Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02148 ATGTCGAAGCAGAAGTCGAAGAAGATGGGATTATTAGGGAGATCAATGTGCGGGACAGAGAAAGAGCGAGAGATTGAGCAATTATCGAGAGACGACGGCAGCCAATACAGTCTCACCGGTGGAATCCTTCCGCCGCTTGGCGTCAATGGCCGAAATAATCGAAGAGTCAAACTCCGTCGTCATATAATTTCGCCATTCGATTACAATTACAGGTTTTGGGAAACGTTTTTGATATTTCTAGTACTCTACACCGCCTGGGTTTGTCCGTTTGAGTTCGGGTTCATCCCTTCGCCTCACGGAGCTCTTGCTGTAATTGATAACGTAGTAAATGGAATTTTCGCCATTGATATAGTTTTAACCTTCTCCGTGGCGTATTTGGACAAAACTACTTACCTGCTCGTGGATGATCGGAAGCTGATTGCTCTGCGTTATGCGAAAACTTGGTTGGTTCTGGACGTTGTGTCAATTGTTCCGTCGGAAATGGCTCGTGCCATTCTTCCTCCTTCTCTTCAGACTTATGGCTACTTCAATATGCTTCGTCTATGGCGTCTTCGAAGAGTCAGTTCCATGTTCGCCAGGTTGGAAAAGGACAGGAACTTCAACTATTTCTGGGTTCGATGCGCAAAGCTTATATTTGTGTGTCTGTTCGCGGTTCATTTTGCTGGGTGCTGCTTCTATCTAATGGCTGCAAACTATCCAGACCCAAAAAGGACATGGTTTGCCTTATCCATCGAAGATTTTCATAACGCAAGTTTGCGAGTGCGTTATGTCACTTCCATTTACTGGTCAATTGTCACAATTACAACCACTGGCTATGGCGATTTGCATCCTGTAAATGATCAAGAGATGACTTTTGGCATCTGTTACCTGTTCTTTATTCTCGGGTTGCAAGCTTATCTGATTGGAAATATGACTAACTTGGTCGTCCATGGCACCAGCCGAACCAGGAAATTTAGGGACACAATTCAAGCTGCCTCAAATTTTGCCAATAGAAATCAACTACCTGTTCGGCTTCAAGAACAGATGCTTGCTCATCTATGTTTAAAATTCAGAACTGATTCAGAGGGATTACAACAACAAGAGACAGTTGATTCTCTTCCAAAAGCAATCAGATCTAGCATCGCTCACCATCTCTTCTATTCACTTGTTGATAGTGCTTATTTGTTTAATGGAGTATCAACAGACTTGATTTTTCAACTGGCCGAGTACTTCCCTCCCAAAGAAGATATCATCTTGCAGAATGAAGCACCAACAGATTTCTATATAGTTGTCACCGGCACTGCGGATCTTATTATACAAAGAAACGGAATGGAAGAGATCGTCGGTGAAGCAAAGATGGGAGATGTCATCGGTGAGATAGGTGTGCTTTGTTATCAACCACAATTGTTTACAGTTCGAACCAGCCGTTTGAGTCAATTGCTACGTTTGAATCGCTCCTCGTTTTTTAACTTGGTACAAGCAAGCGTTGGGGATGGGACAATCATAATGAACAATCTCCTTAAGCACCTGAAGGAGATAAAAGACCCTATGATGGAGGAAATTCTGCAAGAAACAGAACAGGCATTGACTAGGGCCGGAATGGAAATGCCTCTCAATTTATACTATGCCGCAGACAGTGGCGATGATTTATTGTTGCATCAATTGCTAAAGCGGGGTTCGAATCCAAATGAAGTAGATGGCAAAGGCGGGAAGACAGCACTTCATATTGCAGCAGCTAAAGGAAACGAAGACTGCGTAATTCTACTCCTAGAGTATGGGGCAGACCCGAACCGAAGAGACTTTGAAGGAAATGTTCCCCTGTGGCAAGCGATACAAGGGAAGCATGAGACTATAGTCAAGCTTCTAATGGACAACGGTGCCAATATTTCTTCAGGCGACGTTGCCCAGTTTGCTTGCACCGCAGCAGAGCAGAACAGCATAGATATGCTCAAATCCATCATCCAATGTGGTGGAGACGTAACGCTACCAAGAAGCAACGGGACAACAGCTCTTCACATGGCAGTATGTGAAGGAAACAGTGAAACAGTGAAGTTCCTTTTAGATCAGGGGGCTGACATTGATAAGGCAGATGTTCATGGATGGACTCCTCGAGGATTGGCAGATCATCAAGGCCATGAAGAGATAAAAGAATTATTCTCTGTCAAGCAAGCTGAGAATACATCATCTGTTGTCCACATTCCACAAAATCCTGAATCCAATTATTACCTACGGAAGTACCAGAGTGAATCAAACATGCCGCCACGGTTTTCCCAAGACTCGTGCACGACTCCTGTTCGAGAATCAAATTGTTCTGATATGCCACCTAGAAGGAGAAGGAGCAATAATTATCGAAACTCACTGGTTGGGTTCATGACAACTAACAATACCGGTGAAAGGGACGTTCTACAACATGCATCACTTAGTTTTAGCAATAGCCGAAGCATGAAAACGACTTGCCAGGCAAGAGTTATTATCAGTTGCCCTGAAACGGAACAGGCTACTGGAAAGCTAGTGTTTTTACCCAAATCCATCCAAGAACTACTTGAAATAGGTTCCCAAAAATTTGGGATTTCTGTAGCAAAGATTTTAACTCAAGAAGGAGCTGAAGTTGAAGATACGGACCTTATCAGAGACGGCGATCACCTTGTACTTGTTGGTGATGCTGGTGCTCCCCAGTAG 2658 43.79 MSKQKSKKMGLLGRSMCGTEKEREIEQLSRDDGSQYSLTGGILPPLGVNGRNNRRVKLRRHIISPFDYNYRFWETFLIFLVLYTAWVCPFEFGFIPSPHGALAVIDNVVNGIFAIDIVLTFSVAYLDKTTYLLVDDRKLIALRYAKTWLVLDVVSIVPSEMARAILPPSLQTYGYFNMLRLWRLRRVSSMFARLEKDRNFNYFWVRCAKLIFVCLFAVHFAGCCFYLMAANYPDPKRTWFALSIEDFHNASLRVRYVTSIYWSIVTITTTGYGDLHPVNDQEMTFGICYLFFILGLQAYLIGNMTNLVVHGTSRTRKFRDTIQAASNFANRNQLPVRLQEQMLAHLCLKFRTDSEGLQQQETVDSLPKAIRSSIAHHLFYSLVDSAYLFNGVSTDLIFQLAEYFPPKEDIILQNEAPTDFYIVVTGTADLIIQRNGMEEIVGEAKMGDVIGEIGVLCYQPQLFTVRTSRLSQLLRLNRSSFFNLVQASVGDGTIIMNNLLKHLKEIKDPMMEEILQETEQALTRAGMEMPLNLYYAADSGDDLLLHQLLKRGSNPNEVDGKGGKTALHIAAAKGNEDCVILLLEYGADPNRRDFEGNVPLWQAIQGKHETIVKLLMDNGANISSGDVAQFACTAAEQNSIDMLKSIIQCGGDVTLPRSNGTTALHMAVCEGNSETVKFLLDQGADIDKADVHGWTPRGLADHQGHEEIKELFSVKQAENTSSVVHIPQNPESNYYLRKYQSESNMPPRFSQDSCTTPVRESNCSDMPPRRRRSNNYRNSLVGFMTTNNTGERDVLQHASLSFSNSRSMKTTCQARVIISCPETEQATGKLVFLPKSIQELLEIGSQKFGISVAKILTQEGAEVEDTDLIRDGDHLVLVGDAGAPQ 885
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28580866 28588095 + Lsi04G021480.1 Lsi04g02148 662197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02148 885 PRINTS EAG/ELK/ERG potassium channel family signature 256 273 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lsi04g02148 885 PRINTS EAG/ELK/ERG potassium channel family signature 300 309 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lsi04g02148 885 PRINTS EAG/ELK/ERG potassium channel family signature 117 126 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lsi04g02148 885 PRINTS EAG/ELK/ERG potassium channel family signature 106 116 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lsi04g02148 885 PRINTS EAG/ELK/ERG potassium channel family signature 83 90 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lsi04g02148 885 PRINTS Ankyrin repeat signature 675 689 IPR002110 GO:0005515
Lsi04g02148 885 PRINTS Ankyrin repeat signature 563 578 IPR002110 GO:0005515
Lsi04g02148 885 MobiDBLite consensus disorder prediction 745 774 - -
Lsi04g02148 885 Gene3D - 530 714 IPR036770 -
Lsi04g02148 885 PANTHER POTASSIUM CHANNEL AKT1-LIKE ISOFORM X1 7 883 - -
Lsi04g02148 885 Pfam Cyclic nucleotide-binding domain 403 487 IPR000595 -
Lsi04g02148 885 ProSiteProfiles KHA domain profile. 815 885 IPR021789 -
Lsi04g02148 885 ProSiteProfiles Ankyrin repeat profile. 659 691 IPR002110 GO:0005515
Lsi04g02148 885 ProSiteProfiles Ankyrin repeat profile. 595 627 IPR002110 GO:0005515
Lsi04g02148 885 Pfam KHA, dimerisation domain of potassium ion channel 815 877 IPR021789 -
Lsi04g02148 885 SUPERFAMILY Voltage-gated potassium channels 65 309 - -
Lsi04g02148 885 Pfam Ion transport protein 71 315 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lsi04g02148 885 SUPERFAMILY Ankyrin repeat 533 712 IPR036770 -
Lsi04g02148 885 SMART ANK_2a 659 688 IPR002110 GO:0005515
Lsi04g02148 885 SMART ANK_2a 595 624 IPR002110 GO:0005515
Lsi04g02148 885 SMART ANK_2a 626 655 IPR002110 GO:0005515
Lsi04g02148 885 SMART ANK_2a 528 557 IPR002110 GO:0005515
Lsi04g02148 885 SMART ANK_2a 562 591 IPR002110 GO:0005515
Lsi04g02148 885 PANTHER POTASSIUM CHANNEL AKT1 7 883 IPR045319 GO:0005249|GO:0006813
Lsi04g02148 885 SUPERFAMILY cAMP-binding domain-like 313 503 IPR018490 -
Lsi04g02148 885 ProSiteProfiles Ankyrin repeat region circular profile. 595 626 - -
Lsi04g02148 885 SMART cnmp_10 388 500 IPR000595 -
Lsi04g02148 885 ProSiteProfiles Ankyrin repeat profile. 562 594 IPR002110 GO:0005515
Lsi04g02148 885 ProSiteProfiles Ankyrin repeat region circular profile. 659 690 - -
Lsi04g02148 885 MobiDBLite consensus disorder prediction 745 762 - -
Lsi04g02148 885 Pfam Ankyrin repeats (3 copies) 634 705 IPR002110 GO:0005515
Lsi04g02148 885 Pfam Ankyrin repeats (3 copies) 533 624 IPR002110 GO:0005515
Lsi04g02148 885 Gene3D - 71 309 - -
Lsi04g02148 885 ProSiteProfiles cAMP/cGMP binding motif profile. 403 485 IPR000595 -
Lsi04g02148 885 Gene3D Jelly Rolls 356 523 IPR014710 -
Lsi04g02148 885 ProSiteProfiles Ankyrin repeat region circular profile. 562 593 - -
Lsi04g02148 885 CDD CAP_ED 388 486 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02148 Lsi-Chr4:28580866 Lsi06g00933 Lsi-Chr6:19182245 0 dispersed
Lsi04g02148 Lsi-Chr4:28580866 Lsi01g00206 Lsi-Chr1:1936082 7.35E-06 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02148 K21867 - csv:101217334 1451.03