Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02207 ATGTGGTTACCAAGATACAGTTTAGAAAGAAAGGAGAGATTGAATGTGAATGGATTTGTGGCAGTGGCAATTGATAAAGACAAAGGAAGCCAAGGAGCTCTTAAATGGACAATTGATCATTTGCTTCAAAGAGGACAAACTGTTTTCCTCATTCATGTCAAACTCAGATCTCCTTCTAATTCTTCCCAAAATGTAGCAAAGGCCATAATTGAGTATGCCGCAAATACAGCCATAGAGAACATTGTTGTGGGTGCTTCAGCAAAATCTGGCTTCTTAAGATTCAAGGCAACTGATGTTCCTGGCAGTGTAGTAAAAGGAGCACCAGATTTTTGTAATGTATTTGTCATTTCTAAAAGCAAAATCCAATCGATGCGCTCGGCATCTCGTCCTGCTCCACCAGTAAGTGCTCTACGAGGTCAATTAGCGCAACAAATCAGCGCAAAATCCGATATGCCCGACTTCCCTGTCTCTCACTCTGCAAGTGCAAGAGTGTCTTTGGATAAGCCACCCCTTGATCTGCCTAGTAAATCGCAAGACGAGGACGATTTCATGAGTCAAGATATGGGAGGAAGAGCCACACCACCACAAATTTCAAGTAGTACAGATCTTGACTTGACTCGCAGCTTTGAGTCTCTGCAGTTGGGACGAATGTCGGTGGATATGAACTTTCCGTCCGAGTTCTCTTCGATCTCGCAAGATAGTGACAGAATGTCTTTCTCATCACAGTCTATGGAAGACGTAGAGGCCGAGATGCGAAGGCTGAAGCTAGAACTCAAGCAAACCATGGAAATGTACAGTACAGCCTGCAAGGAAGCTCTTACAGCAAAACAAAAGGCAGTCGAGCTACAACGCTGGAAACTAGAAGAAGAACAAAGATTAGAAGAAGCGAGATTGGCGGGGGAAGCTGCATTGGCTTTAGCAGAACAGGAGAAGGCGAAGTCGAAAGTAGCCATTGAGGCAGCTGAAGCAGCTAGAAGAATTGCAGAATTGGAAGCACAAAAAAGAATGAAGGCTGAAATGAAAGCACTCAAAGAAACTGAAGAGAAGAAAAAGGCATTTGATGCATTGGCACAAAATGATATTAGGTATAGAAAGTATACGATCGAGGAAATCGAAGAGGCAACAGAGTTCTTTTCCGAATCTCGTAGGATCGGAGAAGGAGGATATGGTCCTGTTTACAAGTGTGATCTTGATCATACTCCGGTTGCCATTAAGGTTCTACGTCCAGATGCGACTCAAGGACGATCTCAGTTTAAACAAGAGGTAGAAGTACTCAGCTGTATACGTCATCCAAACATGGTTCTCCTCCTCGGAGCTTGCCCCGAGTATGGCTGCTTGGTCTATGAGTTCATGGCAAATGGGAGCTTAGAAGACCGGCTTCTGCGACGAGGAAACACGCCTCCACTTTCGTGGCAACTTAGGTTTAAAATTGCAGCTGAAATTGGAACATCATTGTTGTTCTTGCACCAAACAAAGCCAGAGCCTCTCGTGCATCGCGATCTCAAACCAGCTAACATTCTGCTCGATCGTAACTTTGTTAGTAAGATTAGTGATGTTGGCTTGGCTAGGCTTGTACCGCCATCGATTGCCGATAGCGTAACACAATATCGAATGACATCAACTGCTGGAACATTTTGCTACATTGATCCAGAGTATCAACAAACAGGTATGCTTGGTGTGAAATCCGACATATACTCGCTAGGCATCATGTTTCTCCAGCTGATAACTTCTAGGCCGCCAATGGGGTTGACTCACCATGTTGAAAGGGCTATCGAGAAGGGGATGTTTAAAAATATTCTCGATTCAGCCGTCCCCGATTGGCCTATTGAAGAAGCTTTGTCTTTCGCCAAGTTGTCGCTCAAGTGCGCTGAGTTAAGACGTAAAGATAGACCAGATCTTGGGAAGATCATCCTTCCAGAGCTTAACAGGTTAAGAATTATTGCAGAAGAAACAATGCACCCAACACTGATGGGAGATATAAGCCCTTCTCGCAGCGGCGGTCAAGTTTCTTTTCAGTTGGGAGCAATGGCTTCATCTCCGCAATCATACAACAGCTCGAGAAATCCATCGGCTAATTTTTGA 2082 44.43 MWLPRYSLERKERLNVNGFVAVAIDKDKGSQGALKWTIDHLLQRGQTVFLIHVKLRSPSNSSQNVAKAIIEYAANTAIENIVVGASAKSGFLRFKATDVPGSVVKGAPDFCNVFVISKSKIQSMRSASRPAPPVSALRGQLAQQISAKSDMPDFPVSHSASARVSLDKPPLDLPSKSQDEDDFMSQDMGGRATPPQISSSTDLDLTRSFESLQLGRMSVDMNFPSEFSSISQDSDRMSFSSQSMEDVEAEMRRLKLELKQTMEMYSTACKEALTAKQKAVELQRWKLEEEQRLEEARLAGEAALALAEQEKAKSKVAIEAAEAARRIAELEAQKRMKAEMKALKETEEKKKAFDALAQNDIRYRKYTIEEIEEATEFFSESRRIGEGGYGPVYKCDLDHTPVAIKVLRPDATQGRSQFKQEVEVLSCIRHPNMVLLLGACPEYGCLVYEFMANGSLEDRLLRRGNTPPLSWQLRFKIAAEIGTSLLFLHQTKPEPLVHRDLKPANILLDRNFVSKISDVGLARLVPPSIADSVTQYRMTSTAGTFCYIDPEYQQTGMLGVKSDIYSLGIMFLQLITSRPPMGLTHHVERAIEKGMFKNILDSAVPDWPIEEALSFAKLSLKCAELRRKDRPDLGKIILPELNRLRIIAEETMHPTLMGDISPSRSGGQVSFQLGAMASSPQSYNSSRNPSANF 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29113287 29118601 - Lsi04G022070.1 Lsi04g02207 662256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02207 693 PANTHER OS02G0152300 PROTEIN 200 690 - -
Lsi04g02207 693 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 34-LIKE 63 160 - -
Lsi04g02207 693 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 34-LIKE 200 690 - -
Lsi04g02207 693 Gene3D Phosphorylase Kinase; domain 1 356 450 - -
Lsi04g02207 693 Coils Coil 237 264 - -
Lsi04g02207 693 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 34-LIKE 12 60 - -
Lsi04g02207 693 SUPERFAMILY Protein kinase-like (PK-like) 360 637 IPR011009 -
Lsi04g02207 693 ProSiteProfiles Protein kinase domain profile. 378 656 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g02207 693 SMART serkin_6 378 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g02207 693 Gene3D Transferase(Phosphotransferase) domain 1 451 653 - -
Lsi04g02207 693 ProSitePatterns Serine/Threonine protein kinases active-site signature. 496 508 IPR008271 GO:0004672|GO:0006468
Lsi04g02207 693 CDD STK_N 20 118 - -
Lsi04g02207 693 Coils Coil 270 290 - -
Lsi04g02207 693 Pfam Protein kinase domain 379 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g02207 693 Coils Coil 304 350 - -
Lsi04g02207 693 Gene3D - 19 134 - -
Lsi04g02207 693 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 20 116 - -
Lsi04g02207 693 MobiDBLite consensus disorder prediction 147 201 - -
Lsi04g02207 693 PANTHER OS02G0152300 PROTEIN 63 160 - -
Lsi04g02207 693 PANTHER OS02G0152300 PROTEIN 12 60 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02207 Lsi-Chr4:29113287 Lsi08g00856 Lsi-Chr8:16978567 0 dispersed
Lsi03g02155 Lsi-Chr3:32696522 Lsi04g02207 Lsi-Chr4:29113287 1.78E-06 transposed
Lsi11g00824 Lsi-Chr11:10209977 Lsi04g02207 Lsi-Chr4:29113287 5.85E-09 transposed
Lsi11g01167 Lsi-Chr11:20180516 Lsi04g02207 Lsi-Chr4:29113287 0 transposed
Lsi04g02207 Lsi-Chr4:29113287 Lsi08g01117 Lsi-Chr8:19813869 1.80E-12 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83613 PF00069 Pkinase 1.20E-38 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02207 - - csv:105435028 1120.15