Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02188 ATGTCATCATACTTCTCTCCACCGAGTGACAATGGCGAAAGCAATTCTGGAGGAACTGTTATATATGTAGTTTTGAGCTTTGTGATTTTTGCTGTCATTGGTGCAATCTCTTGCTGCTTTGCTAGAAAAGTGAGGCAAGGTATTGTAAACGAGTTGCAAAATGTAGTTGCTTCAGCTGCACCAAATGTGGCACATTCACCTCTTCCAAATGTAGTTCAGACTTGGGAAATCGATCAACCGACAATGGAAAAGTTCATCCGAGAAATGGCGGAAGAAAGGCCTGTAAGGTTCACTCCTCAACAACTATATTGTTTCACGAGAAATTATTCAGCACCACTCGGGTCTGGAGGATTCGGTACGGTCTACAAAGGTCAGTTTCCAAATGAGGCAAAGATCGCTGTGAAGGTTTTGAAGAGGAACTCAGACCGGCAGGCGGAGGAACAATTTATGGCTGAGGTAGGAACAATTGGTAGAACTTATCATATAAACTTGGTTAGACTTTATGGTTTTTGTTATGACCAATATATGAGTGCATTAGTATTTGAGTACATGGAAAATGGATCTTTGGATAAGTATTTGTTTGGCAAAAATCAAGAAATTGATTGGGGGAAGTCACATGATGTAGCCATTGGGACTGCTAAAGGTCTTGCTTACTTGCATGAGGAATGCCAACAGAGAATCATTCATTATGACATAAAGCCTGCTAACATTCTTTTGGATGCAAATTTCTCTCCCAAAGTTGGTGATTTTGGCCTTGCCAAGCTTTGCAACAGGGATAGTACCCACATATCTCTCACTGGTTATCGAGGCACACCGGGATATTCAGCGCCCGAGTTCTTGACTAGTAATTATCCGATAACGCACAAATGTGATGTATATAGCTTCGGAATGGTATTGTTTGAGATTGTTGGAAAAAAAAGGAATGCTGGAGTTACGAATTCTGGGAACCCTGATTGGTTTCCACAACATGTTTGGGAGAATTATGAAAAGGGTAAACTAGAAGAATTTATTCGAACGTGTGGCATTGAAGAGAACGATAAAGAGAAAGCAAACAGAATGTGCAAGGTTGCTTTGTGGTGTGTTCAAGACTCTCCAGACGACCGACCGCCGATGAGCACAGTGGTGAGGATGCTTGAAGGAGGTGTAGAAATAATGCCACCACCAAAGCCATTTCTTTACTTGAATCCATTTCCAAAAAGGAACAGTAAACTGAATCTGCAGCAAACTAGTATTAGTTCAGATTGTTCAACTTCCAATGAAGAAAGTGGTTCATTTTGGTACAAGAAGGCTACTCCAATGATGAAGAAATACGAAATACAGATAGCTAGTTCTTGA 1335 40.82 MSSYFSPPSDNGESNSGGTVIYVVLSFVIFAVIGAISCCFARKVRQGIVNELQNVVASAAPNVAHSPLPNVVQTWEIDQPTMEKFIREMAEERPVRFTPQQLYCFTRNYSAPLGSGGFGTVYKGQFPNEAKIAVKVLKRNSDRQAEEQFMAEVGTIGRTYHINLVRLYGFCYDQYMSALVFEYMENGSLDKYLFGKNQEIDWGKSHDVAIGTAKGLAYLHEECQQRIIHYDIKPANILLDANFSPKVGDFGLAKLCNRDSTHISLTGYRGTPGYSAPEFLTSNYPITHKCDVYSFGMVLFEIVGKKRNAGVTNSGNPDWFPQHVWENYEKGKLEEFIRTCGIEENDKEKANRMCKVALWCVQDSPDDRPPMSTVVRMLEGGVEIMPPPKPFLYLNPFPKRNSKLNLQQTSISSDCSTSNEESGSFWYKKATPMMKKYEIQIASS 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28942130 28943830 + Lsi04G021880.1 Lsi04g02188 662237

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02188 444 SUPERFAMILY Protein kinase-like (PK-like) 97 409 IPR011009 -
Lsi04g02188 444 PANTHER RECEPTOR SERINE/THREONINE KINASE 73 421 - -
Lsi04g02188 444 ProSitePatterns Protein kinases ATP-binding region signature. 113 135 IPR017441 GO:0005524
Lsi04g02188 444 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Lsi04g02188 444 SMART serkin_6 107 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g02188 444 Pfam Protein tyrosine and serine/threonine kinase 111 378 IPR001245 GO:0004672|GO:0006468
Lsi04g02188 444 ProSiteProfiles Protein kinase domain profile. 107 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g02188 444 PANTHER RUST RESISTANCE KINASE LR10-RELATED 73 421 IPR045874 GO:0004672
Lsi04g02188 444 Gene3D Transferase(Phosphotransferase) domain 1 184 384 - -
Lsi04g02188 444 Gene3D Phosphorylase Kinase; domain 1 80 183 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02188 - - - csv:101219459 776.933
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02188 Lsi-Chr4:28942130 Lsi08g01207 Lsi-Chr8:20602006 2.17E-87 dispersed
Lsi04g02187 Lsi-Chr4:28937145 Lsi04g02188 Lsi-Chr4:28942130 0 tandem
Lsi04g02188 Lsi-Chr4:28942130 Lsi04g02189 Lsi-Chr4:28945214 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g210 . . . . Bpe02g01248 . . . . . . . Car09g00450 . . . Cpe06g00388 . . . . . . . Cla05g01795 . . . . . . . . . . Lsi04g02188 Csa03g04396 Chy04g00306 . . . Bda01g01002 . . . . . . . Cmo09g00514 . . . . . . Bhi09g02350 . . . Hepe01g2080 Mch11g0619 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000610 0 8 0 0 0 4 2 4 5 4 3 4 3 4 3 3 4 2 3 1 4 2 3 5 5 3 5 7 7 4 102
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83611 PF07714 PK_Tyr_Ser-Thr 1.40E-47 CL0016 Lsi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02188 Lsi_Chr04 FPKM 149.427795 138.946289 121.377045 115.121262 44.205956 40.94212 44.74609 124.199997 128.457153 139.141174