Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02195 ATGGATGGGTATTCCAGTAAAAGAGTTCATGTGGGAATTGTTTCTAGGAAGGGACCTGGTCTAGTTTTGAGGGATAACATGAAGCACCGAGATCAAAGTAATCAATATGGCAACCGACTTGGCTGCACTGACAGGATATGCTCCAGTAGTGGTGCACAAGTTGGCTGTTCAAATAAATCCAGCTCAAAAAAACCATTCCGCAGCTCAAGTGGTAAAGAAGTTGTTGGAAGTTCCTCAAGGAGTTCCTCTGCAATCAGAAATCTCAGGAAATCTTTTCCAGAGCCTTTTGGAAAGCTATCATCTAAGCTTGAAACAGATTCATCTGAAAATGATAGCATTCATGATGAGTTGGAAGATCTGGAATTCATCTCACCTCCTGGATTGCTCCATACAGGGGTTCATGTAACATCTGAAAGTTTGGTGCCTGCTGATGGCATGTTGATGGAAAGGGGAAGCTGCAGTACGGACTCTAATAATAAATCTAAGAGAAACTTTATTCAAAGACATGAAGTGGTCAATCAAGATACTCATGCATCAATGAAGCCTAGAAGTCTTTGCCAGACATCAAACGGTGGTTCCGGTTGGTACAATTCGAGAAACCTCGCACGTGATTCAGTATCTGAAGTAGTTCCATCAGATAGTTCTTTGCTGGAGCCAAACCTTGCGAGAAGGAAGAATTTAACGAAGAAGATGCTATATGATGGTGAGAACAGTTCCACTTCTAGAGGAAAGAAGGCTAGTGGAACTTCCCGAGGACAAAAGTGTGTGTATCGGCATGGCATCTCTATTTCTGATCAAAGACCAGGTCGAAATGTGTTTCACGGACAAAATGTTCTTTCATCACATGGGACTCGAAGTTTGACAAGTGTATGTAGTGGGGCAAGGCATTCTTACCAAGGCATTAGTAACGATTTGTCATTACAGGATTTATTAGCGATGACTTCATTGATGCCTCAATCTAATGTCTCCAGTTCCTCAAATGCTTCTAGTTCACTTCAGTTATCTTCAGAATCACACTCCAGGCATCGCATGACCTACCCTGAACCAGAAGGCTATAGTCAAAGTCTACATCACAATGGACAAGCTACTCCTGCTGAAGTTGGTCTTTCAAGCACTTCAACAAATGTAAACAGCTTTAGATGCCACAATGTCGATGGAATTCCTGAGGTACTATTAGCGTTGGAGAGAATCGAACAGGAGGAGGAGCTAACTTACGAGCAGGCCATTCTTCTTGAGACGAGTATGTTCCTCAATAGCCTGAACATCTATGATCAGCACAGAGACATGAGACTTGACATTGATAACATGACATATGAGGTTAGCACTTATTCTTTGAAAGTAAAAATTCAGTTGGAATACTTCTGGCAATCTGCACTTATCATATATAATGGTTTTGCTGAATACTCCTCTGCAGTAGTCTTCACCTCTCTTCTCTCTTCTGTTTTTAAACAGCAACTTTTAGATTTAGAAGAGAGAATGGGGACAGTAAGCACAGCATTGTCTGAAGAAGCACTGACAGAATGCCTAAATAGAAGCATCTATCAGTCTAAACCTAAAGGTGAAACAGCCACGGGTTCTGTCGAGGATTTGAGCGATGTCAAATGCTGTATTTGTCAGGTTCCCTTTCTGACCCTTCCTTTACTACCATTCATTTGGTCGATTTTAACACCAGGAAGGCTGATTAGCGTCTAG 1692 41.78 MDGYSSKRVHVGIVSRKGPGLVLRDNMKHRDQSNQYGNRLGCTDRICSSSGAQVGCSNKSSSKKPFRSSSGKEVVGSSSRSSSAIRNLRKSFPEPFGKLSSKLETDSSENDSIHDELEDLEFISPPGLLHTGVHVTSESLVPADGMLMERGSCSTDSNNKSKRNFIQRHEVVNQDTHASMKPRSLCQTSNGGSGWYNSRNLARDSVSEVVPSDSSLLEPNLARRKNLTKKMLYDGENSSTSRGKKASGTSRGQKCVYRHGISISDQRPGRNVFHGQNVLSSHGTRSLTSVCSGARHSYQGISNDLSLQDLLAMTSLMPQSNVSSSSNASSSLQLSSESHSRHRMTYPEPEGYSQSLHHNGQATPAEVGLSSTSTNVNSFRCHNVDGIPEVLLALERIEQEEELTYEQAILLETSMFLNSLNIYDQHRDMRLDIDNMTYEVSTYSLKVKIQLEYFWQSALIIYNGFAEYSSAVVFTSLLSSVFKQQLLDLEERMGTVSTALSEEALTECLNRSIYQSKPKGETATGSVEDLSDVKCCICQVPFLTLPLLPFIWSILTPGRLISV 563
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28987328 28991038 - Lsi04G021950.1 Lsi04g02195 662244

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02195 563 MobiDBLite consensus disorder prediction 319 340 - -
Lsi04g02195 563 MobiDBLite consensus disorder prediction 50 88 - -
Lsi04g02195 563 MobiDBLite consensus disorder prediction 232 253 - -
Lsi04g02195 563 MobiDBLite consensus disorder prediction 352 369 - -
Lsi04g02195 563 MobiDBLite consensus disorder prediction 232 248 - -
Lsi04g02195 563 MobiDBLite consensus disorder prediction 50 89 - -
Lsi04g02195 563 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED 1 542 - -
Lsi04g02195 563 MobiDBLite consensus disorder prediction 319 369 - -
Lsi04g02195 563 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 542 IPR045191 GO:0061630
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02195 - - - cmax:111480963 714.146
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02195 Lsi-Chr4:28987328 Lsi08g01487 Lsi-Chr8:23031183 2.80E-11 dispersed
Lsi04g02195 Lsi-Chr4:28987328 Lsi08g01128 Lsi-Chr8:19925184 1.23E-103 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g200 Blo01g01341 . Bda01g00701 . . . . Bma01g02125 . Cmo12g00245 . Cma05g00629 Car09g00453 Car12g00277 Sed01g1303 Cpe07g00253 Cpe06g00391 Bhi04g01083 Tan02g2620 Cmetu03g2117 . Hepe10g0318 . Lcy13g1351 . . . . . . . . Cone7ag1763 . . Lsi04g02195 Csa03g04405 Chy04g00296 . Blo17g00044 . . Bda13g01298 . . Bma01g01312 Bma02g00056 . . Cmo09g00517 . Cma12g00293 Car01g01191 . . . Bhi09g02366 Tan01g3734 . . . . . . . . . . . . . . Chy03g01193 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000718 2 10 3 4 3 2 4 4 4 1 3 3 4 2 2 4 3 2 4 2 2 2 2 2 2 2 2 5 11 1 97
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02195 Lsi_Chr04 FPKM 34.620296 36.642448 51.580685 52.193954 35.503513 33.438667 39.772236 15.534615 15.965448 18.811852