Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02172 ATGGCTGATGCTCTGCCGTCGTGTCGGTCACCGGCGGCGACGAGGGCCGCCGGAGAGAAGGAGTGGTCGGCGAAAGAAGAGAATGTCGATGATTCAGACGTAAATTTTGAAGCCGAGGTTTCGAAGTTACGAGGTCAATGGGAGTTGGCATCGGTTCTGAACTTCTTGAATGTTTTCGAACCGGTAATTGGGAAAAGCTTGAGGATATCAGCGGAAGAGATTGAAAAGGGTTTAATAGAGCCTGAAAGTTCATTAGCTGAACTCCACATTGCACTTTTGAAGGGCATACCACCTGTGAGTAAAATGTTAAATGGTTCTAGTGCATGGGTGACTGTACTTTGTAAGAAGCTTGCCCCATGGTGGCCTTGGGTTGCTGAAGGGGAGATTCCAATAAAGGCTTTTAAAGGAGAGGAGATATCAAATTACAAGAAACTTGATCCTACAAAACGCTTGCTGCTTCTAAAAGCTCTATGTGAAATTCGAGCAGATGTATTGTATGATGGGAATCCATTTGTTGGTTATAGACTATACAGGGAAGTTTTCAAATGCGATACAAAGATAAAAGGTAAACAGAAGGGAAGTATGCCCCTTCCAATGTTTAGCACTCAATGGGAAACAATGGCCACAAATCTCGAGGAATTTCATAAAGTTAAAGACAACTTTTTATGCAGCAAAATCACCAGTGAAGTTTCTGTTGGAAGGAAAATTGAATCTGATGCCATTCCCGTTCTTGAGAAACTCCAGAAGAAGAAGGAGAAGTCATTGAAGCGTAAGCATAGGGAGGACAAGCTCTTGAATGACTTTAACAAGTCCTGTATAGTTGGAGTTACACGCACTTGTCGCGTTCGTGCACCCGTGAACTATACATTCGAGGAGTACAATCGAGCAATTGATAATGCCATACGGCTATCTAGGAACGTGAAAAACACTGATGAAAAGGAGCAAGGGATGCATCACAAGCGCAGTAGAAAAGATGTTTCTACTAGTGAGAATCCTGACACAATGACAAAATCAGACGATGTCTCTGGAAATAGTGACGAGAGCAGCAATAACGACACTGGAAGCAACACGAGCAAAGAAGCTGATCTTGACAGTGCTGATGACATTGATAACAAGGATTATGAGGGCAAAGATGATGGCGACAACGATTCGGATTCTGATTATTCCGATGCAGAAGAGAAGAATGAAATGATACATTCTGAAAGAGAGACCGATGTCGAACAGCCTGCAGCGGTATGCAGTAAGAGGCTGGATAGAAGCAGTATGAGCAATGAAAATAGAAAGGTGGGTGCCAAAAGTAGGCTGAGACAAAGACCAGTTCTTAACTCTGCTCTTGATGGTGTTACGCCGTCGCCGTCGCCGTCCGCCTCAGCCCTCTCTCTCTGTTTCGACTGCCGGCGCCGACAGCCCTCTCCGGCACAGCCCCCACGGCGATCCTACGATTTTCATTACCTTTACCAAACCGACCGGTTCGGCTCGAAGTTTGACCCAAACCGAATGAACCGAACCCCGAGTATCGCCCCTACCATGTCCGCTTCATCCGAAACTCCGATTGATGAGCCGCCCTCCGCCGATGACGAATCTTCCAAAGCCGTCAGTAAGAAGGCGGCCAAGAAGGAGGCTGCCAAGCAGGAAAAGCTCCGCCGTCGCCAAGAAGCCGCTGCTGAAGCTGCTATTTCGTCCCTCAATGTCGAGGAAGACCCGCTTTCCGCTAACTATGGCGATGTACCACTATCCGATCTCCAATCCAAGGAGGCTAAGGATATTAAAAACTGGACTCAGGTCGGCTCTTTGACGGGGGAGCTTAAAGACAAGTATGTGATTCTGCGGGGTCGCGTTCAGACGATCCGTGCTGTTGCCAAGAAAATGGCGTTTTTGGTGGTGAGAGAAAGGGGATTCACCGTACAATGCGTCGTGTCCGAGCAGCCGGAGCTCGTTAGTCGCCAGATGGTGAAGTATGTCTGTGGATTGAGCCGTGAGTCCATCGTCGACGTTGAAGGAGTCGTGTCCGTGCCTAATGTTGCCATTAAAGGTGCTACGCAACAGGTGGAAATTCAAGTGAGGAAAGTATATTGCATCAGTAAGGCAATGCCGACTCTGCCTATAAATATTGAAGATGCTGCCCGTAGTGAAGCTGAAATTGAGAAGGCGTTGCAGGCTGGTGAGCAACTAGTACGTGTCAATCAGGATACGCGGTTGAACTACAGAGTCCTTGATATGCGAACTCCAGCTAACCAAGGAATTTTTCGCATTCAATCTAAAATTTCTGATTTTGATTACAAAGGCCAACCCGCTTGCCTGGCTCAGTCACCTCAGTTACATAAGCAAATGGCAATCTGTGGTGACTTTGGGCGCGTATTTGAGATTGGCTCCGTTTTTAGAGCAGAGGACTCATACACACACAGACATTTATGTGAATTTGTAGGACTTGATGTTGAAATGGAGATCAAGGCTCATTACTCTGAGGTGATGGACGTTGTGGACCGATTATTCGTCTCAATTTTTGACAGTTTGAATCAAATCTGTAAGGCGGAGCTTGAAGCAGTTAATAGACAGTATCCCTTTGAACCTTTGAAGGTGAACTTTATTGATTTCTTACTTCGTAAAAATCTTCATAGCACGGACCAAAGTGTTAGACATTCTTTTGGTTATGGATTTGTGCCAATAGATATGTACAATTACTTGCGAAACACTCTACGACTTACATTTGAGGAAGGAATTCAGATGTTGAAGGATGCTGGTGTCGAAATTGATCCTCTTGGGGATCTTAATACAGAGGCTGAGAGGAAATTGGGACAACTCGTCTTAGAGAAATATGGTACGGAGTTCTACATTCTTCACCGCTATCCTTTGGCTGTTAGGCCATTCTATACCATGCCTTGCTATGATAACCCAACTTACAGCAACTCATTTGATGTCTTTATTCGAGGGGAAGAAATAATTTCTGGGGCTCAGCGTGTCCACGTGCCAGAATTTCTAGCTGAACGTGCTCAAGCATATGGCATTGAATTAAAAACCATAGAAACCTATATTGATTCGTACATTTCTCTTTGTTTTCTCCTTTACTCAAAGTTGGAATTTAACCGACTAAGCGAGATTCGATTTGATTCAATTGTGATGTCGACATATGGTGCACCTCCACACGGTGGATTCGGAGTAGGTTTGGAGCGTGTGGTGATGCTTTTTTGTGGTTTGAATAACATTCGCAAAACATCATTGTTCCCTCGTGATCCACAGAGGATTGCTCCTTAG 3252 45.3 MADALPSCRSPAATRAAGEKEWSAKEENVDDSDVNFEAEVSKLRGQWELASVLNFLNVFEPVIGKSLRISAEEIEKGLIEPESSLAELHIALLKGIPPVSKMLNGSSAWVTVLCKKLAPWWPWVAEGEIPIKAFKGEEISNYKKLDPTKRLLLLKALCEIRADVLYDGNPFVGYRLYREVFKCDTKIKGKQKGSMPLPMFSTQWETMATNLEEFHKVKDNFLCSKITSEVSVGRKIESDAIPVLEKLQKKKEKSLKRKHREDKLLNDFNKSCIVGVTRTCRVRAPVNYTFEEYNRAIDNAIRLSRNVKNTDEKEQGMHHKRSRKDVSTSENPDTMTKSDDVSGNSDESSNNDTGSNTSKEADLDSADDIDNKDYEGKDDGDNDSDSDYSDAEEKNEMIHSERETDVEQPAAVCSKRLDRSSMSNENRKVGAKSRLRQRPVLNSALDGVTPSPSPSASALSLCFDCRRRQPSPAQPPRRSYDFHYLYQTDRFGSKFDPNRMNRTPSIAPTMSASSETPIDEPPSADDESSKAVSKKAAKKEAAKQEKLRRRQEAAAEAAISSLNVEEDPLSANYGDVPLSDLQSKEAKDIKNWTQVGSLTGELKDKYVILRGRVQTIRAVAKKMAFLVVRERGFTVQCVVSEQPELVSRQMVKYVCGLSRESIVDVEGVVSVPNVAIKGATQQVEIQVRKVYCISKAMPTLPINIEDAARSEAEIEKALQAGEQLVRVNQDTRLNYRVLDMRTPANQGIFRIQSKISDFDYKGQPACLAQSPQLHKQMAICGDFGRVFEIGSVFRAEDSYTHRHLCEFVGLDVEMEIKAHYSEVMDVVDRLFVSIFDSLNQICKAELEAVNRQYPFEPLKVNFIDFLLRKNLHSTDQSVRHSFGYGFVPIDMYNYLRNTLRLTFEEGIQMLKDAGVEIDPLGDLNTEAERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCYDNPTYSNSFDVFIRGEEIISGAQRVHVPEFLAERAQAYGIELKTIETYIDSYISLCFLLYSKLEFNRLSEIRFDSIVMSTYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLFPRDPQRIAP 1083
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28792004 28803730 + Lsi04G021720.1 Lsi04g02172 662221

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02172 1083 Gene3D Bira Bifunctional Protein; Domain 2 701 1083 IPR045864 -
Lsi04g02172 1083 PRINTS Aspartyl-tRNA synthetase signature 1038 1052 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Lsi04g02172 1083 PRINTS Aspartyl-tRNA synthetase signature 784 797 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Lsi04g02172 1083 PRINTS Aspartyl-tRNA synthetase signature 767 779 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Lsi04g02172 1083 Pfam tRNA synthetases class II (D, K and N) 766 1014 IPR004364 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Lsi04g02172 1083 PANTHER ASPARTATE--TRNA LIGASE, CYTOPLASMIC 524 757 - -
Lsi04g02172 1083 PANTHER ASPARTYL-TRNA SYNTHETASE 524 757 IPR004523 GO:0000166|GO:0004815|GO:0005524|GO:0005737|GO:0006422
Lsi04g02172 1083 PANTHER ASPARTYL-TRNA SYNTHETASE 756 1014 IPR004523 GO:0000166|GO:0004815|GO:0005524|GO:0005737|GO:0006422
Lsi04g02172 1083 MobiDBLite consensus disorder prediction 331 360 - -
Lsi04g02172 1083 MobiDBLite consensus disorder prediction 1 28 - -
Lsi04g02172 1083 PANTHER ASPARTATE--TRNA LIGASE, CYTOPLASMIC 756 1014 - -
Lsi04g02172 1083 PANTHER ASPARTATE--TRNA LIGASE, CYTOPLASMIC 1042 1083 - -
Lsi04g02172 1083 Pfam tRNA synthetases class II (D, K and N) 1040 1077 IPR004364 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Lsi04g02172 1083 SUPERFAMILY Nucleic acid-binding proteins 571 699 IPR012340 -
Lsi04g02172 1083 MobiDBLite consensus disorder prediction 361 379 - -
Lsi04g02172 1083 MobiDBLite consensus disorder prediction 391 409 - -
Lsi04g02172 1083 Gene3D - 565 699 IPR012340 -
Lsi04g02172 1083 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 785 1075 IPR006195 -
Lsi04g02172 1083 SUPERFAMILY Class II aaRS and biotin synthetases 725 1082 IPR045864 -
Lsi04g02172 1083 MobiDBLite consensus disorder prediction 498 518 - -
Lsi04g02172 1083 CDD AspRS_cyto_N 606 706 - -
Lsi04g02172 1083 MobiDBLite consensus disorder prediction 491 549 - -
Lsi04g02172 1083 PANTHER ASPARTYL-TRNA SYNTHETASE 1042 1083 IPR004523 GO:0000166|GO:0004815|GO:0005524|GO:0005737|GO:0006422
Lsi04g02172 1083 MobiDBLite consensus disorder prediction 307 330 - -
Lsi04g02172 1083 MobiDBLite consensus disorder prediction 307 458 - -
Lsi04g02172 1083 MobiDBLite consensus disorder prediction 444 458 - -
Lsi04g02172 1083 Coils Coil 534 556 - -
Lsi04g02172 1083 MobiDBLite consensus disorder prediction 523 549 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02172 K22503 DARS1; aspartyl-tRNA synthetase [EC:6.1.1.12] - csv:101222217 861.292
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02172 Lsi-Chr4:28792004 Lsi06g01499 Lsi-Chr6:25445632 2.44E-63 dispersed
Lsi07g01297 Lsi-Chr7:18907150 Lsi04g02172 Lsi-Chr4:28792004 7.92E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g255 Blo01g01355 . Bda01g00715 . . . . Bma01g02143 . . . . Car09g00436 . . . Cpe06g00372 . . . . . . . . . . . . . . Cone4ag1839 Cone7ag1745 . . Lsi04g02172 Csa03g04379 Chy04g00323 . . . . . . . . . Sed05g1660 . Cmo09g00498 . . . . . . Bhi09g02315 Tan01g3700 Cmetu04g3175 . Hepe01g2064 Mch11g0600 . . . . . . . . . . . Cme04g00363
Vvi4g394 Blo01g01356 . Bda01g00716 . . . . Bma01g02144 . . Cma01g01543 . Car09g00435 . . . Cpe06g00371 . . . . . . . . . . . . . . . Cone7ag1744 . . Lsi04g02172 Csa03g04378 Chy04g00324 . . . . . . . . . . Cmo01g01593 Cmo09g00497 . . Car01g01172 . . . . . . . . . . . . . . . . . . . . Cme04g00364
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007164 1 1 2 1 1 1 2 1 1 1 1 1 2 1 0 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02172 Lsi_Chr04 FPKM 5.932688 5.807878 0.359331 0.28155 0.211605 0.307479 0.355517 0.355636 0.47204 0.441959