Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi04g02213 | ATGGATTCAAATTCAAAGAAGTCCAACAAAATCAGAGACATCGTACGGCTTCAACAGATCCTGAAGAAATGGCGGAAGCTAGCAAACTCATCGAAGACGGCCAACAAAATCTCCGGCACGGCGGCAGGACCTGCCGGAAAGAGCATAAAGTTTCTGAAACGGACATTATCATCGGCCGGCGGGGAAAGCTGCGGCGGCGCAGTACCAAAAGGCTATTTGGCGGTGAGCGTGGGGGAGGAGCAAAAGCGATTTGTGATACCGACGCAGTATTTAGGGCATCCGGCGTTCGAGATTCTGTTAAGAGAGGCGGAGGAGGAGTTCGGATTTCAACAAACGGGGGTTTTGAGGCTGCCGTGTGAAGTAACGGTGTTTGAAAATGTGTTGAAATTGGTCGAGGAAAAGAAGAAAGGGGATTTGTTGTTAGGGGGAGAAGAGGTTTTGAGTTTTTGTTCATTGGAAACGCTGCAGTTAACGCCGTCACACCGTCCGCAGAGTCCAATGTGCAGATAG | 510 | 49.8 | MDSNSKKSNKIRDIVRLQQILKKWRKLANSSKTANKISGTAAGPAGKSIKFLKRTLSSAGGESCGGAVPKGYLAVSVGEEQKRFVIPTQYLGHPAFEILLREAEEEFGFQQTGVLRLPCEVTVFENVLKLVEEKKKGDLLLGGEEVLSFCSLETLQLTPSHRPQSPMCR | 169 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 29173055 | 29173564 | - | Lsi04G022130.1 | Lsi04g02213 | 662262 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi04g02213 | 169 | Pfam | Auxin responsive protein | 23 | 130 | IPR003676 | GO:0009733 | |
| Lsi04g02213 | 169 | PANTHER | SAUR FAMILY PROTEIN | 7 | 169 | - | - | |
| Lsi04g02213 | 169 | PANTHER | AUXIN-INDUCED PROTEIN-LIKE-RELATED | 7 | 169 | IPR003676 | GO:0009733 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi01g01214 | Lsi-Chr1:10371832 | Lsi04g02213 | Lsi-Chr4:29173055 | 1.39E-17 | dispersed | |
| Lsi02g00521 | Lsi-Chr2:4458476 | Lsi04g02213 | Lsi-Chr4:29173055 | 2.77E-16 | dispersed | |
| Lsi03g01880 | Lsi-Chr3:30212201 | Lsi04g02213 | Lsi-Chr4:29173055 | 1.11E-15 | dispersed | |
| Lsi04g02213 | Lsi-Chr4:29173055 | Lsi10g01522 | Lsi-Chr10:19533974 | 1.68E-20 | dispersed | |
| Lsi09g01672 | Lsi-Chr9:25134752 | Lsi04g02213 | Lsi-Chr4:29173055 | 3.42E-17 | dispersed | |
| Lsi11g01247 | Lsi-Chr11:21105507 | Lsi04g02213 | Lsi-Chr4:29173055 | 1.11E-10 | dispersed | |
| Lsi04g02213 | Lsi-Chr4:29173055 | Lsi11g01154 | Lsi-Chr11:20083224 | 5.16E-26 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi04g02213 | K14488 | - | csv:101216710 | 282.722 |