Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02198 ATGGCGGTCGATCTGATGAGTTTTCCAAAGATGGATGATCAAATGGCTATACAGGAGGCTGCATCGCAAGGTTTGAAGAGTATGGAGCATTTGATTCGTCTTCTTTCTCATAAGCAATCTTCAAGCCATGTCGATTGCTCTGACCTAACTGATGCAACCGTTTCGAAGTTCAAGAAAGTAATCTCTCTCCTCAATCGGACCGGTCACGCCAGATTCCGGCGTGGTCCGGTTTCTTCGACATCCTCCTCGTCGTCCGGTTCATCTGCTCATCTCTCTCTTCCTCAAAATCAAGGGATGAATCTCACTCCTACTCCGTTTACTTCACCGGCTATGGTTCCTACTCCGCCGTTCACCGCTCCGCCTACCGTCGCTCAGCCACAGGCGAAAGTCGTCTCTACGGCGGCGAACTTCCTTCAGTCGCAGCCTCAGAGTATGACTCTCGATTTCACTAGGCCGAATATTTTGAACTCTAACCCTAAGGGAACCGATTTGGAATTTTCTAAGGAGACCTTCAGCGTCTCTTCCAGCTCCACCTCGTTTATGTCCTCTGCCATCACCGGAGACGGAAGCGTATCCAACGGAAAATTAGGAACGTCGATCTTTTTAGCACCAGCGCCGACTGCTTCTGGTGGTAAGCCGCCGCTCTCGGCGGCGCCCTACAAGAAGAGGTGCCACGAACACGATCATTCCGAAGATTTGTCCGGAAAATTCTCCGGATCAACATCTGCTTCCGGTAAATGCCATTGCTCAAAGAGAAGAACAGTAACCCTAAAATTTCTAACAAAGAACCTTGTGGATGGAGAACGAGTTGACTCGTCCGAGTTAAAAAATCGGATGAAGAAGACGATTCGAGTCCCGGCGATTAGTTCAAAAATCGCCGATATTCCACCGGACGAGTATTCGTGGAGGAAGTACGGTCAGAAGCCGATCAAAGGATCCCCATACCCACGGGGATATTACAAGTGTAGCACGATGAGAGGATGTCCGGCGAGGAAACACGTGGAGAGAGATCCGAACGATCCGGCGATGTTGATTGTAACGTATGAAGGGGAGCACCGCCATACGCAGAGCTCGTTGCCGGAACATATGGCGGGTGGAGTAGCTTTAGTTTTTGAGTCAACTTGA 1125 49.96 MAVDLMSFPKMDDQMAIQEAASQGLKSMEHLIRLLSHKQSSSHVDCSDLTDATVSKFKKVISLLNRTGHARFRRGPVSSTSSSSSGSSAHLSLPQNQGMNLTPTPFTSPAMVPTPPFTAPPTVAQPQAKVVSTAANFLQSQPQSMTLDFTRPNILNSNPKGTDLEFSKETFSVSSSSTSFMSSAITGDGSVSNGKLGTSIFLAPAPTASGGKPPLSAAPYKKRCHEHDHSEDLSGKFSGSTSASGKCHCSKRRTVTLKFLTKNLVDGERVDSSELKNRMKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERDPNDPAMLIVTYEGEHRHTQSSLPEHMAGGVALVFEST 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29020887 29024129 - Lsi04G021980.1 Lsi04g02198 662247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02198 374 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 275 373 IPR044810 GO:0003700
Lsi04g02198 374 SMART WRKY_cls 296 356 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi04g02198 374 Pfam WRKY DNA -binding domain 298 354 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi04g02198 374 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 7 258 IPR044810 GO:0003700
Lsi04g02198 374 SUPERFAMILY WRKY DNA-binding domain 294 356 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi04g02198 374 MobiDBLite consensus disorder prediction 72 121 - -
Lsi04g02198 374 MobiDBLite consensus disorder prediction 74 107 - -
Lsi04g02198 374 ProSiteProfiles WRKY domain profile. 291 357 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi04g02198 374 PANTHER WRKY TRANSCRIPTION FACTOR 17-RELATED 275 373 - -
Lsi04g02198 374 Gene3D WRKY domain 284 357 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi04g02198 374 PANTHER WRKY TRANSCRIPTION FACTOR 17-RELATED 7 258 - -
Lsi04g02198 374 Pfam Plant zinc cluster domain 221 254 IPR018872 -
Lsi04g02198 374 Pfam Plant zinc cluster domain 276 294 IPR018872 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02198 Lsi-Chr4:29020887 Lsi05g00976 Lsi-Chr5:17003245 3.72E-53 dispersed
Lsi04g02198 Lsi-Chr4:29020887 Lsi04g01528 Lsi-Chr4:22895393 8.76E-71 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25256 PF03106 WRKY 7.40E-26 CL0274 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02198 - - bhj:120087087 600.897