Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02192 ATGAAAATCCAAACTTTTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTCAACTTGCTGTTTTGCTAAGCTTCATCTCAACTATTACCAAAATTCATGTCCAAATGTTGAGTCCATTGTAAGAAGTGCAGTCAAACTGAAATTTCAACAAACTTTTGTCACTGCCCCTGCCACTCTAAGGCTCTTCTTTCATGATTGTTTTGTCAGGGGTTGTGATGCTTCTGTGTTGATTCAAACAAATAACCACACTTCTGAGAAAGATAATGCAGAGAATCTTTCCCTCGCCGGAGATGGGTTCGACACCGTCATCAAAGCTAAAGCCGCCGTCGATAGTGTGCCGGGATGTAAGAATAAGGTCTCTTGTGCTGACATATTGGCTTTGGCTACTAGAGATGTTGTAGCTTTGACAGGAGGACCGTCGTATGTCGTCGAGTTGGGAAGACGAGATGGACGAATCTCGACGAGAAAGAGCGTTCGACATCATCTTCCTCAGCCTGATTTTGGATTAAATCAACTCAATGCCATGTTTGCAAAACATGGTCTAACTCAAACAGATATGATTGCTCTCTCAGGTAAGAGTAAACTTACAAATTTGAAGAATTTTGGGAAAGGTGCACATACGATTGGATTCTCACATTGCAAGCACTTTTCCAAAAGGCTATATAGTTTCCACAGCAAAAACAGAATCGACCCGACGTTCAATCCAACGTACGTCGACGAGCTCAAGAAGGAATGCCCGAGAAACGTCGACCAGAGAATCGCTATCGACATGGATTCAACGTCGTCGTTCACATTCGACAACATGTACTTCAAGAATCTACAAGTGGGAAAAGGATTGTTCACTTCAGACCAAGTATTGTTCACTGATCCAAGATCAAGAAAAACAGTGAACTTATTTGCTTCCAACAATACAGCTTTTGAGGAGGCTTTTGTAGTTGCAATGACAAAGCTTGGGAGAGTTGGAGTCAAAACAAGAAACCAAGGGGAGATTAGAATTGACTGTTCATCAGTGAACTAA 1023 41.54 MKIQTFPLLLLLLLLLLLSTCCFAKLHLNYYQNSCPNVESIVRSAVKLKFQQTFVTAPATLRLFFHDCFVRGCDASVLIQTNNHTSEKDNAENLSLAGDGFDTVIKAKAAVDSVPGCKNKVSCADILALATRDVVALTGGPSYVVELGRRDGRISTRKSVRHHLPQPDFGLNQLNAMFAKHGLTQTDMIALSGKSKLTNLKNFGKGAHTIGFSHCKHFSKRLYSFHSKNRIDPTFNPTYVDELKKECPRNVDQRIAIDMDSTSSFTFDNMYFKNLQVGKGLFTSDQVLFTDPRSRKTVNLFASNNTAFEEAFVVAMTKLGRVGVKTRNQGEIRIDCSSVN 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28971877 28973492 - Lsi04G021920.1 Lsi04g02192 662241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02192 340 Gene3D Peroxidase, domain 2 165 319 - -
Lsi04g02192 340 Gene3D - 29 340 - -
Lsi04g02192 340 PANTHER - 7 340 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi04g02192 340 PRINTS Haem peroxidase superfamily signature 260 275 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi04g02192 340 PRINTS Haem peroxidase superfamily signature 57 71 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi04g02192 340 PRINTS Haem peroxidase superfamily signature 200 215 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi04g02192 340 PRINTS Haem peroxidase superfamily signature 121 138 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi04g02192 340 PRINTS Haem peroxidase superfamily signature 139 151 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi04g02192 340 ProSiteProfiles Plant heme peroxidase family profile. 25 340 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi04g02192 340 PRINTS Plant peroxidase signature 186 198 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi04g02192 340 PRINTS Plant peroxidase signature 99 112 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi04g02192 340 PRINTS Plant peroxidase signature 139 154 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi04g02192 340 PRINTS Plant peroxidase signature 59 79 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi04g02192 340 PRINTS Plant peroxidase signature 120 130 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi04g02192 340 PRINTS Plant peroxidase signature 35 54 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi04g02192 340 PRINTS Plant peroxidase signature 314 327 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi04g02192 340 PRINTS Plant peroxidase signature 274 291 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi04g02192 340 PRINTS Plant peroxidase signature 258 273 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi04g02192 340 PANTHER PEROXIDASE 7 340 - -
Lsi04g02192 340 ProSitePatterns Peroxidases active site signature. 57 68 IPR019794 GO:0004601
Lsi04g02192 340 CDD secretory_peroxidase 25 339 IPR033905 GO:0004601|GO:0042744
Lsi04g02192 340 Pfam Peroxidase 43 304 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi04g02192 340 SUPERFAMILY Heme-dependent peroxidases 26 340 IPR010255 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00400 Lsi-Chr3:4580677 Lsi04g02192 Lsi-Chr4:28971877 1.38E-128 dispersed
Lsi03g00401 Lsi-Chr3:4590150 Lsi04g02192 Lsi-Chr4:28971877 4.41E-131 dispersed
Lsi04g02192 Lsi-Chr4:28971877 Lsi10g00515 Lsi-Chr10:7360540 3.87E-118 dispersed
Lsi04g02192 Lsi-Chr4:28971877 Lsi02g00351 Lsi-Chr2:3006170 1.73E-86 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02192 K00430 - csv:101218982 601.668