Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02185 ATGCCTCGCAAGGTGAGCCACGGGTTAGATTACGATGAAGATTACGACGAATACGACGATTACGATTATTACGACAACGATTTCGATGCAGAAGAAAAAGTAACAGAAAAAACACCTGAGACTAAGGAAGAAACAAAGGGGCACAAGCTTTGGCGATGCCCAATTTGCACTTACGACAATGAAGACAATTTTTCTGTCTGCGATATATGTGGGGTTCTGCGCAACCCTTTGGTCAACAACAGATCTCCTGAAGATAGAACAGTTGAGAACATCTGCAAAGACTCTGGAGTATCCAAAATGGCCAAGTCTCTCTTTGCATCGTTGCCAAATCAGATACCCAAAAGGGCTGTAAAATTTCAAGAGCAGGACGATAAAATTGTGGAAGAAACAGAAGAGAACATCCACGAGATTGGAAATATCCGGGGCCATTTGCATGAATTTCATAATGCTTTTAGTACCTGTAGTCATTTCCGTACTAATATAGTCCCTTTCAAGTTTGATATTCCATCCCCAGATGATGTGGTTTCTAATGGATTGCGTTCCTCCAAAGTTTGTTTAAAAGCAGTCAGCCACAACTTCAACTCTTCAATATTAACTTCAGACATCACTAAGAAATCTGCAAATAATGCAGCATTGACTTCAAAAAGTGCACATAGCTCGTCTACTGTATTGCCAATGAGCAACTCAGGCAGTATAGGAGATACACAGTTGAGTACCAAAAGTTCAAACAAATCAGGGACCTCAATTGGAAAAAGTACAATGGTTATTGAAGAACATAATACGTCAATTAGTGTAACAAAAAATTTTCAACCACGTGATAACCGGTCATCAAGCACTTCCACATCAAAGTCAGCAGGCAAATTTGACAGCTTGGATGAGAGCAGCCACCCTTCTGTGGAGCGGGAAAAGCCCCAAAGTCTTGCCGGTGGTTTGAACAACATGGTTCTAAATGTCAAATCTGCCTATGCAAATTATATTAGTGGGTTAGGAAAAACATCAAATGTGCAGTATAAGCATGATAAATGGATGCTACCTGATAAAGCTGTAGATACGCTGACTCAGCTGAATCTTGCTATAGTTGGTCATGTTGATTCTGGAAAATCTACTCTCTCAGGAAGACTGCTGCACCTATTGGGACGTGTATCCCAAAAAGAAATGCACAAATATGAAAAAGAGGCAAAGTCACTGGGCAAGGGTTCCTTTGCTTATGCCTGGGCACTGGATGAGAGTGCAGAAGAAAGAGAGAGAGGAATAACCATGACTGTTGGTGTTGCTTATTTTGATTCTAAAAGATATCATGTTGTGGTGCTTGATTCCCCAGGTCATAAAGATTTTGTTCCAAACTTGATATCTGGGGCCACACAAGCTGACGCCGCAGTTCTTGTTATAGATGCATCTGTTGGTGCATTTGAGGCCGGTATGGACAGTTCAAAGGGGCAAACAAGGGAACATGTGCAATTAATTAGGAGCTTTGGTGTAGATCAGATTATTGTTGCAGTTAACAAAATGGATGTGGTGGAGTATTCCAAAGATCGATATGAATTTATTAAGCTGCAACTTGGAACCTTTATTCGTTCATGTGGTTATAAAGATTCATCATTGTCTTGGATTCCATTGAGTGCCATGGCAAATCAGAATCTAGTGACTGCCCCTTCTGATGTTCAATTTTTGTCCTGGTATCGTGGACCTAATCTTTTGGAGGCAATTGATTCCCTTCAACCACCCACTCGAGAATTCTCTAAGCCACTGCTTATGCCGATATGTGATGTAGTTAGATCACTTTCACTAGGACAAGTGTCTGCCTGTGGCAAACTGGAAGCTGGAGCTCTCCAGTCTGGATCTAAGATTCTAATCATGCCATCTGGAGATAAAGCAACAGTGCGCACTTTAGAACGCAATTCTCAGGCTTGCAAAATCGCAAGAGCGGGGGACAATGTGACTGTTACTCTACAAGGAGTTGAAGCAAGTAGCGTAATGGCTGGGGGTGTCCTATGCCATCCTGATTTTCCTGTTGCTGTTGCAAAACATTTGGAATTGAAGATCCTCACCTTGGAATTCGCAACACCGATATTAATAGGATCTCAGTTGGAAATTCATATACACCACGTGAAGGAGGCTGCTAGAGTTGCAAGAATAGTGTCATTGCTTGATTCAAAGACGGGAAAGGTGACGAAGAAGGCACCGCGTTGTCTTAGTGCTAAACAAAGTGCAGTGATTGAGGTCGTTTTACAAAGTCCAGTTTGTGTGGAAGCATTCTCGACTAGTCGAGCTCTCGGGCGGGTATTTCTGAGAACGATGGGCAGGACTATAGCCGTTGGCATTGTGACCCAACTAATCGGAGATCCTGAATAA 2352 42.22 MPRKVSHGLDYDEDYDEYDDYDYYDNDFDAEEKVTEKTPETKEETKGHKLWRCPICTYDNEDNFSVCDICGVLRNPLVNNRSPEDRTVENICKDSGVSKMAKSLFASLPNQIPKRAVKFQEQDDKIVEETEENIHEIGNIRGHLHEFHNAFSTCSHFRTNIVPFKFDIPSPDDVVSNGLRSSKVCLKAVSHNFNSSILTSDITKKSANNAALTSKSAHSSSTVLPMSNSGSIGDTQLSTKSSNKSGTSIGKSTMVIEEHNTSISVTKNFQPRDNRSSSTSTSKSAGKFDSLDESSHPSVEREKPQSLAGGLNNMVLNVKSAYANYISGLGKTSNVQYKHDKWMLPDKAVDTLTQLNLAIVGHVDSGKSTLSGRLLHLLGRVSQKEMHKYEKEAKSLGKGSFAYAWALDESAEERERGITMTVGVAYFDSKRYHVVVLDSPGHKDFVPNLISGATQADAAVLVIDASVGAFEAGMDSSKGQTREHVQLIRSFGVDQIIVAVNKMDVVEYSKDRYEFIKLQLGTFIRSCGYKDSSLSWIPLSAMANQNLVTAPSDVQFLSWYRGPNLLEAIDSLQPPTREFSKPLLMPICDVVRSLSLGQVSACGKLEAGALQSGSKILIMPSGDKATVRTLERNSQACKIARAGDNVTVTLQGVEASSVMAGGVLCHPDFPVAVAKHLELKILTLEFATPILIGSQLEIHIHHVKEAARVARIVSLLDSKTGKVTKKAPRCLSAKQSAVIEVVLQSPVCVEAFSTSRALGRVFLRTMGRTIAVGIVTQLIGDPE 783
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28922951 28930706 + Lsi04G021850.1 Lsi04g02185 662234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02185 783 Pfam Elongation factor Tu domain 2 603 665 IPR004161 GO:0005525
Lsi04g02185 783 Gene3D Translation factors 580 669 - -
Lsi04g02185 783 CDD HBS1_C_III 670 778 - -
Lsi04g02185 783 PRINTS GTP-binding elongation factor signature 415 423 IPR000795 GO:0003924|GO:0005525
Lsi04g02185 783 PRINTS GTP-binding elongation factor signature 435 445 IPR000795 GO:0003924|GO:0005525
Lsi04g02185 783 PRINTS GTP-binding elongation factor signature 356 369 IPR000795 GO:0003924|GO:0005525
Lsi04g02185 783 PRINTS GTP-binding elongation factor signature 451 462 IPR000795 GO:0003924|GO:0005525
Lsi04g02185 783 PRINTS GTP-binding elongation factor signature 496 505 IPR000795 GO:0003924|GO:0005525
Lsi04g02185 783 MobiDBLite consensus disorder prediction 213 288 - -
Lsi04g02185 783 SUPERFAMILY Translation proteins 574 669 IPR009000 -
Lsi04g02185 783 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 675 779 IPR009001 -
Lsi04g02185 783 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 338 586 IPR027417 -
Lsi04g02185 783 Gene3D - 345 576 IPR027417 -
Lsi04g02185 783 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 352 583 IPR000795 GO:0003924|GO:0005525
Lsi04g02185 783 ProSitePatterns Zinc finger RanBP2-type signature. 51 70 IPR001876 -
Lsi04g02185 783 PANTHER TRANSLATION FACTOR 53 781 - -
Lsi04g02185 783 Gene3D Translation factors 673 780 - -
Lsi04g02185 783 SUPERFAMILY Ran binding protein zinc finger-like 47 74 IPR036443 -
Lsi04g02185 783 CDD rubredoxin_like 51 72 - -
Lsi04g02185 783 MobiDBLite consensus disorder prediction 213 306 - -
Lsi04g02185 783 Pfam Elongation factor Tu GTP binding domain 355 572 IPR000795 GO:0003924|GO:0005525
Lsi04g02185 783 Pfam Elongation factor Tu C-terminal domain 677 778 IPR004160 -
Lsi04g02185 783 CDD EF1_alpha 356 575 - -
Lsi04g02185 783 PANTHER OS04G0595300 PROTEIN 53 781 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02185 Lsi-Chr4:28922951 Lsi09g01132 Lsi-Chr9:18223748 3.39E-93 dispersed
Lsi04g02185 Lsi-Chr4:28922951 Lsi10g01288 Lsi-Chr10:17113450 1.78E-93 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02185 K14416 - csv:101219939 1364.75