Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02186 ATGCCGGGGCTAACCTGTAATGCCTGTAACAAAGAATTTCTAGACGCTGAGGAGCAAAAGCTTCATTACAAGTCCGAATGGCATCGATACAATCTTAAGCGGAAGGTAGCTAATGTTCCTGGGGTTACAGAGGCATTGTTTTTAGCTAGACAATCTGCTGCTGCTGCACAGGAGAATGCCAAATCAAGAGAGACCTCAATGTTATACTCTTGTGGTCTTTGTAGCAAAGCTTATAGGAGTGCCCAGGCTCATGCCCAACATCTTAAATCTAGGAGTCACATCATCCGAGCTTCGCAAGGAGCACATGATCAAGAAGTTGAAAAGCCAATAATTAAGCCCCTTCCTCAGCGAATTTCCAATAAGGCACCTCAACAAAGTGAGGAGGAAGAGAGTGAGGAGGAGTGGGAAGAAGTCGATCCCGACGAAGACATGGTCGATGGAAATGAGGACCAGGATGATGATATTGATGACATTGAGGTGGACTTGAATCCATCACGCTGCTTCATGTGTGATCTAGAGCATGATACCATTGATGGTTGCATTGTCCACATGCATAAGCAACATGGATTCTTTATTCCTGACGTTGAATATTTGAAGGATCCAAAAGGCCTCCTTACATACCTCGGCCTGAAGGTGATGAGGGATTTCAGGTGTCTGTACTGCAATGATAATTGTCTTCCTTTTAGCAGCTTGGAAGCTGTTAGGAAGCATATGGAAGCAAAAAGCCATTGCAAGGTGCATTATGGTGATGAAGACGAGAATGAAGAAGTAGAATTGGAAGAATTTTATGATTACAGCAGCAGTTATGTGGATGGAAGTGGCAACCAGCTCGTACCCGCAGGTGCTCGGGACAATTCTGTCGAGTTTGGTAGTGGTGGAGCTGAGCTCATCTTAGTTCAAGGAAGCAGCGAACGCAAATCGATCAAAACACTTGGATCCAGGCAATTTCTACGTTATTATCGCCAGAAACCACGACCATCTCCTGCAAATGATGCAGCTATGACTGCTGTACAGGAGTATGGGATTGGCAACAGTCCAGTCAAGAGAAAAGATGATCAGGATGAAGGTAATGAAAGAAATGAATCGAACCGGGTTGGAAGCTATGCGTACCAAAATCGGATTGAAGAACAACGTGATCCGAAACCTGCCTAA 1152 44.79 MPGLTCNACNKEFLDAEEQKLHYKSEWHRYNLKRKVANVPGVTEALFLARQSAAAAQENAKSRETSMLYSCGLCSKAYRSAQAHAQHLKSRSHIIRASQGAHDQEVEKPIIKPLPQRISNKAPQQSEEEESEEEWEEVDPDEDMVDGNEDQDDDIDDIEVDLNPSRCFMCDLEHDTIDGCIVHMHKQHGFFIPDVEYLKDPKGLLTYLGLKVMRDFRCLYCNDNCLPFSSLEAVRKHMEAKSHCKVHYGDEDENEEVELEEFYDYSSSYVDGSGNQLVPAGARDNSVEFGSGGAELILVQGSSERKSIKTLGSRQFLRYYRQKPRPSPANDAAMTAVQEYGIGNSPVKRKDDQDEGNERNESNRVGSYAYQNRIEEQRDPKPA 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28931331 28935514 - Lsi04G021860.1 Lsi04g02186 662235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02186 383 Pfam C2H2 type zinc-finger (2 copies) 167 268 IPR041661 -
Lsi04g02186 383 MobiDBLite consensus disorder prediction 345 361 - -
Lsi04g02186 383 SMART ZnF_U1_5 1 35 IPR003604 GO:0003676|GO:0008270
Lsi04g02186 383 SMART ZnF_U1_5 66 100 IPR003604 GO:0003676|GO:0008270
Lsi04g02186 383 MobiDBLite consensus disorder prediction 111 156 - -
Lsi04g02186 383 SUPERFAMILY beta-beta-alpha zinc fingers 3 36 IPR036236 -
Lsi04g02186 383 SMART c2h2final6 165 188 IPR013087 -
Lsi04g02186 383 SMART c2h2final6 216 243 IPR013087 -
Lsi04g02186 383 SMART c2h2final6 4 28 IPR013087 -
Lsi04g02186 383 SMART c2h2final6 69 93 IPR013087 -
Lsi04g02186 383 ProSitePatterns Zinc finger C2H2 type domain signature. 71 93 IPR013087 -
Lsi04g02186 383 ProSitePatterns Zinc finger C2H2 type domain signature. 6 28 IPR013087 -
Lsi04g02186 383 SUPERFAMILY beta-beta-alpha zinc fingers 150 212 IPR036236 -
Lsi04g02186 383 MobiDBLite consensus disorder prediction 323 383 - -
Lsi04g02186 383 PANTHER CYTOPLASMIC 60S SUBUNIT BIOGENESIS FACTOR REI1 HOMOLOG 1-LIKE 1 339 - -
Lsi04g02186 383 MobiDBLite consensus disorder prediction 127 156 - -
Lsi04g02186 383 PANTHER ZINC FINGER PROTEIN 622 1 339 IPR040025 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02186 K14816 - csv:101219700 580.482