Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02185 ATGCCTCGCAAGGTGAGCCACGGGTTAGATTACGATGAAGATTACGACGAATACGACGATTACGATTATTACGACAACGATTTCGATGCAGAAGAAAAAGTAACAGAAAAAACACCTGAGACTAAGGAAGAAACAAAGGGGCACAAGCTTTGGCGATGCCCAATTTGCACTTACGACAATGAAGACAATTTTTCTGTCTGCGATATATGTGGGGTTCTGCGCAACCCTTTGGTCAACAACAGATCTCCTGAAGATAGAACAGTTGAGAACATCTGCAAAGACTCTGGAGTATCCAAAATGGCCAAGTCTCTCTTTGCATCGTTGCCAAATCAGATACCCAAAAGGGCTGTAAAATTTCAAGAGCAGGACGATAAAATTGTGGAAGAAACAGAAGAGAACATCCACGAGATTGGAAATATCCGGGGCCATTTGCATGAATTTCATAATGCTTTTAGTACCTGTAGTCATTTCCGTACTAATATAGTCCCTTTCAAGTTTGATATTCCATCCCCAGATGATGTGGTTTCTAATGGATTGCGTTCCTCCAAAGTTTGTTTAAAAGCAGTCAGCCACAACTTCAACTCTTCAATATTAACTTCAGACATCACTAAGAAATCTGCAAATAATGCAGCATTGACTTCAAAAAGTGCACATAGCTCGTCTACTGTATTGCCAATGAGCAACTCAGGCAGTATAGGAGATACACAGTTGAGTACCAAAAGTTCAAACAAATCAGGGACCTCAATTGGAAAAAGTACAATGGTTATTGAAGAACATAATACGTCAATTAGTGTAACAAAAAATTTTCAACCACGTGATAACCGGTCATCAAGCACTTCCACATCAAAGTCAGCAGGCAAATTTGACAGCTTGGATGAGAGCAGCCACCCTTCTGTGGAGCGGGAAAAGCCCCAAAGTCTTGCCGGTGGTTTGAACAACATGGTTCTAAATGTCAAATCTGCCTATGCAAATTATATTAGTGGGTTAGGAAAAACATCAAATGTGCAGTATAAGCATGATAAATGGATGCTACCTGATAAAGCTGTAGATACGCTGACTCAGCTGAATCTTGCTATAGTTGGTCATGTTGATTCTGGAAAATCTACTCTCTCAGGAAGACTGCTGCACCTATTGGGACGTGTATCCCAAAAAGAAATGCACAAATATGAAAAAGAGGCAAAGTCACTGGGCAAGGGTTCCTTTGCTTATGCCTGGGCACTGGATGAGAGTGCAGAAGAAAGAGAGAGAGGAATAACCATGACTGTTGGTGTTGCTTATTTTGATTCTAAAAGATATCATGTTGTGGTGCTTGATTCCCCAGGTCATAAAGATTTTGTTCCAAACTTGATATCTGGGGCCACACAAGCTGACGCCGCAGTTCTTGTTATAGATGCATCTGTTGGTGCATTTGAGGCCGGTATGGACAGTTCAAAGGGGCAAACAAGGGAACATGTGCAATTAATTAGGAGCTTTGGTGTAGATCAGATTATTGTTGCAGTTAACAAAATGGATGTGGTGGAGTATTCCAAAGATCGATATGAATTTATTAAGCTGCAACTTGGAACCTTTATTCGTTCATGTGGTTATAAAGATTCATCATTGTCTTGGATTCCATTGAGTGCCATGGCAAATCAGAATCTAGTGACTGCCCCTTCTGATGTTCAATTTTTGTCCTGGTATCGTGGACCTAATCTTTTGGAGGCAATTGATTCCCTTCAACCACCCACTCGAGAATTCTCTAAGCCACTGCTTATGCCGATATGTGATGTAGTTAGATCACTTTCACTAGGACAAGTGTCTGCCTGTGGCAAACTGGAAGCTGGAGCTCTCCAGTCTGGATCTAAGATTCTAATCATGCCATCTGGAGATAAAGCAACAGTGCGCACTTTAGAACGCAATTCTCAGGCTTGCAAAATCGCAAGAGCGGGGGACAATGTGACTGTTACTCTACAAGGAGTTGAAGCAAGTAGCGTAATGGCTGGGGGTGTCCTATGCCATCCTGATTTTCCTGTTGCTGTTGCAAAACATTTGGAATTGAAGATCCTCACCTTGGAATTCGCAACACCGATATTAATAGGATCTCAGTTGGAAATTCATATACACCACGTGAAGGAGGCTGCTAGAGTTGCAAGAATAGTGTCATTGCTTGATTCAAAGACGGGAAAGGTGACGAAGAAGGCACCGCGTTGTCTTAGTGCTAAACAAAGTGCAGTGATTGAGGTCGTTTTACAAAGTCCAGTTTGTGTGGAAGCATTCTCGACTAGTCGAGCTCTCGGGCGGGTATTTCTGAGAACGATGGGCAGGACTATAGCCGTTGGCATTGTGACCCAACTAATCGGAGATCCTGAATAA 2352 42.22 MPRKVSHGLDYDEDYDEYDDYDYYDNDFDAEEKVTEKTPETKEETKGHKLWRCPICTYDNEDNFSVCDICGVLRNPLVNNRSPEDRTVENICKDSGVSKMAKSLFASLPNQIPKRAVKFQEQDDKIVEETEENIHEIGNIRGHLHEFHNAFSTCSHFRTNIVPFKFDIPSPDDVVSNGLRSSKVCLKAVSHNFNSSILTSDITKKSANNAALTSKSAHSSSTVLPMSNSGSIGDTQLSTKSSNKSGTSIGKSTMVIEEHNTSISVTKNFQPRDNRSSSTSTSKSAGKFDSLDESSHPSVEREKPQSLAGGLNNMVLNVKSAYANYISGLGKTSNVQYKHDKWMLPDKAVDTLTQLNLAIVGHVDSGKSTLSGRLLHLLGRVSQKEMHKYEKEAKSLGKGSFAYAWALDESAEERERGITMTVGVAYFDSKRYHVVVLDSPGHKDFVPNLISGATQADAAVLVIDASVGAFEAGMDSSKGQTREHVQLIRSFGVDQIIVAVNKMDVVEYSKDRYEFIKLQLGTFIRSCGYKDSSLSWIPLSAMANQNLVTAPSDVQFLSWYRGPNLLEAIDSLQPPTREFSKPLLMPICDVVRSLSLGQVSACGKLEAGALQSGSKILIMPSGDKATVRTLERNSQACKIARAGDNVTVTLQGVEASSVMAGGVLCHPDFPVAVAKHLELKILTLEFATPILIGSQLEIHIHHVKEAARVARIVSLLDSKTGKVTKKAPRCLSAKQSAVIEVVLQSPVCVEAFSTSRALGRVFLRTMGRTIAVGIVTQLIGDPE 783
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28922951 28930706 + Lsi04G021850.1 Lsi04g02185 662234

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02185 783 Pfam Elongation factor Tu domain 2 603 665 IPR004161 GO:0005525
Lsi04g02185 783 Gene3D Translation factors 580 669 - -
Lsi04g02185 783 CDD HBS1_C_III 670 778 - -
Lsi04g02185 783 PRINTS GTP-binding elongation factor signature 415 423 IPR000795 GO:0003924|GO:0005525
Lsi04g02185 783 PRINTS GTP-binding elongation factor signature 435 445 IPR000795 GO:0003924|GO:0005525
Lsi04g02185 783 PRINTS GTP-binding elongation factor signature 356 369 IPR000795 GO:0003924|GO:0005525
Lsi04g02185 783 PRINTS GTP-binding elongation factor signature 451 462 IPR000795 GO:0003924|GO:0005525
Lsi04g02185 783 PRINTS GTP-binding elongation factor signature 496 505 IPR000795 GO:0003924|GO:0005525
Lsi04g02185 783 MobiDBLite consensus disorder prediction 213 288 - -
Lsi04g02185 783 SUPERFAMILY Translation proteins 574 669 IPR009000 -
Lsi04g02185 783 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 675 779 IPR009001 -
Lsi04g02185 783 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 338 586 IPR027417 -
Lsi04g02185 783 Gene3D - 345 576 IPR027417 -
Lsi04g02185 783 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 352 583 IPR000795 GO:0003924|GO:0005525
Lsi04g02185 783 ProSitePatterns Zinc finger RanBP2-type signature. 51 70 IPR001876 -
Lsi04g02185 783 PANTHER TRANSLATION FACTOR 53 781 - -
Lsi04g02185 783 Gene3D Translation factors 673 780 - -
Lsi04g02185 783 SUPERFAMILY Ran binding protein zinc finger-like 47 74 IPR036443 -
Lsi04g02185 783 CDD rubredoxin_like 51 72 - -
Lsi04g02185 783 MobiDBLite consensus disorder prediction 213 306 - -
Lsi04g02185 783 Pfam Elongation factor Tu GTP binding domain 355 572 IPR000795 GO:0003924|GO:0005525
Lsi04g02185 783 Pfam Elongation factor Tu C-terminal domain 677 778 IPR004160 -
Lsi04g02185 783 CDD EF1_alpha 356 575 - -
Lsi04g02185 783 PANTHER OS04G0595300 PROTEIN 53 781 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02185 K14416 HBS1; elongation factor 1 alpha-like protein - csv:101219939 1364.75
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02185 Lsi-Chr4:28922951 Lsi09g01132 Lsi-Chr9:18223748 3.39E-93 dispersed
Lsi04g02185 Lsi-Chr4:28922951 Lsi10g01288 Lsi-Chr10:17113450 1.78E-93 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi09g01132 . 1 446 Eukaryotic Initiation Factors Gene Family AT5G60390 96.2 2.1e-253 871.3
Lsi02g01702 . 5 453 Eukaryotic Initiation Factors Gene Family AT5G60390 95.5 2.8e-253 870.9
Lsi10g01288 . 88 536 Eukaryotic Initiation Factors Gene Family AT5G60390 94.9 1.4e-252 868.6
Lsi02g01704 . 1 449 Eukaryotic Initiation Factors Gene Family AT5G60390 95.1 4.0e-252 867.1
Lsi02g01701 . 1 428 Eukaryotic Initiation Factors Gene Family AT5G60390 91.7 8.7e-239 822.8
Lsi09g01132 . 1 446 Eukaryotic Initiation Factors Gene Family AT1G07920 96.2 2.1e-253 871.3
Lsi02g01702 . 5 453 Eukaryotic Initiation Factors Gene Family AT1G07920 95.5 2.8e-253 870.9
Lsi10g01288 . 88 536 Eukaryotic Initiation Factors Gene Family AT1G07920 94.9 1.4e-252 868.6
Lsi02g01704 . 1 449 Eukaryotic Initiation Factors Gene Family AT1G07920 95.1 4.0e-252 867.1
Lsi02g01701 . 1 428 Eukaryotic Initiation Factors Gene Family AT1G07920 91.7 8.7e-239 822.8
Lsi10g01288 . 88 536 Eukaryotic Initiation Factors Gene Family AT1G07930 79.7 1.2e-201 699.1
Lsi09g01132 . 1 446 Eukaryotic Initiation Factors Gene Family AT1G07930 80.3 2.7e-201 698.0
Lsi02g01702 . 5 453 Eukaryotic Initiation Factors Gene Family AT1G07930 79.5 1.0e-200 696.0
Lsi02g01704 . 1 449 Eukaryotic Initiation Factors Gene Family AT1G07930 79.1 1.5e-199 692.2
Lsi02g01701 . 1 428 Eukaryotic Initiation Factors Gene Family AT1G07930 76.0 6.4e-187 650.2
Lsi09g01132 . 1 446 Eukaryotic Initiation Factors Gene Family AT1G07940 96.2 2.1e-253 871.3
Lsi02g01702 . 5 453 Eukaryotic Initiation Factors Gene Family AT1G07940 95.5 2.8e-253 870.9
Lsi10g01288 . 88 536 Eukaryotic Initiation Factors Gene Family AT1G07940 94.9 1.4e-252 868.6
Lsi02g01704 . 1 449 Eukaryotic Initiation Factors Gene Family AT1G07940 95.1 4.0e-252 867.1
Lsi02g01701 . 1 428 Eukaryotic Initiation Factors Gene Family AT1G07940 91.7 8.7e-239 822.8
Lsi07g00938 . 1 696 Eukaryotic Initiation Factors Gene Family AT3G02270 50.4 9.3e-152 534.3
Lsi11g01466 . 1 113 Eukaryotic Initiation Factors Gene Family AT4G27130 88.5 2.6e-54 208.0
Lsi02g01903 . 1 112 Eukaryotic Initiation Factors Gene Family AT4G27130 80.5 3.1e-47 184.5
Lsi05g00595 . 1 112 Eukaryotic Initiation Factors Gene Family AT4G27130 80.5 5.2e-47 183.7
Lsi11g01466 . 1 113 Eukaryotic Initiation Factors Gene Family AT5G54760 87.6 5.7e-54 206.8
Lsi02g01903 . 1 112 Eukaryotic Initiation Factors Gene Family AT5G54760 80.5 3.1e-47 184.5
Lsi05g00595 . 1 112 Eukaryotic Initiation Factors Gene Family AT5G54760 80.5 5.2e-47 183.7
Lsi05g00595 . 1 112 Eukaryotic Initiation Factors Gene Family AT5G54940 86.6 4.8e-53 203.8
Lsi02g01903 . 1 112 Eukaryotic Initiation Factors Gene Family AT5G54940 83.9 7.0e-52 199.9
Lsi11g01466 . 1 113 Eukaryotic Initiation Factors Gene Family AT5G54940 73.5 2.0e-43 171.8
Lsi11g01466 . 1 113 Eukaryotic Initiation Factors Gene Family AT1G54290 88.5 6.8e-55 209.9
Lsi05g00595 . 1 112 Eukaryotic Initiation Factors Gene Family AT1G54290 80.5 6.2e-48 186.8
Lsi02g01903 . 1 112 Eukaryotic Initiation Factors Gene Family AT1G54290 78.8 6.8e-47 183.3
Lsi11g01391 . 1 128 Eukaryotic Initiation Factors Gene Family AT5G35680 93.0 2.5e-65 245.0
Lsi07g00044 . 6 133 Eukaryotic Initiation Factors Gene Family AT5G35680 92.2 5.6e-65 243.8
Lsi07g00044 . 6 150 Eukaryotic Initiation Factors Gene Family AT2G04520 88.3 9.6e-70 259.6
Lsi11g01391 . 1 145 Eukaryotic Initiation Factors Gene Family AT2G04520 88.3 2.1e-69 258.5
Lsi05g00846 . 1 235 Eukaryotic Initiation Factors Gene Family AT2G40290 85.5 1.6e-114 409.1
Lsi05g00846 . 1 354 Eukaryotic Initiation Factors Gene Family AT5G05470 79.2 5.4e-156 547.4
Lsi02g01204 . 1 267 Eukaryotic Initiation Factors Gene Family AT5G20920 76.6 4.9e-112 401.0
Lsi02g01204 . 114 254 Eukaryotic Initiation Factors Gene Family AT5G01940 56.3 1.5e-38 156.8
Lsi02g01204 . 118 261 Eukaryotic Initiation Factors Gene Family AT3G07920 70.9 5.2e-56 214.2
Lsi11g00029 . 1 464 Eukaryotic Initiation Factors Gene Family AT1G04170 91.4 1.2e-246 849.0
Lsi11g00029 . 4 464 Eukaryotic Initiation Factors Gene Family AT4G18330 82.9 1.6e-219 758.8
Lsi11g00029 . 93 463 Eukaryotic Initiation Factors Gene Family AT2G18720 75.5 6.6e-163 570.5
Lsi02g02858 . 1 394 Eukaryotic Initiation Factors Gene Family AT1G53880 79.0 2.2e-169 592.0
Lsi02g02858 . 1 326 Eukaryotic Initiation Factors Gene Family AT1G72340 77.4 1.1e-134 476.5
Lsi06g00347 . 101 415 Eukaryotic Initiation Factors Gene Family AT2G05830 72.4 9.5e-126 446.8
Lsi09g00815 . 464 903 Eukaryotic Initiation Factors Gene Family AT3G07300 65.5 1.6e-146 516.2
Lsi06g01356 . 1 667 Eukaryotic Initiation Factors Gene Family AT5G38640 55.0 2.9e-179 625.5
Lsi06g01357 . 1 667 Eukaryotic Initiation Factors Gene Family AT5G38640 55.6 2.9e-179 625.5
Lsi06g01356 . 364 667 Eukaryotic Initiation Factors Gene Family AT2G44070 74.1 3.0e-127 451.8
Lsi06g01357 . 364 667 Eukaryotic Initiation Factors Gene Family AT2G44070 73.8 8.7e-127 450.3
Lsi06g01357 . 1 612 Eukaryotic Initiation Factors Gene Family AT1G48970 52.9 3.9e-160 562.0
Lsi06g01356 . 1 612 Eukaryotic Initiation Factors Gene Family AT1G48970 53.1 1.1e-159 560.5
Lsi07g00938 . 1 696 Eukaryotic Initiation Factors Gene Family AT2G34970 58.4 4.2e-206 714.9
Lsi07g00938 . 1 696 Eukaryotic Initiation Factors Gene Family AT3G02270 50.4 9.3e-152 534.3
Lsi07g00938 . 1 696 Eukaryotic Initiation Factors Gene Family AT4G18300 54.8 8.2e-175 610.9
Lsi02g00042 . 126 1271 Eukaryotic Initiation Factors Gene Family AT1G48410 71.2 0.0e+00 1518.8
Lsi05g01645 . 119 988 Eukaryotic Initiation Factors Gene Family AT1G48410 76.4 0.0e+00 1359.0
Lsi03g00070 . 130 1045 Eukaryotic Initiation Factors Gene Family AT1G48410 56.2 3.8e-293 1004.6
Lsi06g00915 . 3 539 Eukaryotic Initiation Factors Gene Family AT1G48410 68.7 3.6e-219 758.8
Lsi06g00914 . 3 302 Eukaryotic Initiation Factors Gene Family AT1G48410 59.9 4.6e-89 326.6
Lsi05g01645 . 1 988 Eukaryotic Initiation Factors Gene Family AT5G43810 82.0 0.0e+00 1647.9
Lsi02g00042 . 307 1271 Eukaryotic Initiation Factors Gene Family AT5G43810 69.3 0.0e+00 1324.3
Lsi03g00070 . 134 1045 Eukaryotic Initiation Factors Gene Family AT5G43810 53.9 4.4e-283 971.1
Lsi06g00915 . 3 539 Eukaryotic Initiation Factors Gene Family AT5G43810 74.5 3.9e-239 825.1
Lsi06g00914 . 3 302 Eukaryotic Initiation Factors Gene Family AT5G43810 61.0 5.3e-95 346.3
Lsi06g00069 . 352 1285 Eukaryotic Initiation Factors Gene Family AT4G11420 70.6 0.0e+00 1105.1
Lsi02g00950 . 1 753 Eukaryotic Initiation Factors Gene Family AT4G11420 78.8 0.0e+00 1077.8
Lsi02g00951 . 1 979 Eukaryotic Initiation Factors Gene Family AT4G11420 61.7 3.3e-291 998.0
Lsi02g01935 . 9 712 Eukaryotic Initiation Factors Gene Family AT5G27640 76.7 0.0e+00 1136.3
Lsi02g01931 . 5 712 Eukaryotic Initiation Factors Gene Family AT5G27640 76.2 0.0e+00 1133.2
Lsi02g01935 . 9 712 Eukaryotic Initiation Factors Gene Family AT5G25780 74.8 0.0e+00 1110.9
Lsi02g01931 . 9 712 Eukaryotic Initiation Factors Gene Family AT5G25780 74.8 0.0e+00 1110.5
Lsi05g00160 . 1 940 Eukaryotic Initiation Factors Gene Family AT3G56150 70.0 0.0e+00 1147.1
Lsi05g00160 . 3 841 Eukaryotic Initiation Factors Gene Family AT3G22860 59.6 4.4e-257 884.4
Lsi01g00053 . 5 566 Eukaryotic Initiation Factors Gene Family AT4G20980 78.8 2.6e-259 891.3
Lsi01g00053 . 5 563 Eukaryotic Initiation Factors Gene Family AT5G44320 76.5 4.0e-252 867.5
Lsi01g01809 . 3 448 Eukaryotic Initiation Factors Gene Family AT3G57290 84.5 1.6e-221 765.4
Lsi03g00318 . 2 285 Eukaryotic Initiation Factors Gene Family AT2G39990 76.3 1.2e-127 453.0
Lsi05g00391 . 8 288 Eukaryotic Initiation Factors Gene Family AT3G11400 69.6 9.3e-118 420.2
Lsi02g00033 . 8 288 Eukaryotic Initiation Factors Gene Family AT3G11400 69.3 3.0e-116 415.2
Lsi05g00391 . 9 286 Eukaryotic Initiation Factors Gene Family AT5G06000 68.0 2.4e-107 385.6
Lsi02g00033 . 9 286 Eukaryotic Initiation Factors Gene Family AT5G06000 69.0 3.2e-107 385.2
Lsi07g00055 . 88 337 Eukaryotic Initiation Factors Gene Family AT1G10840 82.8 4.6e-120 427.6
Lsi03g01514 . 1 247 Eukaryotic Initiation Factors Gene Family AT2G46280 66.7 1.8e-92 335.9
Lsi03g01514 . 1 326 Eukaryotic Initiation Factors Gene Family AT2G46290 80.5 5.4e-159 557.4
Lsi06g00370 . 1 215 Eukaryotic Initiation Factors Gene Family AT4G33250 69.8 1.3e-86 316.2
Lsi02g02921 . 1 391 Eukaryotic Initiation Factors Gene Family AT3G13920 93.9 6.1e-210 726.9
Lsi07g00592 . 269 659 Eukaryotic Initiation Factors Gene Family AT3G13920 92.6 4.4e-208 720.7
Lsi03g01162 . 38 385 Eukaryotic Initiation Factors Gene Family AT3G13920 67.2 2.3e-132 469.2
Lsi02g02921 . 1 413 Eukaryotic Initiation Factors Gene Family AT1G72730 89.6 7.3e-216 746.5
Lsi07g00592 . 269 681 Eukaryotic Initiation Factors Gene Family AT1G72730 89.4 2.1e-215 745.0
Lsi03g01162 . 38 407 Eukaryotic Initiation Factors Gene Family AT1G72730 64.6 3.0e-137 485.3
Lsi03g01162 . 22 407 Eukaryotic Initiation Factors Gene Family AT3G19760 88.4 4.0e-198 687.6
Lsi02g02921 . 37 413 Eukaryotic Initiation Factors Gene Family AT3G19760 64.2 1.1e-139 493.4
Lsi07g00592 . 305 681 Eukaryotic Initiation Factors Gene Family AT3G19760 63.7 1.2e-138 490.0
Lsi08g01201 . 1 341 Eukaryotic Initiation Factors Gene Family AT5G11200 84.8 1.0e-181 633.3
Lsi08g01201 . 1 341 Eukaryotic Initiation Factors Gene Family AT5G11170 95.0 9.2e-188 652.9
Lsi08g01639 . 1 526 Eukaryotic Initiation Factors Gene Family AT1G13020 51.1 7.2e-110 394.8
Lsi10g00469 CCT 2 394 Eukaryotic Initiation Factors Gene Family AT4G38710 57.4 2.3e-80 296.6
Lsi02g00851 . 47 248 Eukaryotic Initiation Factors Gene Family AT4G18040 71.4 4.8e-87 317.8
Lsi09g01200 . 28 202 Eukaryotic Initiation Factors Gene Family AT4G18040 54.0 1.5e-56 216.5
Lsi02g00851 . 62 248 Eukaryotic Initiation Factors Gene Family AT1G29590 63.1 4.7e-74 274.6
Lsi09g01200 . 25 203 Eukaryotic Initiation Factors Gene Family AT1G29590 51.7 2.4e-54 209.1
Lsi02g00851 . 62 248 Eukaryotic Initiation Factors Gene Family AT1G29550 62.6 1.8e-73 272.7
Lsi09g01200 . 25 203 Eukaryotic Initiation Factors Gene Family AT1G29550 51.1 9.3e-54 207.2
Lsi09g01200 . 14 195 Eukaryotic Initiation Factors Gene Family AT5G35620 68.8 3.7e-72 268.1
Lsi02g00851 . 72 238 Eukaryotic Initiation Factors Gene Family AT5G35620 55.8 1.2e-51 199.9
Lsi03g01306 . 17 192 Eukaryotic Initiation Factors Gene Family AT5G18110 86.4 6.7e-91 330.5
Lsi06g01140 . 1 802 Eukaryotic Initiation Factors Gene Family AT5G57870 62.2 2.6e-267 918.3
Lsi04g01347 . 2 850 Eukaryotic Initiation Factors Gene Family AT5G57870 53.1 8.9e-231 797.0
Lsi06g01140 . 2 802 Eukaryotic Initiation Factors Gene Family AT2G24050 54.9 9.8e-227 783.5
Lsi06g01140 . 252 442 Eukaryotic Initiation Factors Gene Family AT1G62410 52.4 5.4e-48 188.0
Lsi08g00945 . 1 448 Eukaryotic Initiation Factors Gene Family AT1G77840 62.0 1.1e-134 476.9
Lsi08g00945 . 1 448 Eukaryotic Initiation Factors Gene Family AT1G36730 68.7 1.7e-122 436.4
Lsi04g01336 CCT 1 127 Eukaryotic Initiation Factors Gene Family AT1G26630 84.3 9.4e-59 223.0
Lsi04g00385 . 1 127 Eukaryotic Initiation Factors Gene Family AT1G26630 82.7 8.0e-58 219.9
Lsi06g01156 . 10 136 Eukaryotic Initiation Factors Gene Family AT1G26630 81.9 6.8e-57 216.9
Lsi08g01248 CCT 1 127 Eukaryotic Initiation Factors Gene Family AT1G26630 80.3 4.9e-55 210.7
Lsi04g01336 CCT 1 159 Eukaryotic Initiation Factors Gene Family AT1G69410 86.8 1.4e-77 285.8
Lsi04g00385 . 1 159 Eukaryotic Initiation Factors Gene Family AT1G69410 83.0 9.7e-76 279.6
Lsi08g01248 CCT 1 159 Eukaryotic Initiation Factors Gene Family AT1G69410 86.2 1.3e-75 279.3
Lsi06g01156 . 10 168 Eukaryotic Initiation Factors Gene Family AT1G69410 84.3 4.8e-75 277.3
Lsi04g01336 CCT 1 159 Eukaryotic Initiation Factors Gene Family AT1G13950 91.2 7.2e-79 290.0
Lsi04g00385 . 1 159 Eukaryotic Initiation Factors Gene Family AT1G13950 86.8 3.3e-76 281.2
Lsi06g01156 . 10 168 Eukaryotic Initiation Factors Gene Family AT1G13950 86.8 9.7e-76 279.6
Lsi08g01248 CCT 1 159 Eukaryotic Initiation Factors Gene Family AT1G13950 88.1 2.8e-75 278.1
Lsi02g02020 . 341 1359 Eukaryotic Initiation Factors Gene Family AT1G76810 61.2 7.7e-296 1013.8
Lsi02g02020 . 473 1359 Eukaryotic Initiation Factors Gene Family AT1G21160 52.4 2.4e-226 782.7
Lsi06g01056 . 1 230 Eukaryotic Initiation Factors Gene Family AT3G55620 82.0 1.5e-112 402.5
Lsi10g00762 . 3 228 Eukaryotic Initiation Factors Gene Family AT3G55620 81.7 2.5e-110 395.2
Lsi06g01056 . 1 230 Eukaryotic Initiation Factors Gene Family AT2G39820 63.2 5.2e-84 307.8
Lsi10g00762 . 7 228 Eukaryotic Initiation Factors Gene Family AT2G39820 63.4 8.3e-82 300.4
Lsi05g00226 . 15 651 Eukaryotic Initiation Factors Gene Family AT2G23350 59.9 9.3e-205 710.3
Lsi03g00505 . 5 648 Eukaryotic Initiation Factors Gene Family AT2G23350 57.7 1.3e-198 689.9
Lsi05g00226 . 18 648 Eukaryotic Initiation Factors Gene Family AT4G34110 72.5 1.9e-255 878.6
Lsi03g00505 . 1 645 Eukaryotic Initiation Factors Gene Family AT4G34110 69.8 1.1e-247 852.8
Lsi08g00587 . 21 666 Eukaryotic Initiation Factors Gene Family AT4G34110 54.6 1.5e-175 613.2
Lsi08g00587 . 1 648 Eukaryotic Initiation Factors Gene Family AT1G22760 57.5 5.6e-194 674.5
Lsi05g00226 . 29 625 Eukaryotic Initiation Factors Gene Family AT1G22760 55.3 1.5e-167 586.6
Lsi03g00505 . 26 634 Eukaryotic Initiation Factors Gene Family AT1G22760 53.3 4.4e-162 568.5
Lsi08g00587 . 34 650 Eukaryotic Initiation Factors Gene Family AT1G71770 58.1 2.3e-190 662.5
Lsi05g00226 . 29 628 Eukaryotic Initiation Factors Gene Family AT1G71770 54.7 5.5e-168 588.2
Lsi03g00505 . 26 626 Eukaryotic Initiation Factors Gene Family AT1G71770 54.2 4.8e-164 575.1
Lsi05g00226 . 3 652 Eukaryotic Initiation Factors Gene Family AT1G49760 70.9 6.6e-259 890.2
Lsi03g00505 . 25 648 Eukaryotic Initiation Factors Gene Family AT1G49760 71.9 2.4e-248 855.1
Lsi08g00587 . 34 665 Eukaryotic Initiation Factors Gene Family AT1G49760 51.9 2.8e-164 575.9
Lsi09g01132 . 1 446 Eukaryotic Initiation Factors Gene Family AT1G07920 96.2 2.1e-253 871.3
Lsi02g01702 . 5 453 Eukaryotic Initiation Factors Gene Family AT1G07920 95.5 2.8e-253 870.9
Lsi10g01288 . 88 536 Eukaryotic Initiation Factors Gene Family AT1G07920 94.9 1.4e-252 868.6
Lsi02g01704 . 1 449 Eukaryotic Initiation Factors Gene Family AT1G07920 95.1 4.0e-252 867.1
Lsi02g01701 . 1 428 Eukaryotic Initiation Factors Gene Family AT1G07920 91.7 8.7e-239 822.8
Lsi10g01288 . 88 536 Eukaryotic Initiation Factors Gene Family AT1G07930 79.7 1.2e-201 699.1
Lsi09g01132 . 1 446 Eukaryotic Initiation Factors Gene Family AT1G07930 80.3 2.7e-201 698.0
Lsi02g01702 . 5 453 Eukaryotic Initiation Factors Gene Family AT1G07930 79.5 1.0e-200 696.0
Lsi02g01704 . 1 449 Eukaryotic Initiation Factors Gene Family AT1G07930 79.1 1.5e-199 692.2
Lsi02g01701 . 1 428 Eukaryotic Initiation Factors Gene Family AT1G07930 76.0 6.4e-187 650.2
Lsi09g01132 . 1 446 Eukaryotic Initiation Factors Gene Family AT1G07940 96.2 2.1e-253 871.3
Lsi02g01702 . 5 453 Eukaryotic Initiation Factors Gene Family AT1G07940 95.5 2.8e-253 870.9
Lsi10g01288 . 88 536 Eukaryotic Initiation Factors Gene Family AT1G07940 94.9 1.4e-252 868.6
Lsi02g01704 . 1 449 Eukaryotic Initiation Factors Gene Family AT1G07940 95.1 4.0e-252 867.1
Lsi02g01701 . 1 428 Eukaryotic Initiation Factors Gene Family AT1G07940 91.7 8.7e-239 822.8
Lsi09g01132 . 1 446 Eukaryotic Initiation Factors Gene Family AT5G60390 96.2 2.1e-253 871.3
Lsi02g01702 . 5 453 Eukaryotic Initiation Factors Gene Family AT5G60390 95.5 2.8e-253 870.9
Lsi10g01288 . 88 536 Eukaryotic Initiation Factors Gene Family AT5G60390 94.9 1.4e-252 868.6
Lsi02g01704 . 1 449 Eukaryotic Initiation Factors Gene Family AT5G60390 95.1 4.0e-252 867.1
Lsi02g01701 . 1 428 Eukaryotic Initiation Factors Gene Family AT5G60390 91.7 8.7e-239 822.8
Lsi02g00499 . 1259 1483 Eukaryotic Initiation Factors Gene Family AT5G12110 54.8 7.7e-50 194.1
Lsi02g00499 . 1259 1483 Eukaryotic Initiation Factors Gene Family AT5G19510 63.1 6.0e-55 211.1
Lsi03g00254 . 1 242 Eukaryotic Initiation Factors Gene Family AT5G19510 52.7 1.6e-47 186.4
Lsi03g00254 . 4 246 Eukaryotic Initiation Factors Gene Family AT1G30230 71.3 1.1e-68 256.9
Lsi02g00499 . 1265 1483 Eukaryotic Initiation Factors Gene Family AT1G30230 76.5 3.2e-68 255.4
Lsi02g00499 . 1262 1483 Eukaryotic Initiation Factors Gene Family AT2G18110 76.9 1.4e-70 263.1
Lsi03g00254 . 4 242 Eukaryotic Initiation Factors Gene Family AT2G18110 72.9 2.6e-69 258.8
Lsi11g00053 . 31 452 Eukaryotic Initiation Factors Gene Family AT1G57720 74.2 4.6e-170 594.3
Lsi05g00730 . 1 411 Eukaryotic Initiation Factors Gene Family AT1G57720 76.5 1.1e-166 583.2
Lsi10g01548 . 547 1388 Eukaryotic Initiation Factors Gene Family AT1G56070 93.7 0.0e+00 1599.7
Lsi10g01549 . 245 1086 Eukaryotic Initiation Factors Gene Family AT1G56070 93.6 0.0e+00 1598.2
Lsi10g01531 . 1 843 Eukaryotic Initiation Factors Gene Family AT1G56070 93.5 0.0e+00 1596.6
Lsi02g01917 . 1593 2629 Eukaryotic Initiation Factors Gene Family AT3G22980 72.1 0.0e+00 1460.3
Lsi09g01778 . 801 1234 Eukaryotic Initiation Factors Gene Family AT5G47880 87.8 4.7e-221 763.8
Lsi06g00004 . 1 234 Eukaryotic Initiation Factors Gene Family AT5G47880 52.2 2.0e-91 333.2
Lsi09g01778 . 804 1236 Eukaryotic Initiation Factors Gene Family AT1G12920 89.4 4.3e-227 783.9
Lsi06g00004 . 1 236 Eukaryotic Initiation Factors Gene Family AT1G12920 52.7 1.0e-95 347.4
Lsi09g01778 . 801 1236 Eukaryotic Initiation Factors Gene Family AT3G26618 90.6 1.2e-229 792.3
Lsi06g00004 . 1 236 Eukaryotic Initiation Factors Gene Family AT3G26618 52.5 1.0e-95 347.4
Lsi04g02185 . 1 781 Eukaryotic Initiation Factors Gene Family AT5G10630 53.1 2.6e-207 718.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005510 1 10 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02185 Lsi_Chr04 FPKM 0.171657 0.0 0.184027 0.174133 0.181117 0.0 0.0 0.25523 0.255628 0.088788