Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02204 ATGGCGCCGAGATTGGGGTTTTTGTGTCGGTGGGGTAAAGAGAAAGACACTCAAAAGGGTACTCCGGTGGTTGTGACGATGGAGAAACCTAATTTCTCCGTCGTGGAGATCGACGGTCCCGACGCTGCATTCCGGCCGGTGGAGAAAAGTAGAGGCAAAAATGCTAAACAGGTCACGTGGGTTCTTCTTCTAAAGGCCAATCGAGCCGTCGGTTGCATAACTTGGCTTGTTACTGTTCTCTGGGCATTGTTGGGAACAATCAAGAAGAGGCTGATCTACAGACAGGGAGTCGCCATTGAAGGCGGGAAGTTGGGAAGAGGGAAGTTATTGTTTGGAGTTATTAGAGTTTTCTTAGTAACTTCCATTGCGATTCTTGCTTTTGAAATGCTTGCTTATTTCAAAGGCTGGCATTATTTTCAGAATTCCAATCTGCATATTCCTCAAGCTTCTGAGTTGCAAGGATTGCTTCATTCACTCTATGTTGCTTGGTTAACTTTTAGAGCAGAATACATTGCTCCTCTCATTCAAACACTCTCTAAATTTTGCATTGTTCTGTTCCTTATCCAATCTGTGGATCGTATGATCCTTTGTTTTGGTTGCCTGTGGATAAAGTTCAAAAGAATTGAACCCAAAATTGAAGGGGATCCCTTCAAGTTGGATGATGAGGAGGGAGCTGGGCACAAGTATCCAATGGTTCTTGTTCAAATTCCCATGTGCAATGAGCGGGAGGTTTATGAGCAGTCTATCTCTGCAGTCTGTCAGATTGATTGGCCAAGGGACCATTTACTAATTCAAGTTCTTGACGATTCTAATGATGAGAGCATCCAACTGTTAATTAAGGCAGAGGTTGCTAAATGGAACCAAAAGGGGGTAAACATAGTGTATCGCCATCGATTAGTAAGAACAGGATATAAAGCTGGGAATCTCAAGTCTGCAATGAGTTGTGATTATGTTAGAGACTACGAGTTTGTAGCAATTTTTGATGCTGACTTTCAACCTAATCCAGATTTTCTTAAATTGACCGTCCCCCATTTCAAGGATAACCCAGAGCTAGGTTTGGTTCAGGCCAGATGGTCTTTCGTGAACCGGGATGAAAACTTGTTGACACGCCTTCAAAATATTAACTTGTGTTTCCACTTTGAGGTAGAACAGCAGGTCAATGGAGTGTTCCTTAATTTCTTTGGTTTCAATGGCACTGCTGGGGTTTGGAGGATTAAAGCCCTGGAGGAGTCTGGAGGGTGGCTTGAAAGAACCACAGTAGAGGATATGGACATAGCTGTGAGAGCCCATCTTAACGGCTGGAAATTCGTATTTCTAAACGACGTTAAGGTCCTTTGTGAAGTTCCCGAGTCCTATGAAGCTTATAGGAAGCAGCAACATCGTTGGCATTCTGGTCCTATGCAACTATTCAGGTTGTGTCTTCCAGCAGTCATAAGTTCTAAGATATCAACATGGAAGAAGGCAAATTTGATACTGTTGTTCTTTCTATTAAGGAAGCTTATCCTTCCATTCTATTCCTTCACTTTGTTCTGCATAATTCTTCCTCTAACCATGTTCGTACCAGAAGCCGAGCTTCCCATATGGGTGATCTGTTATGTGCCTGTCTTCATGTCATTACTCAACATTCTTCCATCCCCAAAATCTTTTCCTTTTATTGTCCCTTACCTTCTTTTTGAGAACACTATGTCTGTCACCAAATTCAATGCCATGGTATCTGGCTTATTCCAGTTAGGTAGCTCTTATGAGTGGATTGTGACTAAAAAGGCTGGCAGGTCCTCCGAATCCGACTTACTGGCTGCTGCTGAAAGAGACTCTAAGACAATGAATCAAGTGCAGATCTATAGAGGTGCTTCCGAGAGTGAGATTTCTGAGTTGGCTCACTTAAAGGAACGCAAAGAAGTTGTCTCTGCACCTGTCAAAAAAGTTAACAAGATATATCGGAAAGAGCTAGCGCTCGCGTTTCTTTTACTGTTAGCCTCACTCAGGAGTCTCTTGGCTGCACAAGGAGTCCACTTCTACTTCTTGATGTTCCAAGGTGTGACCTTCCTCCTTGTAGGCCTTGATCTAATTGGAGAGCAAATGAGCTGA 2088 43.15 MAPRLGFLCRWGKEKDTQKGTPVVVTMEKPNFSVVEIDGPDAAFRPVEKSRGKNAKQVTWVLLLKANRAVGCITWLVTVLWALLGTIKKRLIYRQGVAIEGGKLGRGKLLFGVIRVFLVTSIAILAFEMLAYFKGWHYFQNSNLHIPQASELQGLLHSLYVAWLTFRAEYIAPLIQTLSKFCIVLFLIQSVDRMILCFGCLWIKFKRIEPKIEGDPFKLDDEEGAGHKYPMVLVQIPMCNEREVYEQSISAVCQIDWPRDHLLIQVLDDSNDESIQLLIKAEVAKWNQKGVNIVYRHRLVRTGYKAGNLKSAMSCDYVRDYEFVAIFDADFQPNPDFLKLTVPHFKDNPELGLVQARWSFVNRDENLLTRLQNINLCFHFEVEQQVNGVFLNFFGFNGTAGVWRIKALEESGGWLERTTVEDMDIAVRAHLNGWKFVFLNDVKVLCEVPESYEAYRKQQHRWHSGPMQLFRLCLPAVISSKISTWKKANLILLFFLLRKLILPFYSFTLFCIILPLTMFVPEAELPIWVICYVPVFMSLLNILPSPKSFPFIVPYLLFENTMSVTKFNAMVSGLFQLGSSYEWIVTKKAGRSSESDLLAAAERDSKTMNQVQIYRGASESEISELAHLKERKEVVSAPVKKVNKIYRKELALAFLLLLASLRSLLAAQGVHFYFLMFQGVTFLLVGLDLIGEQMS 695
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29073775 29078045 - Lsi04G022040.1 Lsi04g02204 662253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02204 695 Pfam Glycosyl transferase family group 2 324 530 IPR001173 -
Lsi04g02204 695 SUPERFAMILY Nucleotide-diphospho-sugar transferases 229 530 IPR029044 -
Lsi04g02204 695 PANTHER XYLOGLUCAN GLYCOSYLTRANSFERASE 5-RELATED 13 695 - -
Lsi04g02204 695 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 221 449 IPR029044 -
Lsi04g02204 695 PANTHER - 13 695 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01542 Lsi-Chr2:21280256 Lsi04g02204 Lsi-Chr4:29073775 0 dispersed
Lsi02g02134 Lsi-Chr2:27661481 Lsi04g02204 Lsi-Chr4:29073775 0 dispersed
Lsi03g01945 Lsi-Chr3:30859356 Lsi04g02204 Lsi-Chr4:29073775 2.54E-139 dispersed
Lsi04g02204 Lsi-Chr4:29073775 Lsi08g01551 Lsi-Chr8:23560648 0 dispersed
Lsi04g02204 Lsi-Chr4:29073775 Lsi04g01454 Lsi-Chr4:22296233 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02204 - - csv:101217415 1332.78