGCAGGATGGAACACCATGGCCAGGAAACAATCCCAGGGATCATCCTGGAATGATACAGGTTTTCTTAGGCCACAGTGGAGGTCTTGATACTGATGGCAATGAACTACCACGACTTGTTTATGTTTCTCGTGAGAAGCGACCAGGTTTCCAGCACCACAAGAAAGCCGGAGCCATGAATGCATTGATCCGAGTCTCTGCCGTGCTTACTAATGGAGCATATCTTTTGAATGTCGATTGTGATCACTACTTCAACAACAGCAAAGCTCTCAAGGAAGCCATGTGTTTCATGATGGACCCTGCTTATGGGAAGAAAACATGTTATGTACAGTTCCCCCAACGTTTTGATGGCATTGATTTGCACGATCGATATGCCAATCGCAACATTGTCTTTTTTGACATAAACTTGAAAGGGTTGGATGGCCTCCAGGGTCCGGTCTATGTGGGAACTGGTTGTTGTTTCAATCGGCAAGCTTTATATGGTTATGATCCAGTTTTGACTGAGGCAGATTTGGAACCGAATATTATCATTAAGAGTTGTTGTGGTTCAAGAAAGAAGGGCAGGAACAACAAGTACATCGACAAAAAGAGGGCTGCAAAGAGGACTGAGTCTACCATTCCTATCTTTAATATGGAAGATATTGAGGAAGGTGTTGAAGGATATGATGATGAGAGGTCACTCCTGATGTCTCAGAAGAGTTTAGAGAAGCGCTTTGGCCAATCTCCAGTTTTTATTGCAGCCACTTTCATGGAACAGGGAGGTATTCCACCTTCAACCAATCCTGCTACTCTTCTAAAGGAAGCAATTCATGTCATCAGTTGTGGATATGAAGATAAGACAGAATGGGGCAAAGAGGTGCTTCGATGGGCTTTGGGTTCCATAGAAATCTTGCTTAGCAGGCATTGTCCTATCTGGTATGGCTACAATGGAAGGCTGAAGCTTTTGGAGAGAATAGCATACATCAATACTATCGTCTACCCTATCACCTCAATTCCACTTATTGCTTACTGTATGCTTCCGGCGTTCTGTCTTTTGACTGGAAAGTTCATCATTCCTGAGATAAGCAACTTTGCCAGTATGTGGTTCATTCTCCTTTTCGTCTCCATCTTTGCAACGGGTATTCTTGAACTCAGATGGAGTGGTGTTAGCATTGAAGACTGGTGGAGGAATGAACAATTTTGGGTCATTGGTGGTACTTCAGCTCATCTGTTTGCCGTCTTCCAGGGTCTCTTAAAGGTTCTTGCTGGAATTGATACCAACTTCACTGTGACGTCGAAGGCCAGTGATGAAGATGGGGATTTTGCAGAGCTTTATGTGTTCAAGTGGACTTCTCTCCTCATCCCTCCCACCACTGTCCTTATTATGAATATGGTTGGTATAGTGGCTGGTGTTTCATATGCCATTAACAGTGGTTACCAGTCTTGGGGTCCTCTCTTTGGTAAGCTGTTCTTTGCATTGTGGGTTATTGTTCATTTATATCCTTTCCTAAAGGGTTTACTGGGAAGGCAAAATCGTACACCGACGATTGTCATTGTCTGGTCCATTCTCCTCGCTTCCATTTTCTCCTTGCTCTGGGTGCGAATCGACCCATTCACCTCGGCCTCGACAAAGGCTGCTAACGGTCTTCACACCAGAATTTGTTGTAGGTGTCTTGAAGTTGTATTGACTTGTCTTCCACTTAGAGCCCCAACTTGCATCTGCTTCCGAGCTACCTCCAGCGGGAACGTTGCACTGCTCGAAATGGCACCAGCAGCTGATCCTATTAAAAGGGTTTGA 3681 45.15 MSSQLAIIESTDNYKHLVRSYRQFPSTNDLKFTALRPINTRHVINYKSIQKARGLLSRVEPVRAQWKPVDPVIQRERERERERESSWFRVKFDGDGVLSGGRFEEKKKSISSYLGLPIHFRSASGSESEEIPTRWKQMRDWWLDLTRGMSLFGFATIPIVGHLCGVLICEVEVQMWPKPLKNLNSQTCQICGDTVGLTASGDVFVACNECAFPVCRPCYEYERKDGNQSCPQCKTRYKRHKGSPRVDGDDEEDDVDDIENEFNYVQGSGKTKRQWHGEDVELSTSARHESQQPIPLLTNGQSVSGEIPCATPDNQSVRTTSGPLGPPEKHMQSHPYVDPRQPVPVRIVDPSKDLNSYGLGNVDWKERVEGWKLKQEKNIMQMTSRYTEGKGDMEGTGSNGEELQMADDARQPLSRVVPIPSSHLTPYRVVIILRLIILGFFLQYRLTHPVKDAYPLWLTSVICEVWFALSWLLDQFPKWSPVNRETFLERLALRYDREGEPSQLAPVDIFVSTVDPLKEPPLVTANTVLSILSVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIKPSFVKERRAMKREYEEFKIRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDGLQGPVYVGTGCCFNRQALYGYDPVLTEADLEPNIIIKSCCGSRKKGRNNKYIDKKRAAKRTESTIPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPSTNPATLLKEAIHVISCGYEDKTEWGKEVLRWALGSIEILLSRHCPIWYGYNGRLKLLERIAYINTIVYPITSIPLIAYCMLPAFCLLTGKFIIPEISNFASMWFILLFVSIFATGILELRWSGVSIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFAELYVFKWTSLLIPPTTVLIMNMVGIVAGVSYAINSGYQSWGPLFGKLFFALWVIVHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRIDPFTSASTKAANGLHTRICCRCLEVVLTCLPLRAPTCICFRATSSGNVALLEMAPAADPIKRV 1226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28528236 28538886 - Lsi04G021410.1 Lsi04g02141 662190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02141 1226 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 170 921 - -
Lsi04g02141 1226 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 921 1174 - -
Lsi04g02141 1226 MobiDBLite consensus disorder prediction 309 342 - -
Lsi04g02141 1226 Pfam Cellulose synthase 507 921 IPR005150 GO:0016020|GO:0016760|GO:0030244
Lsi04g02141 1226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 171 261 IPR013083 -
Lsi04g02141 1226 CDD mRING-HC-C4C4_CesA_plant 186 236 - -
Lsi04g02141 1226 ProSiteProfiles Zinc finger RING-type profile. 188 234 IPR001841 -
Lsi04g02141 1226 Coils Coil 605 625 - -
Lsi04g02141 1226 SUPERFAMILY RING/U-box 175 260 - -
Lsi04g02141 1226 PANTHER CELLULOSE SYNTHASE 921 1174 - -
Lsi04g02141 1226 PANTHER CELLULOSE SYNTHASE 170 921 - -
Lsi04g02141 1226 SUPERFAMILY Nucleotide-diphospho-sugar transferases 525 799 IPR029044 -
Lsi04g02141 1226 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 665 802 IPR029044 -
Lsi04g02141 1226 Pfam Zinc-binding RING-finger 178 255 IPR027934 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02575 Lsi-Chr2:32203362 Lsi04g02141 Lsi-Chr4:28528236 0 dispersed
Lsi04g02141 Lsi-Chr4:28528236 Lsi11g00826 Lsi-Chr11:10233152 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02141 K10999 - csv:101205724 1989.16