Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02217 TCGAGTACCGAAATGTCGGGCTTTCCTTGGCTAGTTTCTCTTGATTTCAGGCTGCGTTTCTTATTGGAGGAGGCCTGCTTTGGTATTATGGTAGAAACAGAGCAAGTGGAGAACGTTGAATTTCAATGGGGCAAAAAGAAAGCAATTGGTGGGAAGAAGAAGGACGTGACCTTTTATGAATCTTTTACTTACGACGGTGTAGAATATTTTCTATATGACTCTGTCTACCTCTATAAGGAAGGTGAACCAGAGCCCTATATTGGTAAACTTCTTAAAATTTGGCAGAATCCTGATAAGACAAAGAAAGTAAAAATTCTTTGGTTTTTTCGATCTTGTGAGATTCTTAATTATCTTGGAGCTGAAGACATACGGGAGAATGAATTATTTTTGGCATCCGGCGATGGTGTTGGTCTTGCCAATGTTAATCCTCTGGAAGTAATTGCTGGAAAGTGCAATGTTCTCTGCATTTCAAATGACAGCAGAAATCCACAACCTTCAGATGAAGCACTCAAAAAGGCTGATTTTGTATTTTGTCGTACATTTGATGTTGGAAAACGAGAGGTCTGCAAGGAGATATGTGATAGAATTGCTGGAGTAGAAGTTAAACTCTTACTTAATAAAGTAGATAGGTCAAAACATGTTAAGAGGACCGATAAGGATTTGAAAGATGCAAGTGGCACTGCAATTGTAAATACTGAATTAGAAGATCCTTCTGGACGGGACACTTCTAATGGAGAATTAACTTTGAAGACTAATGACAGCTCTCTGGAGAAGTCCAGAGAGGAAAATGTTGTTTTGAAGGGGTCTATAGAGAAATCCTCCAGTGAAGACAAGTCTGGTGCACGTGTGATTGAGGGAGGAAATGGAATGGCTAAAACAACTAGTAGTAAACAAGAAAACATCTCAGATGATAAGGTCCCTCCGAAGCTTAAAATTGATTCTAATGAGAAGCCCGGTAAAGATGTTAAAGCGCCAGCTAAGGATGTTGAAGGTAGAGTTAAAAGTCCAAGGGAATCTGCTGAAGTTGAACATAGGCCAGCGAAGAAGGCAAAACTAGATAGTTCTGTTCAATTATCTCATGGAAAGACCAAGAGTGACATTCAAAAGCTTGGTCTCAATCGCAACAATGGTGACACTCTTGCTTCCTCGCCAAAGGTACTTGTTTCTGAAGATGCTTCCAGAGCCAAAAATGTAAAAGATTCTCATGAAACCAAAGATAGCCATATAAAGAAGCCCAAGCTAGATGAGAAGCCAACGAAGCCGTGGGAAGAAAGAATAAAAGATGCACATGAGCAAGGAACACTAGTTCTGATTCAGAATTTGGATCCTGCTTACACTTCAGGTGAAGTGGAGGATATTGTCTGGCATGCCTTCAACGAGAGTTGCACAGCTAAGATGATTCAGCGAACTGCAATTTCTATGCCTCACATAGGTCAAGCTTATGTTGTATTCAAAACCAAGGAAGCAGCAGAGAAAGTTGTTAGAAAATTAGATGAAGGTTGCTTATTACTTGCAAATGGGAGTGTTCTTGTTGGTAGCTTTGCAACTCCTCATCTTCCGTCAAAGAAACAAACTTTTTTTGGGCATCACAGTATTGATAAGCTTAGACATCAAATGCAACGTGAGATGAAAGAAGCTGTATCAACTTCGCATTGTTCTCAGCCAAATACAGTAGAATATGACATGGCCATGGAATGGTGTTTACTACAAGAAAGATCAGAATTCGTCTGCAAAAAGTTGTTCAAGGCTTCAACTTGGGGATTCAATCGGCAAATGGGAATCAAATGGCGCAATTCACGTAGTCAAAGCATCAGATTGGGTCAGAGCTGTGTTTCTTCGAATCAACAAGAAAGCAAACGACTCGGATGGCAGATTTTGTGGCGAAAATTCAAGAAGGAGAAGGAAAAAATCTTCAGCTGTTCTTCTGTTGAGTTGCGTTCTTCTTATAATCCAAATGCTTATCAGTTGAATTTTGATGAAGAAAATTGGAGCTCTGAGCCTGATAATCTCTGCAGGTCTTTCTCTGCTCGTTTTGCTGATCCATCAATTGTCTCAAGGAACTTGAGATTGTTGGATTGA 2079 39.92 SSTEMSGFPWLVSLDFRLRFLLEEACFGIMVETEQVENVEFQWGKKKAIGGKKKDVTFYESFTYDGVEYFLYDSVYLYKEGEPEPYIGKLLKIWQNPDKTKKVKILWFFRSCEILNYLGAEDIRENELFLASGDGVGLANVNPLEVIAGKCNVLCISNDSRNPQPSDEALKKADFVFCRTFDVGKREVCKEICDRIAGVEVKLLLNKVDRSKHVKRTDKDLKDASGTAIVNTELEDPSGRDTSNGELTLKTNDSSLEKSREENVVLKGSIEKSSSEDKSGARVIEGGNGMAKTTSSKQENISDDKVPPKLKIDSNEKPGKDVKAPAKDVEGRVKSPRESAEVEHRPAKKAKLDSSVQLSHGKTKSDIQKLGLNRNNGDTLASSPKVLVSEDASRAKNVKDSHETKDSHIKKPKLDEKPTKPWEERIKDAHEQGTLVLIQNLDPAYTSGEVEDIVWHAFNESCTAKMIQRTAISMPHIGQAYVVFKTKEAAEKVVRKLDEGCLLLANGSVLVGSFATPHLPSKKQTFFGHHSIDKLRHQMQREMKEAVSTSHCSQPNTVEYDMAMEWCLLQERSEFVCKKLFKASTWGFNRQMGIKWRNSRSQSIRLGQSCVSSNQQESKRLGWQILWRKFKKEKEKIFSCSSVELRSSYNPNAYQLNFDEENWSSEPDNLCRSFSARFADPSIVSRNLRLLD 692
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29225680 29236595 - Lsi04G022170.1 Lsi04g02217 662266

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02217 692 CDD RRM_SF 436 498 - -
Lsi04g02217 692 Gene3D - 412 519 IPR012677 -
Lsi04g02217 692 ProSiteProfiles BAH domain profile. 67 192 IPR001025 GO:0003682
Lsi04g02217 692 MobiDBLite consensus disorder prediction 253 279 - -
Lsi04g02217 692 SUPERFAMILY RNA-binding domain, RBD 424 514 IPR035979 GO:0003676
Lsi04g02217 692 Gene3D - 37 189 IPR043151 -
Lsi04g02217 692 PANTHER PROTEIN ANTI-SILENCING 1 30 583 - -
Lsi04g02217 692 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 434 517 IPR000504 GO:0003723
Lsi04g02217 692 MobiDBLite consensus disorder prediction 356 383 - -
Lsi04g02217 692 MobiDBLite consensus disorder prediction 392 417 - -
Lsi04g02217 692 MobiDBLite consensus disorder prediction 298 351 - -
Lsi04g02217 692 MobiDBLite consensus disorder prediction 231 417 - -
Lsi04g02217 692 SMART BAH_4 67 190 IPR001025 GO:0003682
Lsi04g02217 692 MobiDBLite consensus disorder prediction 236 252 - -
Lsi04g02217 692 PANTHER PROTEIN ANTI-SILENCING 1 30 583 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02217 - - - csv:101208860 942.569
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g361 Blo01g01711 . . . . Bpe02g00232 . Bma01g02490 . . Cma01g01593 . Car09g00478 . . . Cpe06g00414 . . . . . . . . . . . . . . Cone4ag1541 . . . Lsi04g02217 . . . . . . . . . . . Sed05g1617 Cmo01g01641 Cmo09g00537 . . Car01g01212 . . Cpe02g00384 Bhi09g02408 Tan01g3769 Cmetu04g2116 . Hepe01g2111 Mch11g0649 . . . . . . . . . . . Cme04g00306
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004249 3 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02217 Lsi_Chr04 FPKM 128.708832 132.176849 82.135239 79.371254 65.748878 63.370068 71.248299 37.980625 34.400482 39.606907