Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi04g02186 | ATGCCGGGGCTAACCTGTAATGCCTGTAACAAAGAATTTCTAGACGCTGAGGAGCAAAAGCTTCATTACAAGTCCGAATGGCATCGATACAATCTTAAGCGGAAGGTAGCTAATGTTCCTGGGGTTACAGAGGCATTGTTTTTAGCTAGACAATCTGCTGCTGCTGCACAGGAGAATGCCAAATCAAGAGAGACCTCAATGTTATACTCTTGTGGTCTTTGTAGCAAAGCTTATAGGAGTGCCCAGGCTCATGCCCAACATCTTAAATCTAGGAGTCACATCATCCGAGCTTCGCAAGGAGCACATGATCAAGAAGTTGAAAAGCCAATAATTAAGCCCCTTCCTCAGCGAATTTCCAATAAGGCACCTCAACAAAGTGAGGAGGAAGAGAGTGAGGAGGAGTGGGAAGAAGTCGATCCCGACGAAGACATGGTCGATGGAAATGAGGACCAGGATGATGATATTGATGACATTGAGGTGGACTTGAATCCATCACGCTGCTTCATGTGTGATCTAGAGCATGATACCATTGATGGTTGCATTGTCCACATGCATAAGCAACATGGATTCTTTATTCCTGACGTTGAATATTTGAAGGATCCAAAAGGCCTCCTTACATACCTCGGCCTGAAGGTGATGAGGGATTTCAGGTGTCTGTACTGCAATGATAATTGTCTTCCTTTTAGCAGCTTGGAAGCTGTTAGGAAGCATATGGAAGCAAAAAGCCATTGCAAGGTGCATTATGGTGATGAAGACGAGAATGAAGAAGTAGAATTGGAAGAATTTTATGATTACAGCAGCAGTTATGTGGATGGAAGTGGCAACCAGCTCGTACCCGCAGGTGCTCGGGACAATTCTGTCGAGTTTGGTAGTGGTGGAGCTGAGCTCATCTTAGTTCAAGGAAGCAGCGAACGCAAATCGATCAAAACACTTGGATCCAGGCAATTTCTACGTTATTATCGCCAGAAACCACGACCATCTCCTGCAAATGATGCAGCTATGACTGCTGTACAGGAGTATGGGATTGGCAACAGTCCAGTCAAGAGAAAAGATGATCAGGATGAAGGTAATGAAAGAAATGAATCGAACCGGGTTGGAAGCTATGCGTACCAAAATCGGATTGAAGAACAACGTGATCCGAAACCTGCCTAA | 1152 | 44.79 | MPGLTCNACNKEFLDAEEQKLHYKSEWHRYNLKRKVANVPGVTEALFLARQSAAAAQENAKSRETSMLYSCGLCSKAYRSAQAHAQHLKSRSHIIRASQGAHDQEVEKPIIKPLPQRISNKAPQQSEEEESEEEWEEVDPDEDMVDGNEDQDDDIDDIEVDLNPSRCFMCDLEHDTIDGCIVHMHKQHGFFIPDVEYLKDPKGLLTYLGLKVMRDFRCLYCNDNCLPFSSLEAVRKHMEAKSHCKVHYGDEDENEEVELEEFYDYSSSYVDGSGNQLVPAGARDNSVEFGSGGAELILVQGSSERKSIKTLGSRQFLRYYRQKPRPSPANDAAMTAVQEYGIGNSPVKRKDDQDEGNERNESNRVGSYAYQNRIEEQRDPKPA | 383 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 28931331 | 28935514 | - | Lsi04G021860.1 | Lsi04g02186 | 662235 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi04g02186 | 383 | Pfam | C2H2 type zinc-finger (2 copies) | 167 | 268 | IPR041661 | - | |
Lsi04g02186 | 383 | MobiDBLite | consensus disorder prediction | 345 | 361 | - | - | |
Lsi04g02186 | 383 | SMART | ZnF_U1_5 | 1 | 35 | IPR003604 | GO:0003676|GO:0008270 | |
Lsi04g02186 | 383 | SMART | ZnF_U1_5 | 66 | 100 | IPR003604 | GO:0003676|GO:0008270 | |
Lsi04g02186 | 383 | MobiDBLite | consensus disorder prediction | 111 | 156 | - | - | |
Lsi04g02186 | 383 | SUPERFAMILY | beta-beta-alpha zinc fingers | 3 | 36 | IPR036236 | - | |
Lsi04g02186 | 383 | SMART | c2h2final6 | 165 | 188 | IPR013087 | - | |
Lsi04g02186 | 383 | SMART | c2h2final6 | 216 | 243 | IPR013087 | - | |
Lsi04g02186 | 383 | SMART | c2h2final6 | 4 | 28 | IPR013087 | - | |
Lsi04g02186 | 383 | SMART | c2h2final6 | 69 | 93 | IPR013087 | - | |
Lsi04g02186 | 383 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 71 | 93 | IPR013087 | - | |
Lsi04g02186 | 383 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 6 | 28 | IPR013087 | - | |
Lsi04g02186 | 383 | SUPERFAMILY | beta-beta-alpha zinc fingers | 150 | 212 | IPR036236 | - | |
Lsi04g02186 | 383 | MobiDBLite | consensus disorder prediction | 323 | 383 | - | - | |
Lsi04g02186 | 383 | PANTHER | CYTOPLASMIC 60S SUBUNIT BIOGENESIS FACTOR REI1 HOMOLOG 1-LIKE | 1 | 339 | - | - | |
Lsi04g02186 | 383 | MobiDBLite | consensus disorder prediction | 127 | 156 | - | - | |
Lsi04g02186 | 383 | PANTHER | ZINC FINGER PROTEIN 622 | 1 | 339 | IPR040025 | - |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi04g02186 | K14816 | - | csv:101219700 | 580.482 |