Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02190 ATGGCGTCTTTCCCTACATATCGTGAAGCCGCAGGGTTAAGATCCGGCGGGAAAATTGTTCGAGCTAGGCGAGTTCGTAGTAGAAATACTCCTTATGAGCGTCCTGGACCTTCGAATTTGGGCCCTGGAGGAATCCCTAGTTGGATCTCCAAGTTCATTTTCTCGCCTACTCTTACCATTGCTACCGGCGCCGGAAAATTGCTCTCTTCTGTCTTCGTTTCCGATTCCTCGTCCTCCTCTTCAGACAGTGATTCAGAAGATGACGATGAAGACGACGTGCGTGATGAAAATCGTGTCTTCCAAGGAGCTGAAGGAGTGAAGAAGAATGGGACATCGGAGATGGTCAACTTATTTAGGAAGGACTTTCCACCAGAGAAAAAAGATAGCAAGCATCTAATTGAACAGCTCTTGATGCAGGAGACCTTCTCTAGGGCAGAGCGTGACAAGTTATTTCAGATAATTGAATCAAGGGTTGTAGAATGTCAAACCATTGAAGGCCAGGCTGCAGGGAGGCTGACCGAGATATCAAACAGAGCCGTTGATAGTGATGATGGCAGGCCTGCAGTCTGCAGCACAGCAATTCTCGAGGCAAAAAAATGGTTGAATGAAAAACGATTGGGACTGGGGTCTACTTCAACATTGAAATTGGATGATGGGCCATGCACCTTGAATTCCACGATGTTGCCAGTGGTCCACAATGAAGAGATGGGTTCACCTGTAGATGTAGCCAAATCATACATGCAGGCGCGTCCTCCATGGGCCTCTCCTTCCACAAATAATTTTGAGTTCAAGTCTCCTTCACCATTAGGGTTACAGCTTTTCAAAGAAGAAACATCATATTCAATTAGTGGAAATCCACTGTCTTCATCTAGGATTAAAAGGGAATCTCCTGCCAGTGGATCATGGAACATCCAGGAGGAAATACGACGTGTGCGATCTAAAGCAACTGAAGAAATGCTAAGAACTCCATCTGCCAAACTTGATTGGTCTTCATTTGCCTCAGACTACAAAAGTAATTTGAGTTCTGCACGTTCTGACTATCTGAAACTTCCCAGTGGAGATAAAATGCAGCATGCTGTAAAGTCAATAGATAAATCAATGAATTGGTCTGCTGACAATACTGTCACTCATAACTTATCAGAGTCGAAGACTGCGCAAGATGTGTCAGAAAATGAAACTTGCCTACTTGGTACGACAAGCATTGTTCTGCAACAGGATAAGGTAACAGACTCCCAGAAGGGCTTTGTTGGGCCTCCAGCTGTGAACGTTCTCGAGTGTAGGGAAGTGACCAGCCCTCTTAAATTGACCGAGTGTTATGATTTGGAAACCAATCCTACCACTGAAGGGAAAGTATCAAATTCAAGTTTAGATGAGAGAGAATGCTCTACAGTGCACGAAGATGTGGGGCTGGCCAACGGTTTTCCTCCGTTACCTAGTTCTTCTTGGGAGCTTGCTGTAGAACAGAACCATGTTGACAATATATTTGAGGAAAACAATTCATCAGGTCATGACCACGAGGCGAAAGAACCCTCTGTGGTGGAGCGATGCGAACTATTAAGTGAAGTGTCCATGGATGTTCCAGATGTGAACGAAAACAATACCGATAAAGTTATATTGGACGGAAGTGATGCGAGTAAAGTTGTATCAGAAGGCAATGGCAACGGAAACGGTAAAATCTCCTCAGAAGAAAATGGTGCTGGTAATGTTAATACAGTAGAGAAGCGAAGTTCACAAAGCAGCGTAGCAGCAGGGAAGACTGGGGGTGGAACGGCGTACCTGCGACGGGGAAGACGAAGAAACTGA 1803 45.2 MASFPTYREAAGLRSGGKIVRARRVRSRNTPYERPGPSNLGPGGIPSWISKFIFSPTLTIATGAGKLLSSVFVSDSSSSSSDSDSEDDDEDDVRDENRVFQGAEGVKKNGTSEMVNLFRKDFPPEKKDSKHLIEQLLMQETFSRAERDKLFQIIESRVVECQTIEGQAAGRLTEISNRAVDSDDGRPAVCSTAILEAKKWLNEKRLGLGSTSTLKLDDGPCTLNSTMLPVVHNEEMGSPVDVAKSYMQARPPWASPSTNNFEFKSPSPLGLQLFKEETSYSISGNPLSSSRIKRESPASGSWNIQEEIRRVRSKATEEMLRTPSAKLDWSSFASDYKSNLSSARSDYLKLPSGDKMQHAVKSIDKSMNWSADNTVTHNLSESKTAQDVSENETCLLGTTSIVLQQDKVTDSQKGFVGPPAVNVLECREVTSPLKLTECYDLETNPTTEGKVSNSSLDERECSTVHEDVGLANGFPPLPSSSWELAVEQNHVDNIFEENNSSGHDHEAKEPSVVERCELLSEVSMDVPDVNENNTDKVILDGSDASKVVSEGNGNGNGKISSEENGAGNVNTVEKRSSQSSVAAGKTGGGTAYLRRGRRRN 600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28954888 28962975 + Lsi04G021900.1 Lsi04g02190 662239

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02190 600 MobiDBLite consensus disorder prediction 547 585 - -
Lsi04g02190 600 PANTHER PROTEIN KAKU4 1 573 - -
Lsi04g02190 600 MobiDBLite consensus disorder prediction 1 42 - -
Lsi04g02190 600 PANTHER - 1 573 - -
Lsi04g02190 600 MobiDBLite consensus disorder prediction 545 600 - -
Lsi04g02190 600 MobiDBLite consensus disorder prediction 75 94 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02190 - - - csv:101212538 882.093
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02190 Lsi-Chr4:28954888 Lsi06g00980 Lsi-Chr6:19773236 4.27E-06 dispersed
Lsi04g02190 Lsi-Chr4:28954888 Lsi08g00629 Lsi-Chr8:14639558 1.13E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g207 . . . Bda03g00039 . . Bma04g00038 . . . . . Car09g00451 . . . Cpe06g00389 . . . . . . . Cla05g01797 Cam05g1919 Cec05g1930 Cco05g1992 Clacu05g1911 Cmu05g1791 Cre05g1919 . . . . Lsi04g02190 Csa03g04400 Chy04g00300 . . . . . . Bpe04g00029 . . Sed05g1643 . Cmo09g00515 . . Car01g01187 . . . Bhi09g02359 Tan01g3728 Cmetu04g2755 . Hepe01g2083 Mch11g0623 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010103 0 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02190 Lsi_Chr04 FPKM 0.597222 0.0 0.0 0.0 0.0 0.0 0.0 0.101869 0.280169 0.0