Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02193 ATGCAACCTCAGCACAGCTCCAGAATTGATTTAGGCGACTTGAAAGCTCAGATAGTTAAAAAACTTGGAAATGACAAGTCCAAGCGGTACTTCTTCTACTTGAGTAGATTTTTGGGTCAGAAGCTGAGCAAGGTTGAATTTGATAAGATGTGCGTTCGTGTACTTGGAAGGGAAAATATTCAGCTCCACAATCAATTGATAAGGTCAATTTTGAAGAATGCATGTGTAGCCAAGACCCCACCACCAATTAATGTGTCAGGACACGCTCAATCTGTTCTACAAGCTTCGAACAACTCTCCTTGCAGGGAAGATGGCCCTGAACAAACTGGATCTGCCTTCCCAAATCAGAATCAGAGTATACCAATTTGGCCAAATGGAGTTCTTCCAGCATCCCCGCGGAAGGGTAGATCTGTCTTACGTGGAAAGTTTAGGGATAGGCCAAGTCCACTTGGTCCAAATGGAAAAATCACATGTCTTTCGTATCAATCAACTGGTACTGAAGATAGCAGCAGCAAAGTTATTACAGAGAATGGTAATGTAACCATGTGTGACTATCAGAGACCGGTACAGCATCTCCAAGCAGTAGCTGAGCTACCTGAGAATGACATAGATGGAGCAGTTCAGCGGCCATCAGAAAAACCAAGGATACATCCAACAGAAGCAGCTAATCTTGAAGAAGGAGAGGAGGTGGAACAGTCGGATCCCTTAAGCTTCCTTAGTGGTCCTCTACTTCCACCTCTTGGTATTCCATTTTGTTCAGCTAGTGTAGGTGGGGCGCGCAAGGCCTTGCCAGTCAGCAGTAGTGGCAGTAGTGGTGATTTTATGAGTTGTTATGACAGTATTGGATTGTCTGATTCAGAGACAGTGAGAAAACGCATGGAGCAAATTGCAACTGCACAAGGGCTTGAAGGTGTTTCTATGGAATGTCCTAACATCCTGAATAATACTCTGGATTTGTACCTGAAGCAATTGATAAAGTCTTGCCTTGAGTTGGTGAGAGCAAGGTCTACATTTGAACATATGGGGCACCCTATCCAGAAGCAACAGAATCAAGGGAAGGTTATAAATGGGATGTGGCCTACTAACCACCTACGCGTACAGAATAGCAATGGGCGATCTGAAGTTTTGCAGGAAAAGAGTTTAGAATGCTCAGTGTCATTGCTTGATTTCAAAGTTGCTATGGAGCTTAATCCAAAGCAGCTTGGGGAAGATTGGCCTTTGCTGTTGGAGAAAATTTGTATGCGTGCCTTTGAGGAATAA 1260 43.89 MQPQHSSRIDLGDLKAQIVKKLGNDKSKRYFFYLSRFLGQKLSKVEFDKMCVRVLGRENIQLHNQLIRSILKNACVAKTPPPINVSGHAQSVLQASNNSPCREDGPEQTGSAFPNQNQSIPIWPNGVLPASPRKGRSVLRGKFRDRPSPLGPNGKITCLSYQSTGTEDSSSKVITENGNVTMCDYQRPVQHLQAVAELPENDIDGAVQRPSEKPRIHPTEAANLEEGEEVEQSDPLSFLSGPLLPPLGIPFCSASVGGARKALPVSSSGSSGDFMSCYDSIGLSDSETVRKRMEQIATAQGLEGVSMECPNILNNTLDLYLKQLIKSCLELVRARSTFEHMGHPIQKQQNQGKVINGMWPTNHLRVQNSNGRSEVLQEKSLECSVSLLDFKVAMELNPKQLGEDWPLLLEKICMRAFEE 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28981800 28983059 + Lsi04G021930.1 Lsi04g02193 662242

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02193 419 MobiDBLite consensus disorder prediction 206 224 - -
Lsi04g02193 419 MobiDBLite consensus disorder prediction 94 116 - -
Lsi04g02193 419 MobiDBLite consensus disorder prediction 206 237 - -
Lsi04g02193 419 Pfam Transcriptional regulator of RNA polII, SAGA, subunit 5 332 IPR024738 GO:0070461
Lsi04g02193 419 PANTHER TRANSCRIPTIONAL REGULATOR OF RNA POLII, SAGA, SUBUNIT 1 419 - -
Lsi04g02193 419 PANTHER TRANSCRIPTIONAL ADAPTER 1 1 419 IPR024738 GO:0070461
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02193 - - - csv:101212293 778.474
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01032 Lsi-Chr3:19886097 Lsi04g02193 Lsi-Chr4:28981800 6.42E-57 transposed
Lsi04g02193 Lsi-Chr4:28981800 Lsi08g01129 Lsi-Chr8:19929935 3.83E-163 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g202 . . . Bda03g00038 . . Bma04g00036 Bma01g02126 . Cmo12g00244 . Cma05g00630 Car09g00452 Car12g00276 . Cpe07g00252 Cpe06g00390 . . . . . . . Cla05g01801 Cam05g1922 Cec05g1933 Cco05g1995 Clacu05g1914 Cmu05g1794 Cre05g1922 . Cone7ag1762 . . Lsi04g02193 Csa03g04403 Chy04g00297 . . . . Bda13g01297 . Bpe04g00027 Bma01g01311 Bma02g00055 Sed05g1640 . Cmo09g00516 . Cma12g00292 Car01g01190 . . . Bhi09g02364 Tan01g3733 Cmetu04g3237 . . . . . . . . . . . . . Chy03g01192 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001290 3 3 3 4 3 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 5 2 1 76
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02193 Lsi_Chr04 FPKM 33.586884 38.69659 13.143248 12.706621 4.243797 4.386629 4.222061 0.236933 0.257736 0.348905