Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02191 ATGGCCAGCCCTATCACTCTCCAAGAGATTCGAAACGAGTCTGTTGATCTGGAACGTATTCCCATCGACGATGTGTTCGAGAAGCTGAAATGTTCAAAAGAAGGCCTCACTTCAGAGGAAGGGGCTAATCGGCTTCAAGTTTTTGGACCCAACAAACTCGAAGAGAAAAAGGAAAGCAAAATTCTGAAATTTCTGGGGTTTATGTGGAATCCCCTTTCTTGGGTCATGGAAGTAGCTGCTATAATGGCTATTGTCTTAGCAAACGGCGGTGGAAGGCCTTCGGACTGGCAGGATTTTATCGGAGTCATTGCCCTGCTTTTCATCAACTCAACCATTTCTTTTATTGAAGAGAATAATGCAGGAAATGCAGCTGCTGCCCTTATGGCTGGTCTTGCTCCCAAAACGAAGATCTTAAATCTTTGCAATTCCAGCGAAGCCATCAGGAAAAGAGTTCATGGAGTGATTGATAAGTTTGCTGAATGTGGACTCCGATCCCTTGGTGTTGCCAGACAGGAAGTACCTGAGAGAACCAAAGAAAGTCCAGGAGAACCATGGGAACTTGTTGGTCTATTAGCTCTGTTTGATCCTCCTAGGCATGATAGTGCAGAAACTATCCGAAGGGCTCTGAACCTTGGAGTAAATGTCAAGATGATTACTGGGGATCAACTGGCCATTGCCAAGGAAACCGGGCGGAGACTTGGTATGGGATCAAATATGTACCCTTCATCTGCATTACTTTCTCAAGACAGGGGTGCATCAGCAGATTCCCTTCCTGTAGACGAGTTGATTGAAACAGCTGATGGGTTTGCTGGTGTATTTCCAGAACACAAATATGAAATTGTGAGAAAGTTACAAGAGAAGAAACATATTTGTGGAATGACTGGAGATGGCGTAAATGATGCCCCTGCACTAAAAAAGGCCGATATTGGAATTGCTGTTGCTGATGCAACTGATGCGGCTAGGGGCGCTTCTGACATTGTCCTCACTGAACCTGGATTGAGTGTCATAATTAGTGCAGTACTGACCAGTAGGGCAATTTTCCAAAGGATGAAGAATTATACGATTTATGCTGTTTCCATCACCATTCGTATAGTGTTTGGTTTTCTGTTGATTGCTTTGATTTGGAAGTTTGATTTCGCTCCATTCATGGTTTTAATCATAGCTATTCTTAACGATGGAACAATCATGACTATTTCGAAGGATCGAGTTAAGCCTTCTCCACAGCCTGACAGCTGGAAGTTGAAGGAAATTTTTGCTACTGGCATCGTGTTAGGAGGATACTTGGCCTTGATGACAGTGTTGTTCTTTTGGATCATGAAAGATAGTGACTTTTTCACGAACACGTTCAATGTACCATCTCTAAGGAACAACGACCCAAAAATGATGGCAGCATTGTATCTACAAGTCAGTATCGTGAGTCAGGCCCTTATTTTTGTCACACGGTCTCGAAGTTGGTCATTCGTCGAACGTCCTGGAATTTTCCTAGTAGTTGCTTTCATAATTGCCCAGCTGATCGCAACTATAATAGCAGTGTATGGAAACTGGAATTTTGCAAGGATGCATGGCGCTGGCTGGGGATGGGCTGGTGTCATTTGGCTATACAGTTTAATAACTTATATCCCTCTTGATATTCTCAAATTTACCATTCGCTATGCTCTCAGTGGAAGAGCTTGGAACAACCTTTTGCAAAATAAGACTGCTTTCACAACAAAGAAAGATTATGGCAAAGAAGAGAGAGAAGCACAATGGGCTACTACACAAAGAACTATCCATGGTCTTCAACCACCTCAACCCAGCAACACTGCTTCTGATAGAATCAGTTGTGGCGGCGAGCTTTCCGAAATCGCCGAGCAAGCCAAGCGACGAGCTGAAATTGCAAGACTCCGTGAATTGCACACTCTGAAAGGCCGGGTCGAGTCGGTAGTGAAGCTGAAAGGTCTAGACATTGATACTATTAATCAACATTATACGGTCTAG 1977 43.65 MASPITLQEIRNESVDLERIPIDDVFEKLKCSKEGLTSEEGANRLQVFGPNKLEEKKESKILKFLGFMWNPLSWVMEVAAIMAIVLANGGGRPSDWQDFIGVIALLFINSTISFIEENNAGNAAAALMAGLAPKTKILNLCNSSEAIRKRVHGVIDKFAECGLRSLGVARQEVPERTKESPGEPWELVGLLALFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGSNMYPSSALLSQDRGASADSLPVDELIETADGFAGVFPEHKYEIVRKLQEKKHICGMTGDGVNDAPALKKADIGIAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFLLIALIWKFDFAPFMVLIIAILNDGTIMTISKDRVKPSPQPDSWKLKEIFATGIVLGGYLALMTVLFFWIMKDSDFFTNTFNVPSLRNNDPKMMAALYLQVSIVSQALIFVTRSRSWSFVERPGIFLVVAFIIAQLIATIIAVYGNWNFARMHGAGWGWAGVIWLYSLITYIPLDILKFTIRYALSGRAWNNLLQNKTAFTTKKDYGKEEREAQWATTQRTIHGLQPPQPSNTASDRISCGGELSEIAEQAKRRAEIARLRELHTLKGRVESVVKLKGLDIDTINQHYTV 658
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28965266 28970766 + Lsi04G021910.1 Lsi04g02191 662240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02191 658 Pfam Cation transporter/ATPase, N-terminus 20 82 IPR004014 -
Lsi04g02191 658 SUPERFAMILY Calcium ATPase, transmembrane domain M 16 553 IPR023298 -
Lsi04g02191 658 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 137 200 IPR023299 GO:0000166
Lsi04g02191 658 Gene3D - 67 152 - -
Lsi04g02191 658 Gene3D - 295 552 - -
Lsi04g02191 658 PANTHER CALCIUM-TRANSPORTING ATPASE 137 638 - -
Lsi04g02191 658 PRINTS H+-transporting ATPase (proton pump) signature 325 350 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi04g02191 658 PRINTS H+-transporting ATPase (proton pump) signature 294 310 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi04g02191 658 PRINTS H+-transporting ATPase (proton pump) signature 151 169 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi04g02191 658 PRINTS H+-transporting ATPase (proton pump) signature 466 487 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi04g02191 658 PRINTS H+-transporting ATPase (proton pump) signature 266 282 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi04g02191 658 PANTHER PLASMA MEMBRANE ATPASE 137 638 - -
Lsi04g02191 658 PANTHER PLASMA MEMBRANE ATPASE 3 138 - -
Lsi04g02191 658 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 269 384 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi04g02191 658 PRINTS P-type cation-transporting ATPase superfamily signature 294 313 - -
Lsi04g02191 658 PRINTS P-type cation-transporting ATPase superfamily signature 317 329 - -
Lsi04g02191 658 PRINTS P-type cation-transporting ATPase superfamily signature 189 200 - -
Lsi04g02191 658 PRINTS P-type cation-transporting ATPase superfamily signature 211 221 - -
Lsi04g02191 658 Gene3D - 610 658 - -
Lsi04g02191 658 Pfam haloacid dehalogenase-like hydrolase 186 308 - -
Lsi04g02191 658 SUPERFAMILY HAD-like 186 340 IPR036412 -
Lsi04g02191 658 PANTHER CALCIUM-TRANSPORTING ATPASE 3 138 - -
Lsi04g02191 658 SMART Cation_ATPase_N_a_2 16 88 IPR004014 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02191 Lsi-Chr4:28965266 Lsi11g00770 Lsi-Chr11:8790027 0 dispersed
Lsi04g02191 Lsi-Chr4:28965266 Lsi08g01132 Lsi-Chr8:19941870 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02191 K01535 - csv:101219224 946.036