Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02196 ATGCTACGGATCGCCTCATTCTCCACTGGTTCAACGACCGTATTTTCTTGTTCGCTTCCTTCTCGCACGGCCACCGCCCGGCGTAGGAGAAACTCTCTTCGGAGTCCTAATCTCAAGCGACTGACCTCTCGTGTTGTCAGACTCACCCGTCGCAAGCAACTCCACCAGGTATTTGAGGAAATTGCAATTGCCAAGAGACGTTATGGAAAGCTTAATACAATTGTTATGAACGCGGTCTTGGAAGCTTGTGTTCACTGCGGTGATATTGATTTAGCTCTGAGGACTTTTAATGAAATGTCAAAGCCAGATAATTGTGGTTTAGACAATGTCAGCTATGGCACGCTGTTAAAGGGTTTAGGTGAAGCTCGGAAGGTTGATGAAGCATTTCAATTACTTGAATCTGTGGAAGAAGGTACCGCTATTGGAGGTCCAACATTGTCAGCACCGCTTATTTATGGTCTTCTAAATGCTTTAATTGAAGCAGGAGACATGCGCCGTGCCAATGGTCTAATAGCACGATATGGGTTCTTACTTCGTGAAGGAGGCAATCTCTCTATATCAGTGTACAACTTATTGATGAAGGAACGAGCTGCTAAGTATGATCAAGAAGATATTTTTCCTGATGTTGTGACGTACACTACTTTACTTAAGGGTTTTGGGATTCTGAAAGATGTCCATCTTGTTCACAAGATTGTTCTGGAAATGAAATCTTGTCATGAATTGTTGATTGATCGAACAGCATACACTGCAATGATTGATGCTTTGGTTAACTGTGGCTCTATAAACGCTGCTCTTTCTTTATTTGGGGAATTATTGAAGCTTTCTGGATGCAATTTGGACTTACGGCCAAAGCCACATCTTTATCTCACACTTATGAGAGTTTTTTCTAGTAGAGGAGATTATAGGATGGTCAAATGTTTGCATAGACGCATGTGGCTGGACTCCTCTGGAACTATTTCTCCTGGATTTCAAGAAGAATCAGATCATCTTCTCATGGAGGCAGCTTTAAATGGCAATCAGATTGATGTGGCAATAGAGAAACTCTCAACAATTATTAAGAAATGGAAGGGAATCTCATGGGCTAGTCGAGGAGGCAGTGTTGCTCTGCGTATTGAAGCATTGCTGGGACTCACCAAATCTTTCTTTAGTCCTCCTTGCATATTTCCTCGGGTAAATCCAGGTGCATCTATTGAGAGTGTTATGATGCCATTTAAAGCCGTTCAGCCATTAAATGGAAGCTTACAGTTGAAGGAAGTGGTTATGCGTTTCTTTGACAAATCAGTTGTGCCTATCATAGACGACTGGGGTAGATGCAATGGACTACTGCACCGAGAAGACTGTACTGAGTTGGATGCCCCCCTTTGGAAAATGATGAGAAGCCCTCCTCCTAGCGTGACAACCACCACATCCATTGGACATGTTGCGAATCTAATTCTACAAAAGAGGTACAAAATGATTATTGTTGTAAGACATAACAAGTTTAGTACATATAATGGTTTGAGTTTGAGAGCTGTCGGTGTTTTTACTACCGAACAATTGTATGGCTTTATTTCTCCCATTCCGATGCAGCCTCAGCCGAGCATTCCACATAAGACGTAA 1599 42.34 MLRIASFSTGSTTVFSCSLPSRTATARRRRNSLRSPNLKRLTSRVVRLTRRKQLHQVFEEIAIAKRRYGKLNTIVMNAVLEACVHCGDIDLALRTFNEMSKPDNCGLDNVSYGTLLKGLGEARKVDEAFQLLESVEEGTAIGGPTLSAPLIYGLLNALIEAGDMRRANGLIARYGFLLREGGNLSISVYNLLMKERAAKYDQEDIFPDVVTYTTLLKGFGILKDVHLVHKIVLEMKSCHELLIDRTAYTAMIDALVNCGSINAALSLFGELLKLSGCNLDLRPKPHLYLTLMRVFSSRGDYRMVKCLHRRMWLDSSGTISPGFQEESDHLLMEAALNGNQIDVAIEKLSTIIKKWKGISWASRGGSVALRIEALLGLTKSFFSPPCIFPRVNPGASIESVMMPFKAVQPLNGSLQLKEVVMRFFDKSVVPIIDDWGRCNGLLHREDCTELDAPLWKMMRSPPPSVTTTTSIGHVANLILQKRYKMIIVVRHNKFSTYNGLSLRAVGVFTTEQLYGFISPIPMQPQPSIPHKT 532
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28993312 29004825 - Lsi04G021960.1 Lsi04g02196 662245

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02196 532 SUPERFAMILY CBS-domain pair 395 493 IPR046342 -
Lsi04g02196 532 Gene3D Tetratricopeptide repeat domain 35 201 IPR011990 GO:0005515
Lsi04g02196 532 TIGRFAM PPR: pentatricopeptide repeat domain 76 100 IPR002885 -
Lsi04g02196 532 TIGRFAM PPR: pentatricopeptide repeat domain 110 134 IPR002885 -
Lsi04g02196 532 TIGRFAM PPR: pentatricopeptide repeat domain 247 280 IPR002885 -
Lsi04g02196 532 Pfam PPR repeat 247 273 IPR002885 -
Lsi04g02196 532 PANTHER OS09G0431600 PROTEIN 16 196 IPR044781 -
Lsi04g02196 532 PANTHER OS09G0431600 PROTEIN 193 520 IPR044781 -
Lsi04g02196 532 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 108 138 IPR002885 -
Lsi04g02196 532 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Lsi04g02196 532 CDD CBS_pair_SF 416 513 - -
Lsi04g02196 532 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 244 279 IPR002885 -
Lsi04g02196 532 ProSiteProfiles CBS domain profile. 457 527 IPR000644 -
Lsi04g02196 532 Gene3D Tetratricopeptide repeat domain 202 338 IPR011990 GO:0005515
Lsi04g02196 532 Pfam Pentatricopeptide repeat domain 200 237 IPR002885 -
Lsi04g02196 532 Pfam PPR repeat family 72 119 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02196 - - - csv:101218517 860.136
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02196 Lsi-Chr4:28993312 Lsi10g01499 Lsi-Chr10:19189685 6.87E-07 dispersed
Lsi04g02196 Lsi-Chr4:28993312 Lsi03g02016 Lsi-Chr3:31559680 1.81E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g198 . . . . . . . . . . . . Car09g00456 . . . Cpe06g00392 . . . . . . . Cla05g01804 Cam05g1926 Cec05g1938 Cco05g2001 Clacu05g1918 Cmu05g1800 Cre05g1926 Cone4ag1857 Cone7ag1764 . . Lsi04g02196 Csa03g04406 . . . . . . . . . . Sed13g2091 . Cmo09g00518 . . . . . . Bhi09g02372 Tan01g3737 Cmetu04g2143 . Hepe01g2090 Mch11g0628 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013021 0 2 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02196 Lsi_Chr04 FPKM 1.289082 1.714707 2.030399 2.22791 3.975634 4.605088 4.399648 4.53693 4.300363 4.258968