Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02203 ATGGAACTGAAGAAAGCCAAATTCGTCAGGTTTTACTCCAATGAGAAGAAGAATATTGAGCTTCCATGGGAGAAAAACGATGGGAAGAAGAGGAACGTTGAGTTCCCATTACCAGTTTTCAAAATGGGGAAGAAATTAGAGAATGAAAGTAAAATTATGAACTCAGATTCTTCAGGGAGGTCGAAGGTTTTTGTGGAGAGTAATGGGCCACAAGAAGAGAAGAATAAGAGGATTCTTAATCCAGAAAGTGAAAGGATTCTGAGATGGAATAGGGTTTTTCTCTTCTCTTGTTTGACAGCTCTTTTCGTTGACCCATTGTTCTTCTACCTTCCTTCAGTGATTCATCATAACAGGTCATCTTGTATGACTACTGATTTCAATTTGGGAATTGTTGTGACTGTTTTTCGTACTTTTGCCGATGTTTTCTATCTGTTGCATATGATTTTGAAGTTCCGGATTGCTTATGTATCACCAACTTCAAGAGTTTTTGGTAAAGCAATTAGAAGCTCTCATGCAGACCATACAAACAATACTCTTGTGTTAATTGTCCTGCTTCAATATATTCCAAGATTTTACCTGATTTTCCCATTAAGTTCCCACATTATCAAAACTACTGGTGTTGTCACAAAGACTGCTTGGGCTGGGGCTGCATATAACCTTGTATTGTACATGCTAGCTAGTCATATCTTAGGAGCAGCGTGGTATTTACTATCCGTGGAGCGCCATGCCATGTGCTGGAAGTTCGCCTGCAGGAACGAATTCAGTCCTATGAAATGTTTTCTTGACTATCTGGATTGTGGTACTTTAAATCATGTAGACCGCAGGATATGGGAAGTGAATACTACTGTATTTAGCCAATGTTCTCCAGATGAAGATGTCATTTTCAATTACGGGATATTTGCGAATGCGATCGCGAAAGATGTCATCTCCTCCAGGTTCCTTCAGAAGTATTTCTATTGTTTATGGTGGGGCTTACAGAACTTGAGGTATGAATACATTTGTGATTCCTATGGTCAGGGTTTGGAGACAAGCATCTACATGGGAGAGACTTTATTTGCTATCCTCATTGCTATAATGGGTTTGGTCTTGTTTGCACATTTGATCGGAAATATGCAGACCTATTTGCAATCCATCACTGTGAGACTGGAGGAATGGAGGGTCAAGCGTCGAGACACTGAAGAATGGATGAAACATCGACAGCTCCCTCGAGATTTACAAGAACGTGTGAGGAGATTTGTTCAATATAAGTGGCTTGCAACACGAGGAGTCGACGAAGAGTCGATTCTACAAGGTCTTCCAACAGATCTCCGTCGAGATATTCAGCGCCACTTGTGTCTCGACCTTGTTCGACGTGTTCCTTTTTTCGCTCAAATGGATGATCAACTACTCGATGCAATTTGCGAGCGACTGGCTTCCTCTCTATGTACGCAACGTACTTACATTGTTCGTGAAGGAGATCCTGTTACTGAGATGCTCTTTATCATCCGAGGGATGCTCGAGAGTTCCACAACGGATGGAGGACGGTCAGGTTTTTTCAATTCGATAACCTTAAGACCTGGCGATTTTTGTGGCGAAGAGCTTCTGGCTTGGGCATTGCTACCAAAATCATCAATCAGCTTGCCATCTTCTACCAGAACAGTTCGAGCAATCACTGAAGTGGAAGCCTTTGCTCTACGTGCTGAGGATCTCAAATTCGTCGCTAACCAGTTTCGACGTCTTCATAGCAAGAAGCTTCAGCACACCTTCCGGTTTTATTCATATCACTGGAGAACCTGGGCAGCCTGCTTCATTCAGGCAGCATGGCGTCGCTTCAAAAGGCGAATCATAGCAAAGTCACTCAGCTTGCAGGAGTCTTTCTCGATGACTCCCGAGAAGCCTGTGGCCGAGGAAACCGAACAAGAAGAAGAAGAACATAACACTCCACGCTCCAATTACTCTCAAGCAAAACAAAACCTTGGTGTCACCATATTGGCTTCAAGGTTTGCTGCAAACACACGTAGAGGAGCACAAAAGCTTAAAGATATCAACTTATCCAAGCTGCGAAAGCCTGATGAGCCAGACTTTTCTGAAGAACCAGACGATTAA 2085 42.73 MELKKAKFVRFYSNEKKNIELPWEKNDGKKRNVEFPLPVFKMGKKLENESKIMNSDSSGRSKVFVESNGPQEEKNKRILNPESERILRWNRVFLFSCLTALFVDPLFFYLPSVIHHNRSSCMTTDFNLGIVVTVFRTFADVFYLLHMILKFRIAYVSPTSRVFGKAIRSSHADHTNNTLVLIVLLQYIPRFYLIFPLSSHIIKTTGVVTKTAWAGAAYNLVLYMLASHILGAAWYLLSVERHAMCWKFACRNEFSPMKCFLDYLDCGTLNHVDRRIWEVNTTVFSQCSPDEDVIFNYGIFANAIAKDVISSRFLQKYFYCLWWGLQNLRYEYICDSYGQGLETSIYMGETLFAILIAIMGLVLFAHLIGNMQTYLQSITVRLEEWRVKRRDTEEWMKHRQLPRDLQERVRRFVQYKWLATRGVDEESILQGLPTDLRRDIQRHLCLDLVRRVPFFAQMDDQLLDAICERLASSLCTQRTYIVREGDPVTEMLFIIRGMLESSTTDGGRSGFFNSITLRPGDFCGEELLAWALLPKSSISLPSSTRTVRAITEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSYHWRTWAACFIQAAWRRFKRRIIAKSLSLQESFSMTPEKPVAEETEQEEEEHNTPRSNYSQAKQNLGVTILASRFAANTRRGAQKLKDINLSKLRKPDEPDFSEEPDD 694
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29068095 29072858 + Lsi04G022030.1 Lsi04g02203 662252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02203 694 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 166 691 - -
Lsi04g02203 694 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 14-RELATED 166 691 - -
Lsi04g02203 694 MobiDBLite consensus disorder prediction 674 694 - -
Lsi04g02203 694 ProSiteProfiles cAMP/cGMP binding motif profile. 454 584 IPR000595 -
Lsi04g02203 694 Gene3D Helix hairpin bin 382 445 - -
Lsi04g02203 694 MobiDBLite consensus disorder prediction 621 648 - -
Lsi04g02203 694 Gene3D Jelly Rolls 452 572 IPR014710 -
Lsi04g02203 694 SMART cnmp_10 454 585 IPR000595 -
Lsi04g02203 694 Pfam Ion transport protein 89 381 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lsi04g02203 694 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 43 165 - -
Lsi04g02203 694 Pfam Cyclic nucleotide-binding domain 478 565 IPR000595 -
Lsi04g02203 694 CDD CAP_ED 454 585 IPR000595 -
Lsi04g02203 694 SUPERFAMILY cAMP-binding domain-like 384 576 IPR018490 -
Lsi04g02203 694 SUPERFAMILY Voltage-gated potassium channels 85 376 - -
Lsi04g02203 694 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 14-RELATED 43 165 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02203 Lsi-Chr4:29068095 Lsi11g00684 Lsi-Chr11:7207436 0 dispersed
Lsi04g02203 Lsi-Chr4:29068095 Lsi03g01408 Lsi-Chr3:25030619 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02203 K05391 - csv:101211072 1182.93