Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02180 ATGAGAAGTGGACGTTGCAAGTACACCGGTCAATCTCTGAGAGCGGTGCCAATACGCGTTTTAACTGTGGGGAAGAAGAGGTCTCGTGGCGTACAGCTTCTCGTTGATGAGTATATTCAAAAGCTCAACAACTACTGTCATGTTGAAGATGTTCAACTGCGGTCAAATCCAAGGAATGCGCGGGATCCGAGAGCTCAGGTTGATGATGAAGACATGGCTGTCGTGAATCTTATCAAGTCTGACGATTGGGTTGTGATGTTGGATGAGAATGGAAAAGAGGTATCCTCCGAGCAGATGGCTGAGTTGGTGGCAGATGCAGGCAATACAGGTGCTTCAAGATTATCATTTTGCATTGGTGGACCTTATGGCCATGGACAACAACTGCGACAACGAGCTAACTTATCGATCAAGCTCTCTTCCATGGTCAGAAGTACCATCATTAGCAGCAGCAGCAGCTCATTTGCCAGCATAGCGAAAGAAAAAAAAAACACGACCATGAACTACAACACTCTCCGCATCTCATTCTCGTCTCTTCCATTGTTGAAAACACTCCCCAATTCTTCCTCCCTGAAACCGGCGACCCAAATCGCCGCAAAATCTGCTCACCGTCGAATCTATATCATGAATTCTAGCTCGAAGCTCGATATTAGATCGTCGTCGTCGTCGACATGTCAAGTACCAGGGCTAGAATCGGAGGAGATGGATAGAATTGCGGAACAAATGTACCGGCGCTATTCGTCTTCTTCGTCTTCAGGGATCAAGAGAGGAAAAGGAGTAGCCATTGTTTGGTTCAGAAATGACCTCCGTATGCTGGACAACGAAGCCCTGTATAAGGCCTGGATTTCGTCCGAGGCCGTGTTGCCGGTGTATTGCGTTGATCCGAGACTTTTTGGTTCTACTTGCTACTTTGGATTTCCTAAAACTGGAGCAATAAGAGCTCAATTTATTGTTGAATGCTTGGCTGACTTGAAAAGGAATTTAACTAAACGAGGCCTTAACTTGCTTATTCAACATGGGAAGCCTGAAGAAATCCTCCCTTCTCTTGCAAAAGCTCTTGGTGCCCACACAGTTTATGCTCAAATGGAAACTTGTAGTGAGGAATTATATGTTGAAAGAATGGTGAGCAAGGGCCTCAAAACTGTGGTGCTATCACCAACCTCTGAGAAGTCTGCCAAGTCGAGTGCTGCTAGAAACCCTACTTTTCAACTTGTTTGGGGCACCACCATGTACCACACAGATGACCTTCCATTTGACACCAACAGTTTACCTGATGTCTACACACAGTTTCGTAAATCTGTTGAAGCTAAATGTGCAATTCGAGATTGCATTAGACTTCCAGCTCTTCTTGGGCCTCCAGCAAGCATCGATGATTGGGGATCTGTTCCCTCACTTGATAAGCTTGGGCTTCAACCTCCAACTGTTGTTAAGGGCATGAGGTTTATTGGGGGTGAGAGCGCAGCTCTCTCCAGAATTTATGAGTATTTCTGGAAGAAGGATTTACTACGGATCTATAAGGAAACGAGGAATGGGATGTTAGGACCTGACTACTCTACAAAATTCTCTCCATGGCTTGCTTCAGGAAGCATTTCGCCTCGTCTTATTCATGAAGAGGTACCCTCTAATAGATGCAAATATGAAAGAATTATCAACAACTGGGTTCATGTCAAATCGAGGCCGGCAGATATTGTTGTAGACAATGAGTATGAAAGCCTTGCAATCAAATTAGCACCTCTTAAAATAGTATGTTCCTTCCTTGTTCGAGATATGGGTATTGACTGGCGTATGGGAGCTGAATGGTTTGAGACATGCCTTCTCGATTATGACCCTTGCTCTAATTATGGAAATTGGACATATGGAGCTGGAGTTGGGAATGACCCAAGGGAAGATCGTTACTTCAGTATCCCCAAGCAAGCACAGACATACGATCCCGAAGGCGAATATGTGGCTTACTGGTTGCCACAGCTACGAATGTTACCCAAAGACAAGAGGCACTTCCCAGGAAAAATGTTGTACATTGAACAAGTCATACCTCTGAAGTTTGGAAATGCTGGAAGGCCCCAAAGCCAAGATTCTGCAAGAAGAAAAAACTTTGGGGGGAAACAAGCAAAGGACTTCAGAAGATAA 2124 44.92 MRSGRCKYTGQSLRAVPIRVLTVGKKRSRGVQLLVDEYIQKLNNYCHVEDVQLRSNPRNARDPRAQVDDEDMAVVNLIKSDDWVVMLDENGKEVSSEQMAELVADAGNTGASRLSFCIGGPYGHGQQLRQRANLSIKLSSMVRSTIISSSSSSFASIAKEKKNTTMNYNTLRISFSSLPLLKTLPNSSSLKPATQIAAKSAHRRIYIMNSSSKLDIRSSSSSTCQVPGLESEEMDRIAEQMYRRYSSSSSSGIKRGKGVAIVWFRNDLRMLDNEALYKAWISSEAVLPVYCVDPRLFGSTCYFGFPKTGAIRAQFIVECLADLKRNLTKRGLNLLIQHGKPEEILPSLAKALGAHTVYAQMETCSEELYVERMVSKGLKTVVLSPTSEKSAKSSAARNPTFQLVWGTTMYHTDDLPFDTNSLPDVYTQFRKSVEAKCAIRDCIRLPALLGPPASIDDWGSVPSLDKLGLQPPTVVKGMRFIGGESAALSRIYEYFWKKDLLRIYKETRNGMLGPDYSTKFSPWLASGSISPRLIHEEVPSNRCKYERIINNWVHVKSRPADIVVDNEYESLAIKLAPLKIVCSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQTYDPEGEYVAYWLPQLRMLPKDKRHFPGKMLYIEQVIPLKFGNAGRPQSQDSARRKNFGGKQAKDFRR 707
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28886116 28894736 - Lsi04G021800.1 Lsi04g02180 662229

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02180 707 Pfam Predicted SPOUT methyltransferase 18 142 IPR003742 GO:0006364|GO:0008168
Lsi04g02180 707 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 580 673 IPR036134 -
Lsi04g02180 707 Gene3D HUPs 221 406 IPR014729 -
Lsi04g02180 707 PANTHER CRYPTOCHROME DASH 244 540 - -
Lsi04g02180 707 PANTHER CRYPTOCHROME DASH 580 684 - -
Lsi04g02180 707 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 477 540 IPR036134 -
Lsi04g02180 707 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 256 454 IPR036155 -
Lsi04g02180 707 CDD RlmH-like 18 141 IPR003742 GO:0006364|GO:0008168
Lsi04g02180 707 PANTHER CRYPTOCHROME 244 540 IPR002081 -
Lsi04g02180 707 PANTHER CRYPTOCHROME 580 684 IPR002081 -
Lsi04g02180 707 SUPERFAMILY alpha/beta knot 18 142 IPR029028 -
Lsi04g02180 707 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 578 684 - -
Lsi04g02180 707 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 258 409 IPR006050 -
Lsi04g02180 707 Pfam FAD binding domain of DNA photolyase 580 670 IPR005101 -
Lsi04g02180 707 Pfam DNA photolyase 260 441 IPR006050 -
Lsi04g02180 707 Gene3D - 15 147 IPR029026 -
Lsi04g02180 707 Gene3D - 407 561 - -
Lsi04g02180 707 MobiDBLite consensus disorder prediction 683 707 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02180 K25656 cry, CRYD; cryptochrome - csv:101221042 909.827
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02408 Lsi-Chr2:30692789 Lsi04g02180 Lsi-Chr4:28886116 5.26E-53 dispersed
Lsi04g02180 Lsi-Chr4:28886116 Lsi09g00548 Lsi-Chr9:5787643 1.24E-13 dispersed
Lsi04g02232 Lsi-Chr4:29366679 Lsi04g02180 Lsi-Chr4:28886116 1.56E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g222 Blo01g01348 . Bda01g00709 . . . . Bma01g02136 . . . . . . . . . . . . . . . . Cla05g01786 Cam05g1905 Cec05g1916 Cco05g1979 Clacu05g1898 Cmu05g1779 Cre05g1907 Cone4ag1846 . . . Lsi04g02180 Csa03g04388 Chy04g00314 . . . . . . . . . . Cmo01g01600 . . . . . . . Bhi09g02331 Tan01g3714 . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007699 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 3 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02180 Lsi_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0