Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02170 ATGTCGACACCAGTGTCCGAAACAAGGTCGCCGATACCTTTGCTGTTCCGGCGGCACTCAAGTGGCGAAATAAAGAACTTAACGTCGGTTTCCAGCAGCCTCTTGCCGGCGTTTGGAACAATTGTGAACGATGGATACTCGCACCTGAACAAGTTCGTTATAGTTCCGTATGACAGAAGATATCGGTGGTGGCAAACTTTCCTGGTAGTGCTAGTGGTGTACTCAGCGTGGGCATCTCCCTTTGAACTTGCCTTCAAGAAAGTGGCAACTGGGTCTCTTTTACCCGTTGATTTGGTGGTGGATGCATTCTTTGCCCTTGATATTGTGTTGACCTTTTTCGTCGCGTACTTGGATAAAGACACCTATCTCCTTGTTGATGATCATAAGAAGATAGCTGTACGTTACCTTACAAGCCTGTGGTTCCCCATGGACGTAGCATCCACTCTTCCATTTCAGGTAATATACAGAATTTTCACTGGAGAGATGCACCGCAGTGAGGCCTTCGGCTTCCTCAACTTACTTCGGTTCTGGCGACTAAGGCGTGTTAGTGAACTCTTCACAAGGCTGGAGAAAGACATACGCTTTAGTTACTTTTTTACAAGACTCACCAAACTAATTTGTGTTACACTGTTAGCAGTTCATTCAGCTGGTTGTTTCTACTACTGGTTAGCAGTTCATCATAAAGATTCAGCAAACACATGGATTGGACTTGAAGTCGAAGAGTTTAAGAACAGAAGTATTTGGCTTGGGTACACCTATTCGATATATTGGTCCATTGTCACACTTGCTACTGTTGGTTATGGGGACTTGCATGCAGTCAATCTAGGGGAGAAGATTTTTAGCATATTCTACATGCTATTCAACATTGGCCTCACATCTTATTTGATAGGAAACATGACAAATCTCATTGTTCACGGTGCTATCCGAACATTTATCATGAGGGATTCCATAAATGAGATATTGCGTTATGGAAGCAAGAATAGACTGCCAGAAGGCCTGAAAGATCAAATGTTGGCGCACATGCAACTCAAGTTCAAGACAGCAGAGTTGAAGCAAGAAGAGGTGTTGGAGGATTTACCTAAAGCAATCAGATCCAGTATTGCCCAGCACCTTTTCCGTCATACCGTGGAGAATGCATACTTATTCAAGGGGCTCTCTGAAGACCTTATCGTCCAATTGGTGTCTGAGATGAAAGCAGAGTACTTTCCACCTAAAGTTGACATTATAATACAAAACGAGATACCAACAGATTTCTACATTTTGGTGTCTGGAGCAGTGGATGTGATCTCGTACAGGACTGGAACTGAACAGATTTTGTCAAAGCTGGAATCTCCACAAATGGCAGGGGAAATTGCTGTGATGTTGAATATCCCACAGCCATTTACAGTGAGAACTAGAAGACTCTCCCAAGTCATCAGGATCAGTCATCATCATTTTAAGCAACTGTTACAACCAAACAATGAAGATGGAAAAACCATTTTCTCCAAGTTCACTGAGGGCACAGAACCAAACGAGACACAAAATCAGAGAGTACCAAATCATCATGAAGATCAAAAAATGGAAGGATCTGGACCATTGCCACCTACAGTTCGCATAAGGGTGATAATTCACGAGCACCATCCAGATGAAAGTACAAAAGATGGCAACAGTAAGGGAAAACTGGTACTTCTGCCTGAGTCAATGGAAGAACTTTTTGGATTGGCAGAGAAAAGATTTGGCAAGAGAGGGAGCTCAATTCTCATGGCTGATGGCTCTAAAGTAGAAGACTTGAATGTTTTAAGAGAGGGTGATCATTTGTTCTTTGTTTGA 1809 42.84 MSTPVSETRSPIPLLFRRHSSGEIKNLTSVSSSLLPAFGTIVNDGYSHLNKFVIVPYDRRYRWWQTFLVVLVVYSAWASPFELAFKKVATGSLLPVDLVVDAFFALDIVLTFFVAYLDKDTYLLVDDHKKIAVRYLTSLWFPMDVASTLPFQVIYRIFTGEMHRSEAFGFLNLLRFWRLRRVSELFTRLEKDIRFSYFFTRLTKLICVTLLAVHSAGCFYYWLAVHHKDSANTWIGLEVEEFKNRSIWLGYTYSIYWSIVTLATVGYGDLHAVNLGEKIFSIFYMLFNIGLTSYLIGNMTNLIVHGAIRTFIMRDSINEILRYGSKNRLPEGLKDQMLAHMQLKFKTAELKQEEVLEDLPKAIRSSIAQHLFRHTVENAYLFKGLSEDLIVQLVSEMKAEYFPPKVDIIIQNEIPTDFYILVSGAVDVISYRTGTEQILSKLESPQMAGEIAVMLNIPQPFTVRTRRLSQVIRISHHHFKQLLQPNNEDGKTIFSKFTEGTEPNETQNQRVPNHHEDQKMEGSGPLPPTVRIRVIIHEHHPDESTKDGNSKGKLVLLPESMEELFGLAEKRFGKRGSSILMADGSKVEDLNVLREGDHLFFV 602
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28747420 28756118 - Lsi04G021700.1 Lsi04g02170 662219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02170 602 MobiDBLite consensus disorder prediction 498 526 - -
Lsi04g02170 602 Pfam Cyclic nucleotide-binding domain 401 484 IPR000595 -
Lsi04g02170 602 Gene3D Jelly Rolls 349 521 IPR014710 -
Lsi04g02170 602 Pfam KHA, dimerisation domain of potassium ion channel 533 601 IPR021789 -
Lsi04g02170 602 PANTHER POTASSIUM CHANNEL, VOLTAGE-DEPENDENT, EAG/ELK/ERG-RELATED 1 62 - -
Lsi04g02170 602 PANTHER POTASSIUM CHANNEL, VOLTAGE-DEPENDENT, EAG/ELK/ERG-RELATED 504 601 - -
Lsi04g02170 602 ProSiteProfiles cAMP/cGMP binding motif profile. 381 500 IPR000595 -
Lsi04g02170 602 SUPERFAMILY cAMP-binding domain-like 310 493 IPR018490 -
Lsi04g02170 602 SMART cnmp_10 381 498 IPR000595 -
Lsi04g02170 602 ProSiteProfiles KHA domain profile. 533 602 IPR021789 -
Lsi04g02170 602 Pfam Ion transport protein 61 303 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lsi04g02170 602 CDD CAP_ED 381 486 IPR000595 -
Lsi04g02170 602 Gene3D - 63 305 - -
Lsi04g02170 602 PANTHER POTASSIUM CHANNEL, VOLTAGE-DEPENDENT, EAG/ELK/ERG-RELATED 62 499 - -
Lsi04g02170 602 SUPERFAMILY Voltage-gated potassium channels 56 304 - -
Lsi04g02170 602 PRINTS EAG/ELK/ERG potassium channel family signature 251 268 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lsi04g02170 602 PRINTS EAG/ELK/ERG potassium channel family signature 295 304 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lsi04g02170 602 PRINTS EAG/ELK/ERG potassium channel family signature 97 107 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lsi04g02170 602 PRINTS EAG/ELK/ERG potassium channel family signature 108 117 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lsi04g02170 602 PRINTS EAG/ELK/ERG potassium channel family signature 277 288 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lsi04g02170 602 PANTHER POTASSIUM CHANNEL AKT1 1 62 IPR045319 GO:0005249|GO:0006813
Lsi04g02170 602 PANTHER POTASSIUM CHANNEL AKT1 504 601 IPR045319 GO:0005249|GO:0006813
Lsi04g02170 602 PANTHER POTASSIUM CHANNEL AKT1 62 499 IPR045319 GO:0005249|GO:0006813
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02170 Lsi-Chr4:28747420 Lsi06g00933 Lsi-Chr6:19182245 7.64E-10 dispersed
Lsi04g02170 Lsi-Chr4:28747420 Lsi03g01408 Lsi-Chr3:25030619 9.08E-10 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02170 K21867 - csv:101215177 1093.57