Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02145 ATGGAAACGGTAGGCGAACTTTGCCCGAGGGCTAAAATTCCCCACTCAATTCGCTTTATGATTATTCAACTTAATCGGATTTTTTCCCGCTTGATTTCGCTAATGATTTCAACGACCCAGATTCTCCATTTTCATTTCTGTAATGGTACACCCTCCAACTGTTCGACGAAATGCTGCAATGAAGTTCCAGGCTATGGCAGACTTGCTCGGAGTTCAACTAGGGATGACTTCCGAGTCCTGATTATGGCGTGTAAGCATTTGCAGAGGCTGTTCTTCATCTCTCGCCGAAAGCATCTCAATAACACGAGATTTGGAGCTTTGCAATCAAATTCTATGTTGTATCATTCCGCAGAGCACTCCTCCGCTGATCAAGAGGTGTTACCATCTGAATGGTACGAGAATGCTTTTCGGAAGATAAAAAATTTGAGCTGCTCGTTGAAGAATGTGGATTTGATCGATGGACGACTTTTTAATGTTAATGATGATTCGACCATTATCGACGAGCGAATTGAACAGAGAATGCATACTTTCAAGTCCCTTGTAAGGGTCTTGATTGGTTCTCCATCGGCTCAGAGGAGAATAACAGAGATGGCCGTATCGAGTTCTATAGATTGTCAGCCTCACGCATGGTTCAGAAATTCGAGTGAACGAGAGCCAATTGTTGTTGATTCACTCACCAAGGTCAGCAACTTCCTCAACGTCTCTGCCCAACAAAGGAAACTGGTGCGCCACAACATATGCCCACAGGTTACACAACATCACATTTGGACTGGTGCATTGGATCACATGCTGAAAGAGTTAAATTTGGAGTTGGATCCATTATCTCATCAGTCAACCAACAAAGGGATCAAAATGGGGCATCAGATAGTTTCAAGTTGCCTAAAGTTTTTGAATGATGCTACTACCAATTCAAATGCTCACTTCACTTCATGGATGCGGCCAGCGCCATTACGAGCAATTGTCGATTCGTCAGCACCGCCAAGATGGGAAGACATGCTCGAGATGTTCACCGATCTGATTGGCTGTCTGAAAGACGAGAAATTTTTGGTCCATTATGTGACAAAGCTTGAAGTTATGAAAGAGGGGCTTTCCCAGATCAAAGATGTATTGACTGATAAAAGCATTGGATACAAGGAAGCCAGTCATCAAGAAAGCTTAGTGCAGAAGAAGCTTTCAAAGACATTGGGCCACTCATCCAGGGATATTGAAGTGGATCTTTCTGGTGGGTTGTTGAAGGCTGATGGGAATGACAAGTTTTTGTTGTTCATGGGGAGGGTTTTGAGTTCTGATGAAGAGAAAATTGTTTGGAATGGGGTGAGGCAGCTTGATAGAGTTATGGGGCTTTTTAAATTTGTTTGGGAAATAGCTGGAATGATGGGAGAATTGGAATTGCAAGGCCATTTATTTTGTGTTGGGGCTGAGGATAGGCAGCTTATGTCTGTCGACATAAATCGACCGACGATGGTTCTTTCAGCGCCGGTGAAGGCACCGGAAGCATTTCCAGGTTCGCCGTCGATTTCTGGCCGAGAGAGCTTCTTCTTTCGCCAGCCCTTTCCATCCAATTTTAGTCTTCTGCGTCTCCCTCCGGTTCGTCACACTCTATCGCTTACATTTGCTCGCCGTCGGAACCAAAATTCATCAGTCAGTCCGTCTTCATCGTCTTCGAAGAAAAAGAAGAGAAATTTGATTCCAAAAGAAGCTAGGGGCGAGGAGGAGGATGTAGAGGAGGATGCTCTTGAGTTGTTGTTTAGTCAACTGGAAGAAGATCTCAAAAATGACGCCCCTTCCTTGGATGACGGTGAAGAGGATGAATTTAGCGAAGAGCACCTTGCCAGACTAGAGCGCGAGTTAGGGTTAGCACTTGGCATCGATGTTGACGATGAAGAAGAAGAAGAAACAGAAAATGAAGAAGTTCTCGAGGATACTGAAGAAGAGGAAATGCCTGTAAAACTTAAGAACTGGCAACTTCGTCGACTAGCCTCGGCTTTGAAGAAAGGCCGCCGTAAAACTAGCATCAAGAGTCTTGCTGCGGAGCTTTGTCTCGATAGGGCCATCGTTCTTCATTTGCTTCGGGAACCACCACCTAGTCTTCTGATGTTGAGTGCTACTCTTCCAGACACTCCTACACCATCAATTCGAGAAACTAAAACATTACATACTGATGAAGAACTCATAGTAGTAGACACTGCAAAAGAGGCAGAAGGGGTGACGGTGCCTGTTCATGTCATGCAACAGAGTTGGGCTGCTCAAAAGAGACTGAAGAAGGTTCAGATTGAAACTCTTGAAAGTGTTTATAGAAAAACAAAGCGGCCCACTGTAAGTATAGTTTCCTCCATCATTTGTCGTCAAAAGAAGTCGATAAAATCTTTAAATTCCGAGTATCTGATTCCTGTGCCAAATGCGATGATTAGTAGCATCGTCCAAGTGACAAATTTGCCTCGCAAAAGAATAGTGAAATGGTTTGAAGATAGGCGAGTTGAAGATGGGGTTCCTGATCAACGCGTGCCTTATGATCGGTCTGCTCCTAAATCTGTTTGA 2538 44.21 METVGELCPRAKIPHSIRFMIIQLNRIFSRLISLMISTTQILHFHFCNGTPSNCSTKCCNEVPGYGRLARSSTRDDFRVLIMACKHLQRLFFISRRKHLNNTRFGALQSNSMLYHSAEHSSADQEVLPSEWYENAFRKIKNLSCSLKNVDLIDGRLFNVNDDSTIIDERIEQRMHTFKSLVRVLIGSPSAQRRITEMAVSSSIDCQPHAWFRNSSEREPIVVDSLTKVSNFLNVSAQQRKLVRHNICPQVTQHHIWTGALDHMLKELNLELDPLSHQSTNKGIKMGHQIVSSCLKFLNDATTNSNAHFTSWMRPAPLRAIVDSSAPPRWEDMLEMFTDLIGCLKDEKFLVHYVTKLEVMKEGLSQIKDVLTDKSIGYKEASHQESLVQKKLSKTLGHSSRDIEVDLSGGLLKADGNDKFLLFMGRVLSSDEEKIVWNGVRQLDRVMGLFKFVWEIAGMMGELELQGHLFCVGAEDRQLMSVDINRPTMVLSAPVKAPEAFPGSPSISGRESFFFRQPFPSNFSLLRLPPVRHTLSLTFARRRNQNSSVSPSSSSSKKKKRNLIPKEARGEEEDVEEDALELLFSQLEEDLKNDAPSLDDGEEDEFSEEHLARLERELGLALGIDVDDEEEEETENEEVLEDTEEEEMPVKLKNWQLRRLASALKKGRRKTSIKSLAAELCLDRAIVLHLLREPPPSLLMLSATLPDTPTPSIRETKTLHTDEELIVVDTAKEAEGVTVPVHVMQQSWAAQKRLKKVQIETLESVYRKTKRPTVSIVSSIICRQKKSIKSLNSEYLIPVPNAMISSIVQVTNLPRKRIVKWFEDRRVEDGVPDQRVPYDRSAPKSV 845
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28564684 28574086 - Lsi04G021450.1 Lsi04g02145 662194

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02145 845 MobiDBLite consensus disorder prediction 541 576 - -
Lsi04g02145 845 MobiDBLite consensus disorder prediction 627 644 - -
Lsi04g02145 845 Coils Coil 625 645 - -
Lsi04g02145 845 PANTHER EXOSOME COMPLEX EXONUCLEASE 92 478 - -
Lsi04g02145 845 MobiDBLite consensus disorder prediction 541 557 - -
Lsi04g02145 845 MobiDBLite consensus disorder prediction 627 646 - -
Lsi04g02145 845 Gene3D - 747 828 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02145 - - - csv:101217803 622.854
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g456 Blo01g01378 . Bda01g00735 . . Bpe02g00571 . . . . . . Car09g00413 . . . Cpe06g00349 . . . . . . . Cla05g01751 Cam05g1864 Cec05g1876 Cco05g1940 Clacu05g1855 Cmu05g1736 Cre05g1868 Cone4ag1803 Cone7ag1711 . . Lsi04g02145 Csa03g04348 Chy04g00354 . . . . . . . . . . . Cmo09g00477 Cma09g00470 . . . . . Bhi09g02268 . . . . Mch11g0572 . . . . . . . . . . . Cme04g00393
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010805 0 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02145 Lsi_Chr04 FPKM 25.24 25.305799 20.704762 23.526634 18.075365 21.142941 17.255695 17.936533 18.61264 19.714993