Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi04g02203 | ATGGAACTGAAGAAAGCCAAATTCGTCAGGTTTTACTCCAATGAGAAGAAGAATATTGAGCTTCCATGGGAGAAAAACGATGGGAAGAAGAGGAACGTTGAGTTCCCATTACCAGTTTTCAAAATGGGGAAGAAATTAGAGAATGAAAGTAAAATTATGAACTCAGATTCTTCAGGGAGGTCGAAGGTTTTTGTGGAGAGTAATGGGCCACAAGAAGAGAAGAATAAGAGGATTCTTAATCCAGAAAGTGAAAGGATTCTGAGATGGAATAGGGTTTTTCTCTTCTCTTGTTTGACAGCTCTTTTCGTTGACCCATTGTTCTTCTACCTTCCTTCAGTGATTCATCATAACAGGTCATCTTGTATGACTACTGATTTCAATTTGGGAATTGTTGTGACTGTTTTTCGTACTTTTGCCGATGTTTTCTATCTGTTGCATATGATTTTGAAGTTCCGGATTGCTTATGTATCACCAACTTCAAGAGTTTTTGGTAAAGCAATTAGAAGCTCTCATGCAGACCATACAAACAATACTCTTGTGTTAATTGTCCTGCTTCAATATATTCCAAGATTTTACCTGATTTTCCCATTAAGTTCCCACATTATCAAAACTACTGGTGTTGTCACAAAGACTGCTTGGGCTGGGGCTGCATATAACCTTGTATTGTACATGCTAGCTAGTCATATCTTAGGAGCAGCGTGGTATTTACTATCCGTGGAGCGCCATGCCATGTGCTGGAAGTTCGCCTGCAGGAACGAATTCAGTCCTATGAAATGTTTTCTTGACTATCTGGATTGTGGTACTTTAAATCATGTAGACCGCAGGATATGGGAAGTGAATACTACTGTATTTAGCCAATGTTCTCCAGATGAAGATGTCATTTTCAATTACGGGATATTTGCGAATGCGATCGCGAAAGATGTCATCTCCTCCAGGTTCCTTCAGAAGTATTTCTATTGTTTATGGTGGGGCTTACAGAACTTGAGGTATGAATACATTTGTGATTCCTATGGTCAGGGTTTGGAGACAAGCATCTACATGGGAGAGACTTTATTTGCTATCCTCATTGCTATAATGGGTTTGGTCTTGTTTGCACATTTGATCGGAAATATGCAGACCTATTTGCAATCCATCACTGTGAGACTGGAGGAATGGAGGGTCAAGCGTCGAGACACTGAAGAATGGATGAAACATCGACAGCTCCCTCGAGATTTACAAGAACGTGTGAGGAGATTTGTTCAATATAAGTGGCTTGCAACACGAGGAGTCGACGAAGAGTCGATTCTACAAGGTCTTCCAACAGATCTCCGTCGAGATATTCAGCGCCACTTGTGTCTCGACCTTGTTCGACGTGTTCCTTTTTTCGCTCAAATGGATGATCAACTACTCGATGCAATTTGCGAGCGACTGGCTTCCTCTCTATGTACGCAACGTACTTACATTGTTCGTGAAGGAGATCCTGTTACTGAGATGCTCTTTATCATCCGAGGGATGCTCGAGAGTTCCACAACGGATGGAGGACGGTCAGGTTTTTTCAATTCGATAACCTTAAGACCTGGCGATTTTTGTGGCGAAGAGCTTCTGGCTTGGGCATTGCTACCAAAATCATCAATCAGCTTGCCATCTTCTACCAGAACAGTTCGAGCAATCACTGAAGTGGAAGCCTTTGCTCTACGTGCTGAGGATCTCAAATTCGTCGCTAACCAGTTTCGACGTCTTCATAGCAAGAAGCTTCAGCACACCTTCCGGTTTTATTCATATCACTGGAGAACCTGGGCAGCCTGCTTCATTCAGGCAGCATGGCGTCGCTTCAAAAGGCGAATCATAGCAAAGTCACTCAGCTTGCAGGAGTCTTTCTCGATGACTCCCGAGAAGCCTGTGGCCGAGGAAACCGAACAAGAAGAAGAAGAACATAACACTCCACGCTCCAATTACTCTCAAGCAAAACAAAACCTTGGTGTCACCATATTGGCTTCAAGGTTTGCTGCAAACACACGTAGAGGAGCACAAAAGCTTAAAGATATCAACTTATCCAAGCTGCGAAAGCCTGATGAGCCAGACTTTTCTGAAGAACCAGACGATTAA | 2085 | 42.73 | MELKKAKFVRFYSNEKKNIELPWEKNDGKKRNVEFPLPVFKMGKKLENESKIMNSDSSGRSKVFVESNGPQEEKNKRILNPESERILRWNRVFLFSCLTALFVDPLFFYLPSVIHHNRSSCMTTDFNLGIVVTVFRTFADVFYLLHMILKFRIAYVSPTSRVFGKAIRSSHADHTNNTLVLIVLLQYIPRFYLIFPLSSHIIKTTGVVTKTAWAGAAYNLVLYMLASHILGAAWYLLSVERHAMCWKFACRNEFSPMKCFLDYLDCGTLNHVDRRIWEVNTTVFSQCSPDEDVIFNYGIFANAIAKDVISSRFLQKYFYCLWWGLQNLRYEYICDSYGQGLETSIYMGETLFAILIAIMGLVLFAHLIGNMQTYLQSITVRLEEWRVKRRDTEEWMKHRQLPRDLQERVRRFVQYKWLATRGVDEESILQGLPTDLRRDIQRHLCLDLVRRVPFFAQMDDQLLDAICERLASSLCTQRTYIVREGDPVTEMLFIIRGMLESSTTDGGRSGFFNSITLRPGDFCGEELLAWALLPKSSISLPSSTRTVRAITEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSYHWRTWAACFIQAAWRRFKRRIIAKSLSLQESFSMTPEKPVAEETEQEEEEHNTPRSNYSQAKQNLGVTILASRFAANTRRGAQKLKDINLSKLRKPDEPDFSEEPDD | 694 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 29068095 | 29072858 | + | Lsi04G022030.1 | Lsi04g02203 | 662252 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi04g02203 | 694 | PANTHER | CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED | 166 | 691 | - | - | |
Lsi04g02203 | 694 | PANTHER | CYCLIC NUCLEOTIDE-GATED ION CHANNEL 14-RELATED | 166 | 691 | - | - | |
Lsi04g02203 | 694 | MobiDBLite | consensus disorder prediction | 674 | 694 | - | - | |
Lsi04g02203 | 694 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 454 | 584 | IPR000595 | - | |
Lsi04g02203 | 694 | Gene3D | Helix hairpin bin | 382 | 445 | - | - | |
Lsi04g02203 | 694 | MobiDBLite | consensus disorder prediction | 621 | 648 | - | - | |
Lsi04g02203 | 694 | Gene3D | Jelly Rolls | 452 | 572 | IPR014710 | - | |
Lsi04g02203 | 694 | SMART | cnmp_10 | 454 | 585 | IPR000595 | - | |
Lsi04g02203 | 694 | Pfam | Ion transport protein | 89 | 381 | IPR005821 | GO:0005216|GO:0006811|GO:0016020|GO:0055085 | |
Lsi04g02203 | 694 | PANTHER | CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED | 43 | 165 | - | - | |
Lsi04g02203 | 694 | Pfam | Cyclic nucleotide-binding domain | 478 | 565 | IPR000595 | - | |
Lsi04g02203 | 694 | CDD | CAP_ED | 454 | 585 | IPR000595 | - | |
Lsi04g02203 | 694 | SUPERFAMILY | cAMP-binding domain-like | 384 | 576 | IPR018490 | - | |
Lsi04g02203 | 694 | SUPERFAMILY | Voltage-gated potassium channels | 85 | 376 | - | - | |
Lsi04g02203 | 694 | PANTHER | CYCLIC NUCLEOTIDE-GATED ION CHANNEL 14-RELATED | 43 | 165 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi04g02203 | Lsi-Chr4:29068095 | Lsi11g00684 | Lsi-Chr11:7207436 | 0 | dispersed | |
Lsi04g02203 | Lsi-Chr4:29068095 | Lsi03g01408 | Lsi-Chr3:25030619 | 0 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi04g02203 | K05391 | - | csv:101211072 | 1182.93 |