Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02151 ATGTCCGCCTCGAACATGGCGGCATCTCTAAGCTCTTGGTCCCACGCGCTCGTCAGAATCTCCCCTTACACCTTCTCCGCCGTGGGCATTGCCATAGCCATCGGCGTCTCTGTCCTCGGAGCCGCCTGGGGAATCTACATAACCGGAAGCAGTTTGATCGGTGCTGCAATCAAAGTTCCGCGTATTACCTCGAAGAATCTAATTAGTGTAATTTTCTGTGAAGCTGTGGCCATATATGGTGTCATTGTGGCCATCATTCTACAAACAAAACTGGAGAGTGTTTCAGCCTCTCAAATTTATGCTCCTGAGTCTCTAAGAGCAGGATATTCAATTTTTGCCTCTGGGATTATCGTCGGCTTTGCCAACCTAGTTTGCGGGTTCGATCCTTCATCTCAAAACATTTTCATTGGGATTATTGGCAGCAGTTGTGCATTGTCTGATGCCCAAAACTCATCCCTTTTTGTAAAGATTCTTGTGATCGAGATTTTCGGAAGCGCGCTCGGGTTATTTGGTGTAATTGTAGGAATAATCATGTCTGCTCAAGCTACATGGCCTGCAAAGGCAGTTTAG 570 46.84 MSASNMAASLSSWSHALVRISPYTFSAVGIAIAIGVSVLGAAWGIYITGSSLIGAAIKVPRITSKNLISVIFCEAVAIYGVIVAIILQTKLESVSASQIYAPESLRAGYSIFASGIIVGFANLVCGFDPSSQNIFIGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQATWPAKAV 189
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28604995 28606666 - Lsi04G021510.1 Lsi04g02151 662200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02151 189 SUPERFAMILY F1F0 ATP synthase subunit C 21 90 IPR035921 -
Lsi04g02151 189 CDD ATP-synt_Vo_c_ATP6F_rpt1 25 87 - -
Lsi04g02151 189 SUPERFAMILY F1F0 ATP synthase subunit C 104 179 IPR035921 -
Lsi04g02151 189 CDD ATP-synt_Vo_c_ATP6F_rpt2 107 178 - -
Lsi04g02151 189 PRINTS Vacuolar ATP synthase 16kDa subunit signature 66 89 IPR000245 GO:0033179|GO:0046961|GO:1902600
Lsi04g02151 189 PRINTS Vacuolar ATP synthase 16kDa subunit signature 39 65 IPR000245 GO:0033179|GO:0046961|GO:1902600
Lsi04g02151 189 PANTHER V-TYPE PROTON ATPASE 21 KDA PROTEOLIPID SUBUNIT 6 186 - -
Lsi04g02151 189 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 6 186 - -
Lsi04g02151 189 Pfam ATP synthase subunit C 29 87 IPR002379 GO:0015078|GO:0033177|GO:1902600
Lsi04g02151 189 Pfam ATP synthase subunit C 112 178 IPR002379 GO:0015078|GO:0033177|GO:1902600
Lsi04g02151 189 Gene3D - 23 185 IPR035921 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02151 Lsi-Chr4:28604995 Lsi04g02391 Lsi-Chr4:31039642 7.11E-17 dispersed
Lsi04g02151 Lsi-Chr4:28604995 Lsi08g01161 Lsi-Chr8:20269244 2.89E-106 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02151 K03661 - csv:101205012 303.523