Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02204 ATGGCGCCGAGATTGGGGTTTTTGTGTCGGTGGGGTAAAGAGAAAGACACTCAAAAGGGTACTCCGGTGGTTGTGACGATGGAGAAACCTAATTTCTCCGTCGTGGAGATCGACGGTCCCGACGCTGCATTCCGGCCGGTGGAGAAAAGTAGAGGCAAAAATGCTAAACAGGTCACGTGGGTTCTTCTTCTAAAGGCCAATCGAGCCGTCGGTTGCATAACTTGGCTTGTTACTGTTCTCTGGGCATTGTTGGGAACAATCAAGAAGAGGCTGATCTACAGACAGGGAGTCGCCATTGAAGGCGGGAAGTTGGGAAGAGGGAAGTTATTGTTTGGAGTTATTAGAGTTTTCTTAGTAACTTCCATTGCGATTCTTGCTTTTGAAATGCTTGCTTATTTCAAAGGCTGGCATTATTTTCAGAATTCCAATCTGCATATTCCTCAAGCTTCTGAGTTGCAAGGATTGCTTCATTCACTCTATGTTGCTTGGTTAACTTTTAGAGCAGAATACATTGCTCCTCTCATTCAAACACTCTCTAAATTTTGCATTGTTCTGTTCCTTATCCAATCTGTGGATCGTATGATCCTTTGTTTTGGTTGCCTGTGGATAAAGTTCAAAAGAATTGAACCCAAAATTGAAGGGGATCCCTTCAAGTTGGATGATGAGGAGGGAGCTGGGCACAAGTATCCAATGGTTCTTGTTCAAATTCCCATGTGCAATGAGCGGGAGGTTTATGAGCAGTCTATCTCTGCAGTCTGTCAGATTGATTGGCCAAGGGACCATTTACTAATTCAAGTTCTTGACGATTCTAATGATGAGAGCATCCAACTGTTAATTAAGGCAGAGGTTGCTAAATGGAACCAAAAGGGGGTAAACATAGTGTATCGCCATCGATTAGTAAGAACAGGATATAAAGCTGGGAATCTCAAGTCTGCAATGAGTTGTGATTATGTTAGAGACTACGAGTTTGTAGCAATTTTTGATGCTGACTTTCAACCTAATCCAGATTTTCTTAAATTGACCGTCCCCCATTTCAAGGATAACCCAGAGCTAGGTTTGGTTCAGGCCAGATGGTCTTTCGTGAACCGGGATGAAAACTTGTTGACACGCCTTCAAAATATTAACTTGTGTTTCCACTTTGAGGTAGAACAGCAGGTCAATGGAGTGTTCCTTAATTTCTTTGGTTTCAATGGCACTGCTGGGGTTTGGAGGATTAAAGCCCTGGAGGAGTCTGGAGGGTGGCTTGAAAGAACCACAGTAGAGGATATGGACATAGCTGTGAGAGCCCATCTTAACGGCTGGAAATTCGTATTTCTAAACGACGTTAAGGTCCTTTGTGAAGTTCCCGAGTCCTATGAAGCTTATAGGAAGCAGCAACATCGTTGGCATTCTGGTCCTATGCAACTATTCAGGTTGTGTCTTCCAGCAGTCATAAGTTCTAAGATATCAACATGGAAGAAGGCAAATTTGATACTGTTGTTCTTTCTATTAAGGAAGCTTATCCTTCCATTCTATTCCTTCACTTTGTTCTGCATAATTCTTCCTCTAACCATGTTCGTACCAGAAGCCGAGCTTCCCATATGGGTGATCTGTTATGTGCCTGTCTTCATGTCATTACTCAACATTCTTCCATCCCCAAAATCTTTTCCTTTTATTGTCCCTTACCTTCTTTTTGAGAACACTATGTCTGTCACCAAATTCAATGCCATGGTATCTGGCTTATTCCAGTTAGGTAGCTCTTATGAGTGGATTGTGACTAAAAAGGCTGGCAGGTCCTCCGAATCCGACTTACTGGCTGCTGCTGAAAGAGACTCTAAGACAATGAATCAAGTGCAGATCTATAGAGGTGCTTCCGAGAGTGAGATTTCTGAGTTGGCTCACTTAAAGGAACGCAAAGAAGTTGTCTCTGCACCTGTCAAAAAAGTTAACAAGATATATCGGAAAGAGCTAGCGCTCGCGTTTCTTTTACTGTTAGCCTCACTCAGGAGTCTCTTGGCTGCACAAGGAGTCCACTTCTACTTCTTGATGTTCCAAGGTGTGACCTTCCTCCTTGTAGGCCTTGATCTAATTGGAGAGCAAATGAGCTGA 2088 43.15 MAPRLGFLCRWGKEKDTQKGTPVVVTMEKPNFSVVEIDGPDAAFRPVEKSRGKNAKQVTWVLLLKANRAVGCITWLVTVLWALLGTIKKRLIYRQGVAIEGGKLGRGKLLFGVIRVFLVTSIAILAFEMLAYFKGWHYFQNSNLHIPQASELQGLLHSLYVAWLTFRAEYIAPLIQTLSKFCIVLFLIQSVDRMILCFGCLWIKFKRIEPKIEGDPFKLDDEEGAGHKYPMVLVQIPMCNEREVYEQSISAVCQIDWPRDHLLIQVLDDSNDESIQLLIKAEVAKWNQKGVNIVYRHRLVRTGYKAGNLKSAMSCDYVRDYEFVAIFDADFQPNPDFLKLTVPHFKDNPELGLVQARWSFVNRDENLLTRLQNINLCFHFEVEQQVNGVFLNFFGFNGTAGVWRIKALEESGGWLERTTVEDMDIAVRAHLNGWKFVFLNDVKVLCEVPESYEAYRKQQHRWHSGPMQLFRLCLPAVISSKISTWKKANLILLFFLLRKLILPFYSFTLFCIILPLTMFVPEAELPIWVICYVPVFMSLLNILPSPKSFPFIVPYLLFENTMSVTKFNAMVSGLFQLGSSYEWIVTKKAGRSSESDLLAAAERDSKTMNQVQIYRGASESEISELAHLKERKEVVSAPVKKVNKIYRKELALAFLLLLASLRSLLAAQGVHFYFLMFQGVTFLLVGLDLIGEQMS 695
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29073775 29078045 - Lsi04G022040.1 Lsi04g02204 662253

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02204 695 Pfam Glycosyl transferase family group 2 324 530 IPR001173 -
Lsi04g02204 695 SUPERFAMILY Nucleotide-diphospho-sugar transferases 229 530 IPR029044 -
Lsi04g02204 695 PANTHER XYLOGLUCAN GLYCOSYLTRANSFERASE 5-RELATED 13 695 - -
Lsi04g02204 695 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 221 449 IPR029044 -
Lsi04g02204 695 PANTHER - 13 695 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02204 - - - csv:101217415 1332.78
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01542 Lsi-Chr2:21280256 Lsi04g02204 Lsi-Chr4:29073775 0 dispersed
Lsi02g02134 Lsi-Chr2:27661481 Lsi04g02204 Lsi-Chr4:29073775 0 dispersed
Lsi03g01945 Lsi-Chr3:30859356 Lsi04g02204 Lsi-Chr4:29073775 2.54E-139 dispersed
Lsi04g02204 Lsi-Chr4:29073775 Lsi08g01551 Lsi-Chr8:23560648 0 dispersed
Lsi04g02204 Lsi-Chr4:29073775 Lsi04g01454 Lsi-Chr4:22296233 0 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi10g00322 . 220 382 REM Transcription Factor Family AT1G49480 70.6 6.5e-57 217.6
Lsi04g02204 . 1 695 REM Transcription Factor Family AT2G24630 77.6 0.0e+00 1093.6
Lsi02g01542 . 6 666 REM Transcription Factor Family AT2G24630 69.5 3.6e-268 921.0
Lsi08g01551 CCT 5 698 REM Transcription Factor Family AT2G24630 65.8 2.9e-257 884.8
Lsi04g01454 CCT 1 752 REM Transcription Factor Family AT2G24630 59.8 1.9e-253 872.1
Lsi02g02134 . 5 694 REM Transcription Factor Family AT2G24630 61.7 3.9e-246 847.8
Lsi04g02204 . 1 695 REM Transcription Factor Family AT2G24630 77.6 0.0e+00 1093.6
Lsi02g01542 . 6 666 REM Transcription Factor Family AT2G24630 69.5 3.6e-268 921.0
Lsi08g01551 CCT 5 698 REM Transcription Factor Family AT2G24630 65.8 2.9e-257 884.8
Lsi04g01454 CCT 1 752 REM Transcription Factor Family AT2G24630 59.8 1.9e-253 872.1
Lsi02g02134 . 5 694 REM Transcription Factor Family AT2G24630 61.7 3.9e-246 847.8
Lsi04g02204 . 1 695 REM Transcription Factor Family AT2G24630 77.6 0.0e+00 1093.6
Lsi02g01542 . 6 666 REM Transcription Factor Family AT2G24630 69.5 3.6e-268 921.0
Lsi08g01551 CCT 5 698 REM Transcription Factor Family AT2G24630 65.8 2.9e-257 884.8
Lsi04g01454 CCT 1 752 REM Transcription Factor Family AT2G24630 59.8 1.9e-253 872.1
Lsi02g02134 . 5 694 REM Transcription Factor Family AT2G24630 61.7 3.9e-246 847.8
Lsi10g00322 . 220 382 REM Transcription Factor Family AT1G49480 70.6 6.5e-57 217.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006307 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02204 Lsi_Chr04 FPKM 47.928368 50.209152 183.439651 177.229248 39.360176 42.324032 43.226303 88.63224 85.299141 96.005989